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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 495, 498 |
| AclWI | GGATC | 4 cut(s) | 387, 400, 448, 461 |
| AcoI | YGGCCR | 1 cut(s) | 274 |
| AcsI | RAATTY | 2 cut(s) | 243, 295 |
| AfaI | GTAC | 1 cut(s) | 511 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 272, 345 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgeI | ACCGGT | 1 cut(s) | 506 |
| AgsI | TTSAA | 2 cut(s) | 37, 432 |
| AjiI | CACGTC | 1 cut(s) | 195 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 438, 470 |
| AluBI | AGCT | 3 cut(s) | 96, 230, 428 |
| AluI | AGCT | 3 cut(s) | 96, 230, 428 |
| Alw26I | GTCTC | 1 cut(s) | 492 |
| AlwI | GGATC | 4 cut(s) | 387, 400, 448, 461 |
| AoxI | GGCC | 2 cut(s) | 274, 492 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| ApoI | RAATTY | 2 cut(s) | 243, 295 |
| AsiGI | ACCGGT | 1 cut(s) | 506 |
| AspLEI | GCGC | 2 cut(s) | 333, 523 |
| AsuHPI | GGTGA | 3 cut(s) | 93, 121, 293 |
| BalI | TGGCCA | 1 cut(s) | 276 |
| BamHI | GGATCC | 2 cut(s) | 392, 453 |
| BbsI | GAAGAC | 3 cut(s) | 71, 149, 189 |
| BbvCI | CCTCAGC | 1 cut(s) | 223 |
| BbvI | GCAGC | 1 cut(s) | 239 |
| BccI | CCATC | 1 cut(s) | 170 |
| BceAI | ACGGC | 1 cut(s) | 344 |
| BcoDI | GTCTC | 1 cut(s) | 492 |
| BfmI | CTRYAG | 1 cut(s) | 171 |
| BfoI | RGCGCY | 2 cut(s) | 334, 524 |
| BisI | GCNGC | 3 cut(s) | 228, 495, 498 |
| BlsI | GCNGC | 3 cut(s) | 229, 496, 499 |
| BmgBI | CACGTC | 1 cut(s) | 195 |
| BmiI | GGNNCC | 3 cut(s) | 187, 394, 455 |
| BmsI | GCATC | 2 cut(s) | 224, 409 |
| BpiI | GAAGAC | 3 cut(s) | 71, 149, 189 |
| Bpu10I | CCTNAGC | 1 cut(s) | 223 |
| BsaI | GGTCTC | 1 cut(s) | 492 |
| BsaWI | WCCGGW | 1 cut(s) | 506 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 272, 345 |
| Bse118I | RCCGGY | 1 cut(s) | 506 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 272, 345 |
| BseMII | CTCAG | 2 cut(s) | 237, 503 |
| BseXI | GCAGC | 1 cut(s) | 239 |
| BshFI | GGCC | 2 cut(s) | 276, 494 |
| BshTI | ACCGGT | 1 cut(s) | 506 |
| BsiSI | CCGG | 1 cut(s) | 507 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 272, 345 |
| BsmAI | GTCTC | 1 cut(s) | 492 |
| BsnI | GGCC | 2 cut(s) | 276, 494 |
| Bso31I | GGTCTC | 1 cut(s) | 492 |
| Bsp143I | GATC | 2 cut(s) | 392, 453 |
| BspACI | CCGC | 2 cut(s) | 495, 498 |
| BspANI | GGCC | 2 cut(s) | 276, 494 |
| BspCNI | CTCAG | 2 cut(s) | 236, 502 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 3 cut(s) | 187, 394, 455 |
| BspPI | GGATC | 4 cut(s) | 387, 400, 448, 461 |
