Rmu_sc0009472.1_g000019

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009472.1
OG0000080
Physical Location & Seq
Forward (+)
56864 .. 59372
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009472.1_g000019.1.cds

Sequence Viewer

Length: 2046 bp
atgggtgtgcatgtcgatgaaagtcttgcaaccgggggtggtactttcacatttcgtgctcagggatccatatatcataagataggaagtcttctaccaaatggtaatagaccaagatatctacaattgtacatatatgatactgaccatgaagtggacaatcgtatgctggagaatgcatcactacatagagatgtggttgaaaaaatacaaagaatcttgaatcaacataacccatttgtacaaacatttcatcacctagcacagcgtccggatctgcaaaattgcagactcatcattagagagcaagctgcgaaccaacatcagtatagtttgccttcagcatcccaggttgctgcaataatagtgggtacaaatgatgtggaaaatatgacgggtcgtgatattgttgtacaaacaaagcaaggccagcttctaaatattcaagattgtgttgggtactatgatcccttacagtatccattattgttaccatatggaacatatggatgggatgtgaatagtcggaataataatggtcaaaaattgacgtgtcgtgactattatgcttatattttgcagatccgccaatatgatgattcacttttactccgcgggggtcgcctattggaacaatatgtcgtggataattatgtcaaaattgaaacacaaaagttgagatggattcgtagcaatcaaagtactcttcgacgtgagttgtatgacggactacatgactcacttaatgctggtgaaaataatgcagaccattttgccatatcttttattggaagtccacgtgatatgcaccaaagatatcaggatgcaatggctttggtccaaaaatatggaaagccggattttctcctcacaatgacatgtaatccaaattgggaagaaataactacagagttattacctggtcaagcggcacaagatcgcccggatctaactacgcgaatttttcacgccaaatttgaagagttaaagaatgatgttattaaaaaaggagtcttgggtactgttgtagcatacgtatatgtcatcgagtttcaaaaacgtggtctcccacacgttcatatgcttctcatgttaagtgatgatgataaactaaacaacccagatgattataaccacattgttcgggctgaaattccagatcaaaatgaagagcgagagttatacaatgcggtgttggggaacatgatacacggtccatgtggggtacataggcaaactgctccatgtatgaagcgtgggagctgcaaacgaggctatccaaagccattttcagcaaacacatttcaaggaaatgattcttatcctgtttatcgtagacgagacaatcactcagatatgcaatctaatggcaatcaaaatagaccactggataacagttgggttatcccctataacccatgtgaaaaagtcattggaagaatttacacaatgtcaccttcagaaggagaaaagttttacttgcgtgttcttcttaatcatgttcgaggacctaagtcatttgaggatttaaggacatttgatggtgtcttacaaccgacattcaaaaaagcagttgaacaacgtggtttgttagaagatgacgaaagtattagacaatgtctacttgaggcctctaatattcgtatgccgtcatctttaagaagattgtttgtcaccatcctagtttattgcatgccccatggtgtatgcagtttgtgggatgaattttatccattcatgatagaggattatccttcttcgagcaccacagacaatgtacgtatcacaaatagacttttacgggacttgaacgagttgttggtgcagcacagtaagtccgtctttgattatgacttgccagaaatgactcaagatggtggtgaaaattcttcaatgccgaggctaatacaagatgaaatttcaattaacattcctcaagaagactgtgatgcagttcatcatttgaatgaggatcaaacttttgcatacaattccataatatctgctattgagtgtcatgacaatgccatatatttcgttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

681

Amino Acids

78.44

Weight (kDa)

