Rmu_sc0026849.1_g000002

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026849.1
Physical Location & Seq
Forward (+)
6362 .. 7204
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026849.1_g000002.1.cds

Sequence Viewer

Length: 843 bp
atgccatcaactttgaggagattattcatcacaattttcgtgtacaatgagccaatcgatgttcgaacattaagggatgaaatttttccttttatggtggaagattatccttcatctgatgatgttgcaaaccgaaacaagctcttacaagatttaaatggagtacttgaacaatttaacaaaaacaatagacattttgacctacctgaaatgacaagggagccagaagaaaattcaagaatgccaaggtgtattgaaaacgaactttccgtacatatctcgcaagaagacattgatgtaattgaccgccctaatgacgaccaaaggatcgcctttaacatgatcatggatgcagttcagagaaaaagaagtgcattattttttgttgatggtcctagtggaactgggatgacatattcataccgtgcattgctagtaaacttacgaagaatgaatcatatagtcttagccacaatatcatctagaatagccgcaaatatactgcccgatgggaggacagctcactttagatttaagattctacttaatatagatgcgtcatctatgtgctccataagtaaaaaatttgctctggcacaactgatacaagattcgactgcaattatttgggatgaggcacttatgacacatcgacatgtctttgaagcacttgatcgaacttttcgagacataatggatgtcgacttaccattcggtggaaagataatgatttttgggggagattttcgtcaagtcctccctgttgttgctaaaggaacaaagtatgaactcattcaggcctccattctgaaatcaacattttgggcacagataagatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

280

Amino Acids

32.35

Weight (kDa)