| BspTNI | GGTCTC | 1 cut(s) | 492 |
| BsrFI | RCCGGY | 1 cut(s) | 506 |
| BssAI | RCCGGY | 1 cut(s) | 506 |
| BssMI | GATC | 2 cut(s) | 392, 453 |
| Bst4CI | ACNGT | 1 cut(s) | 179 |
| Bst6I | CTCTTC | 1 cut(s) | 172 |
| BstDEI | CTNAG | 3 cut(s) | 223, 479, 489 |
| BstH2I | RGCGCY | 2 cut(s) | 334, 524 |
| BstHHI | GCGC | 2 cut(s) | 333, 523 |
| BstKTI | GATC | 2 cut(s) | 395, 456 |
| BstMAI | GTCTC | 1 cut(s) | 492 |
| BstMBI | GATC | 2 cut(s) | 392, 453 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 54, 227 |
| BstSFI | CTRYAG | 1 cut(s) | 171 |
| BstV1I | GCAGC | 1 cut(s) | 239 |
| BstV2I | GAAGAC | 3 cut(s) | 71, 149, 189 |
| BstX2I | RGATCY | 2 cut(s) | 392, 453 |
| BstYI | RGATCY | 2 cut(s) | 392, 453 |
| BsuRI | GGCC | 2 cut(s) | 276, 494 |
| BtrI | CACGTC | 1 cut(s) | 195 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 2 cut(s) | 333, 523 |
| Cfr10I | RCCGGY | 1 cut(s) | 506 |
| Csp6I | GTAC | 1 cut(s) | 510 |
| CspAI | ACCGGT | 1 cut(s) | 506 |
| CviAII | CATG | 2 cut(s) | 233, 363 |
| CviJI | RGCY | 5 cut(s) | 96, 230, 276, 428, 494 |
| CviKI_1 | RGCY | 5 cut(s) | 96, 230, 276, 428, 494 |
| CviQI | GTAC | 1 cut(s) | 510 |
| DdeI | CTNAG | 3 cut(s) | 223, 479, 489 |
| DpnI | GATC | 2 cut(s) | 394, 455 |
| DpnII | GATC | 2 cut(s) | 392, 453 |
| EaeI | YGGCCR | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 172 |
| EarI | CTCTTC | 1 cut(s) | 172 |
| Eco31I | GGTCTC | 1 cut(s) | 492 |
| EcoT22I | ATGCAT | 1 cut(s) | 368 |
| FaeI | CATG | 2 cut(s) | 236, 366 |
| FatI | CATG | 2 cut(s) | 232, 362 |
| Fnu4HI | GCNGC | 3 cut(s) | 228, 495, 498 |
| Fsp4HI | GCNGC | 3 cut(s) | 228, 495, 498 |
| GlaI | GCGC | 2 cut(s) | 332, 522 |
| GluI | GCNGC | 3 cut(s) | 228, 495, 498 |
| HaeII | RGCGCY | 2 cut(s) | 334, 524 |
| HaeIII | GGCC | 2 cut(s) | 276, 494 |
| HapII | CCGG | 1 cut(s) | 507 |
| HhaI | GCGC | 2 cut(s) | 333, 523 |
| Hin1II | CATG | 2 cut(s) | 236, 366 |
| Hin6I | GCGC | 2 cut(s) | 331, 521 |
| HinP1I | GCGC | 2 cut(s) | 331, 521 |
| HincII | GTYRAC | 1 cut(s) | 290 |
| HindII | GTYRAC | 1 cut(s) | 290 |
| HindIII | AAGCTT | 1 cut(s) | 94 |
| HpaII | CCGG | 1 cut(s) | 507 |
| HphI | GGTGA | 3 cut(s) | 93, 121, 293 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 290, 412 |
| Hpy188I | TCNGA | 1 cut(s) | 64 |
| Hpy188III | TCNNGA | 2 cut(s) | 116, 233 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 290, 412 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 1 cut(s) | 230 |
