Rh5DG396200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000080
Physical Location & Seq
Reverse (-)
62226860 .. 62250235
23376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG396200.1

Sequence Viewer

Length: 744 bp
ATGGCATCAAAGAGTGGAAAAACAAAAATGAGGGGAGTTTTACGAGATGATGACGCAGAACGTCAGTATACTCGGGAACAGACAGAGAAAATACCTAATGATCAAGCTTTCACTGCTGTTTCTCATATGGACACTGATTGTGAAACTATATCAATAAAGCGAAGACAGGATTGTCAAAGAAGATCGAAAAGATTGAAAGGGGCTTCTCAGCGTGTGATCATAGAACAAAACCAGAGTTTGCAGAGCAATGATGAGAATGTCAATGCATTTGACTATGATCCAGGAGATCCTAGCATGATTGTAAATGAGACTCTATTTACTCATCCAAGCTCAAGTACTGACAATACAACTACAATGGATTTCAAGCATATCTGCTATTCCGATAATCACCGTCGGCCTCAATTCCAAAATAATATCAACTTTTGTAATATACTTAACGTTCACCACACTACCAAGCCCACAATCAATTGGGTCGGACCCATTAACGATTTGGTCTCCACCACCTACCACATAACCACAATCAATTGGGTCAGACTTCACCTCCACCACAGAACCACGCTCACAGTCAATTGGCTTGTCGTCGCCCTCTCGGTTATCGCCAAATTAGAATCCTCCCCAATCAAACCAGATGAGAGCTTCGTCCTTATCTCATCAATCCTCCCCACATACACATTCACCAAGTCGCCTCCCTTTGTAATCGTCTGTAAATCCGACGTCGTACTGGCGCCAGAGCTTGAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.2

Weight (kDa)

6.79

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 171
AatII GACGTC 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 724
AccI GTMKAC 1 cut(s) 68
AclI AACGTT 1 cut(s) 438
AclWI GGATC 2 cut(s) 272, 281
AcyI GRCGYC 2 cut(s) 714, 725
AfaI GTAC 2 cut(s) 337, 720
AgsI TTSAA 3 cut(s) 196, 364, 737
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 4 cut(s) 107, 330, 636, 733
AluI AGCT 4 cut(s) 107, 330, 636, 733
Alw26I GTCTC 2 cut(s) 302, 499
AlwI GGATC 2 cut(s) 272, 281
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 4 cut(s) 380, 434, 530, 667
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 2 cut(s) 100, 216
BcoDI GTCTC 2 cut(s) 302, 499
BfaI CTAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 728
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 478, 726
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 316
BsaHI GRCGYC 2 cut(s) 714, 725
BsaI GGTCTC 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bse1I ACTGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 726
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 724
BsiHKCI CYCGRG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 302, 499
BsnI GGCC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 499
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 5 cut(s) 100, 182, 216, 277, 286
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 478, 726
BspPI GGATC 2 cut(s) 272, 281
BspT107I GGYRCC 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 726
BssMI GATC 5 cut(s) 100, 182, 216, 277, 286
BssNAI GTATAC 1 cut(s) 69
BssNI GRCGYC 2 cut(s) 714, 725
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 392, 565
BstACI GRCGYC 2 cut(s) 714, 725
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 322
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 5 cut(s) 103, 185, 219, 280, 289
BstMAI GTCTC 2 cut(s) 302, 499
BstMBI GATC 5 cut(s) 100, 182, 216, 277, 286
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BstZ17I GTATAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 132
CfoI GCGC 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 476
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 336, 719
CviAII CATG 1 cut(s) 295
CviJI RGCY 8 cut(s) 107, 203, 330, 397, 457, 574, 636, 733
CviKI_1 RGCY 8 cut(s) 107, 203, 330, 397, 457, 574, 636, 733
CviQI GTAC 2 cut(s) 336, 719
DdeI CTNAG 1 cut(s) 207
DinI GGCGCC 1 cut(s) 726
DpnI GATC 5 cut(s) 102, 184, 218, 279, 288
DpnII GATC 5 cut(s) 100, 182, 216, 277, 286
DrdI GACNNNNNNGTC 1 cut(s) 171
DseDI GACNNNNNNGTC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 280
EcoT22I ATGCAT 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
FaeI CATG 1 cut(s) 298
FatI CATG 1 cut(s) 294
FauNDI CATATG 1 cut(s) 126
FbaI TGATCA 2 cut(s) 100, 216
FblI GTMKAC 1 cut(s) 68
FokI GGATG 1 cut(s) 309
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 726
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 1 cut(s) 397
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 2 cut(s) 714, 725
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 310, 608
HphI GGTGA 4 cut(s) 380, 434, 530, 667
Hpy166II GTNNAC 2 cut(s) 69, 442
Hpy188I TCNGA 5 cut(s) 382, 476, 533, 712, 743
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 2 cut(s) 69, 442
Hpy99I CGWCG 4 cut(s) 396, 584, 716, 719
HpyCH4III ACNGT 2 cut(s) 392, 565
HpyCH4IV ACGT 3 cut(s) 61, 438, 714
HpyCH4V TGCA 2 cut(s) 241, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 3 cut(s) 61, 438, 714
Hsp92I GRCGYC 2 cut(s) 714, 725
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 725
KasI GGCGCC 1 cut(s) 724
Ksp22I TGATCA 2 cut(s) 100, 216
Kzo9I GATC 5 cut(s) 100, 182, 216, 277, 286
LpnPI CCDG 6 cut(s) 152, 245, 267, 294, 639, 707
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 291
MaeII ACGT 3 cut(s) 61, 438, 714
MalI GATC 5 cut(s) 102, 184, 218, 279, 288
MboI GATC 5 cut(s) 100, 182, 216, 277, 286
MboII GAAGA 2 cut(s) 174, 192
MfeI CAATTG 3 cut(s) 466, 523, 568
MflI RGATCY 1 cut(s) 286
MluCI AATT 5 cut(s) 401, 466, 523, 568, 602
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 454, 735
MnlI CCTC 7 cut(s) 24, 408, 551, 596, 622, 668, 696
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 2 cut(s) 435, 483
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 3 cut(s) 466, 523, 568
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 725
NdeI CATATG 1 cut(s) 126
NdeII GATC 5 cut(s) 100, 182, 216, 277, 286
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 478, 726
NsiI ATGCAT 1 cut(s) 268
PfeI GAWTC 1 cut(s) 608
PfoI TCCNGGA 1 cut(s) 280
PleI GAGTC 1 cut(s) 304
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 478, 726
PspPI GGNCC 1 cut(s) 476
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 337, 720
RsaNI GTAC 2 cut(s) 336, 719
SaqAI TTAA 2 cut(s) 435, 483
Sau3AI GATC 5 cut(s) 100, 182, 216, 277, 286
Sau96I GGNCC 1 cut(s) 476
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 282
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 726
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 5 cut(s) 401, 466, 523, 568, 602
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 392, 565
TaiI ACGT 3 cut(s) 64, 441, 717
TaqI TCGA 1 cut(s) 185
TasI AATT 5 cut(s) 401, 466, 523, 568, 602
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 2 cut(s) 435, 483
Tru9I TTAA 2 cut(s) 435, 483
TscAI CASTG 2 cut(s) 118, 139
TspRI CASTG 2 cut(s) 118, 139
VpaK11BI GGWCC 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 291
ZraI GACGTC 1 cut(s) 715
ZrmI AGTACT 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.