6.1

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 716
AccI GTMKAC 1 cut(s) 702
AciI CCGC 2 cut(s) 307, 492
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 3 cut(s) 81, 232, 584
AfaI GTAC 3 cut(s) 44, 165, 273
AfiI CCNNNNNNNGG 2 cut(s) 513, 716
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 4 cut(s) 170, 237, 257, 665
AluBI AGCT 2 cut(s) 142, 521
AluI AGCT 2 cut(s) 142, 521
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 1 cut(s) 681
AlwI GGATC 1 cut(s) 335
AoxI GGCC 1 cut(s) 798
ApoI RAATTY 3 cut(s) 81, 232, 584
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
Asp700I GAANNNNTTC 2 cut(s) 84, 792
AspS9I GGNCC 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 572
BccI CCATC 3 cut(s) 13, 383, 503
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 681
BfaI CTAG 3 cut(s) 396, 434, 483
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
BmcAI AGTACT 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 340, 544
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 505, 537
Bpu14I TTCGAA 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 716
Bse1I ACTGG 1 cut(s) 409
Bse3DI GCAATG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 5 cut(s) 82, 355, 414, 637, 703
BseLI CCNNNNNNNGG 2 cut(s) 513, 716
BseMI GCAATG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 409
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 829
BshFI GGCC 1 cut(s) 800
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 513, 716
BsmAI GTCTC 1 cut(s) 681
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 800
Bsp119I TTCGAA 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 572, 829
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 327, 342, 673
BspACI CCGC 2 cut(s) 307, 492
BspANI GGCC 1 cut(s) 800
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 428
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 409
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 3 cut(s) 327, 342, 673
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 466
BstF5I GGATG 5 cut(s) 82, 355, 414, 637, 703
BstKTI GATC 3 cut(s) 330, 345, 676
BstMAI GTCTC 1 cut(s) 681
BstMBI GATC 3 cut(s) 327, 342, 673
BstNSI RCATGY 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 829
BstV2I GAAGAC 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 800
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 5 cut(s) 82, 355, 414, 637, 703
Cfr13I GGNCC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 546
Csp6I GTAC 3 cut(s) 43, 164, 272
CviAII CATG 3 cut(s) 340, 346, 656
CviJI RGCY 7 cut(s) 52, 142, 223, 470, 491, 521, 800
CviKI_1 RGCY 7 cut(s) 52, 142, 223, 470, 491, 521, 800
CviQI GTAC 3 cut(s) 43, 164, 272
DdeI CTNAG 1 cut(s) 466
DpnI GATC 3 cut(s) 329, 344, 675
DpnII GATC 3 cut(s) 327, 342, 673
DraI TTTAAA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 3 cut(s) 343, 349, 659
FatI CATG 3 cut(s) 339, 345, 655
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 5 cut(s) 89, 362, 421, 644, 710
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 3 cut(s) 396, 434, 483
GluI GCNGC 1 cut(s) 492
HaeIII GGCC 1 cut(s) 800
HgaI GACGC 1 cut(s) 546
Hin1II CATG 3 cut(s) 343, 349, 659
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 3 cut(s) 454, 538, 611
Hpy166II GTNNAC 3 cut(s) 43, 439, 703
Hpy188I TCNGA 3 cut(s) 118, 360, 810
Hpy188III TCNNGA 3 cut(s) 237, 483, 686
Hpy8I GTNNAC 3 cut(s) 43, 439, 703
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 128, 353, 374, 428, 620
HpyF3I CTNAG 1 cut(s) 466
Hsp92II CATG 3 cut(s) 343, 349, 659
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 3 cut(s) 327, 342, 673
LmnI GCTCC 2 cut(s) 220, 575
LpnPI CCDG 6 cut(s) 219, 237, 390, 578, 774, 782
LweI GCATC 2 cut(s) 340, 544
MaeI CTAG 3 cut(s) 396, 434, 483
MalI GATC 3 cut(s) 329, 344, 675
MboI GATC 3 cut(s) 327, 342, 673
MboII GAAGA 4 cut(s) 113, 239, 299, 459
MhlI GDGCHC 2 cut(s) 572, 829
MluCI AATT 7 cut(s) 33, 81, 173, 232, 300, 584, 621
MnlI CCTC 5 cut(s) 9, 507, 628, 767, 811
MroXI GAANNNNTTC 2 cut(s) 84, 792
MseI TTAA 6 cut(s) 71, 155, 177, 336, 534, 546
MslI CAYNNNNRTG 3 cut(s) 344, 565, 654
Mva1269I GAATGC 1 cut(s) 246
NdeII GATC 3 cut(s) 327, 342, 673
NlaIII CATG 3 cut(s) 343, 349, 659
NlaIV GGNNCC 1 cut(s) 222
NspI RCATGY 1 cut(s) 659
NspV TTCGAA 1 cut(s) 64
PceI AGGCCT 1 cut(s) 800
PciI ACATGT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 682
PctI GAATGC 1 cut(s) 246
PdmI GAANNNNTTC 2 cut(s) 84, 792
PfeI GAWTC 3 cut(s) 454, 538, 611
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 1 cut(s) 493
PscI ACATGT 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 392
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
RsaI GTAC 3 cut(s) 44, 165, 273
RsaNI GTAC 3 cut(s) 43, 164, 272
RseI CAYNNNNRTG 3 cut(s) 344, 565, 654
SalI GTCGAC 1 cut(s) 701
SaqAI TTAA 6 cut(s) 71, 155, 177, 336, 534, 546
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 3 cut(s) 327, 342, 673
Sau96I GGNCC 1 cut(s) 392
ScaI AGTACT 1 cut(s) 165
SduI GDGCHC 2 cut(s) 572, 829
SetI ASST 5 cut(s) 144, 204, 208, 251, 523
SfaNI GCATC 2 cut(s) 340, 544
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 1 cut(s) 392
SmiI ATTTAAAT 1 cut(s) 156
SmiMI CAYNNNNRTG 3 cut(s) 344, 565, 654
Sse9I AATT 7 cut(s) 33, 81, 173, 232, 300, 584, 621
SseBI AGGCCT 1 cut(s) 800
SsiI CCGC 2 cut(s) 307, 492
SspMI CTAG 3 cut(s) 396, 434, 483
StuI AGGCCT 1 cut(s) 800
StyI CCWWGG 1 cut(s) 245
SwaI ATTTAAAT 1 cut(s) 156
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 7 cut(s) 57, 64, 614, 652, 676, 685, 702
TasI AATT 7 cut(s) 33, 81, 173, 232, 300, 584, 621
TatI WGTACW 2 cut(s) 42, 163
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 3 cut(s) 454, 538, 611
Tru1I TTAA 6 cut(s) 71, 155, 177, 336, 534, 546
Tru9I TTAA 6 cut(s) 71, 155, 177, 336, 534, 546
TspDTI ATGAA 6 cut(s) 16, 93, 102, 408, 467, 801
TspGWI ACGGA 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 3 cut(s) 81, 232, 584
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 2 cut(s) 84, 792
XspI CTAG 3 cut(s) 396, 434, 483
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.