| HpyCH4III | ACNGT | 1 cut(s) | 179 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 194 |
| HpyCH4V | TGCA | 3 cut(s) | 90, 326, 366 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 54, 227 |
| HpyF3I | CTNAG | 3 cut(s) | 223, 479, 489 |
| HpySE526I | ACGT | 2 cut(s) | 27, 194 |
| Hsp92II | CATG | 2 cut(s) | 236, 366 |
| HspAI | GCGC | 2 cut(s) | 331, 521 |
| Kzo9I | GATC | 2 cut(s) | 392, 453 |
| LpnPI | CCDG | 3 cut(s) | 434, 476, 520 |
| Lsp1109I | GCAGC | 1 cut(s) | 239 |
| LweI | GCATC | 2 cut(s) | 224, 409 |
| MaeII | ACGT | 2 cut(s) | 27, 194 |
| MalI | GATC | 2 cut(s) | 394, 455 |
| MboI | GATC | 2 cut(s) | 392, 453 |
| MboII | GAAGA | 4 cut(s) | 71, 154, 159, 189 |
| MfeI | CAATTG | 1 cut(s) | 109 |
| MflI | RGATCY | 2 cut(s) | 392, 453 |
| MlsI | TGGCCA | 1 cut(s) | 276 |
| MluCI | AATT | 5 cut(s) | 109, 243, 295, 369, 459 |
| MluNI | TGGCCA | 1 cut(s) | 276 |
| MnlI | CCTC | 6 cut(s) | 50, 114, 157, 176, 232, 258 |
| Mox20I | TGGCCA | 1 cut(s) | 276 |
| Mph1103I | ATGCAT | 1 cut(s) | 368 |
| MscI | TGGCCA | 1 cut(s) | 276 |
| MseI | TTAA | 2 cut(s) | 335, 529 |
| MslI | CAYNNNNRTG | 2 cut(s) | 361, 417 |
| Msp20I | TGGCCA | 1 cut(s) | 276 |
| MspI | CCGG | 1 cut(s) | 507 |
| MunI | CAATTG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 54, 227 |
| NdeII | GATC | 2 cut(s) | 392, 453 |
| NlaIII | CATG | 2 cut(s) | 236, 366 |
| NlaIV | GGNNCC | 3 cut(s) | 187, 394, 455 |
| NsiI | ATGCAT | 1 cut(s) | 368 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PinAI | ACCGGT | 1 cut(s) | 506 |
| PkrI | GCNGC | 3 cut(s) | 229, 496, 499 |
| PspN4I | GGNNCC | 3 cut(s) | 187, 394, 455 |
| PsuI | RGATCY | 2 cut(s) | 392, 453 |
| RsaI | GTAC | 1 cut(s) | 511 |
| RsaNI | GTAC | 1 cut(s) | 510 |
| RseI | CAYNNNNRTG | 2 cut(s) | 361, 417 |
| SaqAI | TTAA | 2 cut(s) | 335, 529 |
| SatI | GCNGC | 3 cut(s) | 228, 495, 498 |
| Sau3AI | GATC | 2 cut(s) | 392, 453 |
| SfaNI | GCATC | 2 cut(s) | 224, 409 |
| SfcI | CTRYAG | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 361, 417 |
| Sse9I | AATT | 5 cut(s) | 109, 243, 295, 369, 459 |
| SsiI | CCGC | 2 cut(s) | 495, 498 |
| SspI | AATATT | 1 cut(s) | 271 |
| TaaI | ACNGT | 1 cut(s) | 179 |
| TaiI | ACGT | 2 cut(s) | 30, 197 |
| TasI | AATT | 5 cut(s) | 109, 243, 295, 369, 459 |
| TauI | GCSGC | 2 cut(s) | 497, 500 |
| Tru1I | TTAA | 2 cut(s) | 335, 529 |
| Tru9I | TTAA | 2 cut(s) | 335, 529 |
| TseI | GCWGC | 1 cut(s) | 227 |
| TspDTI | ATGAA | 4 cut(s) | 17, 189, 249, 351 |
| XapI | RAATTY | 2 cut(s) | 243, 295 |
| Zsp2I | ATGCAT | 1 cut(s) | 368 |