5.69

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1131
AccB7I CCANNNNNTGG 1 cut(s) 154
AccI GTMKAC 2 cut(s) 1336, 1621
AccII CGCG 2 cut(s) 615, 958
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 5 cut(s) 586, 613, 615, 929, 1190
AclWI GGATC 7 cut(s) 60, 73, 282, 461, 577, 954, 1980
AcsI RAATTY 7 cut(s) 960, 974, 1152, 1440, 1724, 1885, 1917
AcuI CTGAAG 2 cut(s) 324, 1443
AcvI CACGTG 1 cut(s) 800
AfiI CCNNNNNNNGG 2 cut(s) 154, 1463
AflIII ACRYGT 3 cut(s) 551, 878, 1072
AjiI CACGTC 2 cut(s) 552, 713
AjnI CCWGG 2 cut(s) 348, 919
AjuI GAANNNNNNNTTGG 6 cut(s) 1273, 1305, 1416, 1448, 1802, 1834
AluBI AGCT 3 cut(s) 311, 433, 1263
AluI AGCT 3 cut(s) 311, 433, 1263
Alw21I GWGCWC 2 cut(s) 61, 1766
Alw26I GTCTC 2 cut(s) 1070, 1335
AlwI GGATC 7 cut(s) 60, 73, 282, 461, 577, 954, 1980
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 2 cut(s) 427, 1629
ApeKI GCWGC 4 cut(s) 311, 356, 1263, 1825
ApoI RAATTY 7 cut(s) 960, 974, 1152, 1440, 1724, 1885, 1917
ArsI GACNNNNNNTTYG 2 cut(s) 1048, 1080
Asp700I GAANNNNTTC 1 cut(s) 1315
AspS9I GGNCC 3 cut(s) 838, 1214, 1508
AsuC2I CCSGG 2 cut(s) 34, 944
AsuHPI GGTGA 5 cut(s) 248, 764, 1446, 1666, 1892
AvaII GGWCC 3 cut(s) 838, 1214, 1508
BaeI ACNNNNGTAYC 2 cut(s) 1011, 1044
BamHI GGATCC 1 cut(s) 65
BbrPI CACGTG 1 cut(s) 800
BbsI GAAGAC 2 cut(s) 83, 1947
Bbv12I GWGCWC 2 cut(s) 61, 1766
BbvI GCAGC 4 cut(s) 298, 343, 1250, 1837
BccI CCATC 5 cut(s) 504, 675, 1535, 1685, 1868
BceAI ACGGC 1 cut(s) 1633
BciT130I CCWGG 2 cut(s) 350, 921
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 2 cut(s) 34, 944
BcoDI GTCTC 2 cut(s) 1070, 1335
BfaI CTAG 2 cut(s) 260, 1682
BfmI CTRYAG 1 cut(s) 906
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 5 cut(s) 312, 357, 930, 1264, 1826
BlsI GCNGC 5 cut(s) 313, 358, 931, 1265, 1827
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 4 cut(s) 34, 350, 921, 944
Bme18I GGWCC 3 cut(s) 838, 1214, 1508
BmgBI CACGTC 2 cut(s) 552, 713
BmgT120I GGNCC 3 cut(s) 838, 1214, 1508
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 4 cut(s) 34, 350, 921, 944
BmsI GCATC 4 cut(s) 188, 353, 814, 1939
BoxI GACNNNNGTC 1 cut(s) 1513
BpiI GAAGAC 2 cut(s) 83, 1947
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 3 cut(s) 1646, 1854, 1920
BpuMI CCSGG 2 cut(s) 34, 944
BsaAI YACGTR 3 cut(s) 800, 1036, 1781
BsaBI GATNNNNATC 1 cut(s) 1320
BsaI GGTCTC 1 cut(s) 1070
BsaJI CCNNGG 5 cut(s) 33, 348, 613, 1699, 1898
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 594, 624, 1050, 1080
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 1463
Bse1I ACTGG 1 cut(s) 1392
Bse3DI GCAATG 1 cut(s) 834
Bse8I GATNNNNATC 1 cut(s) 1320
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 2 cut(s) 350, 921
BseDI CCNNGG 5 cut(s) 33, 348, 613, 1699, 1898
BseGI GGATG 6 cut(s) 344, 515, 520, 829, 1677, 1726
BseJI GATNNNNATC 1 cut(s) 1320
BseLI CCNNNNNNNGG 2 cut(s) 154, 1463
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 2 cut(s) 74, 1365
BseNI ACTGG 1 cut(s) 1392
BseRI GAGGAG 1 cut(s) 857
BseXI GCAGC 4 cut(s) 298, 343, 1250, 1837
BsgI GTGCAG 1 cut(s) 1844
Bsh1236I CGCG 2 cut(s) 615, 958
BshFI GGCC 2 cut(s) 429, 1631
BsiHKAI GWGCWC 2 cut(s) 61, 1766
BsiSI CCGG 4 cut(s) 33, 272, 857, 944
BslFI GGGAC 1 cut(s) 1817
BslI CCNNNNNNNGG 2 cut(s) 154, 1463
BsmAI GTCTC 2 cut(s) 1070, 1335
BsmFI GGGAC 1 cut(s) 1817
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 2 cut(s) 429, 1631
Bso31I GGTCTC 1 cut(s) 1070
Bsp1286I GDGCHC 2 cut(s) 61, 1766
Bsp13I TCCGGA 1 cut(s) 271
Bsp1407I TGTACA 3 cut(s) 129, 241, 412
Bsp143I GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
Bsp19I CCATGG 1 cut(s) 1699
BspACI CCGC 5 cut(s) 586, 613, 615, 929, 1190
BspANI GGCC 2 cut(s) 429, 1631
BspCNI CTCAG 2 cut(s) 73, 1364
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 2 cut(s) 615, 958
BspHI TCATGA 2 cut(s) 1737, 2017
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 7 cut(s) 60, 73, 282, 461, 577, 954, 1980
BspQI GCTCTTC 1 cut(s) 1164
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 834
BsrGI TGTACA 3 cut(s) 129, 241, 412
BsrI ACTGG 1 cut(s) 1392
BssECI CCNNGG 5 cut(s) 33, 348, 613, 1699, 1898
BssMI GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
BssT1I CCWWGG 1 cut(s) 1699
Bst2UI CCWGG 2 cut(s) 350, 921
Bst4CI ACNGT 6 cut(s) 477, 1024, 1214, 1397, 1832, 1946
Bst6I CTCTTC 3 cut(s) 711, 975, 1164
BstAUI TGTACA 3 cut(s) 129, 241, 412
BstBAI YACGTR 3 cut(s) 800, 1036, 1781
BstC8I GCNNGC 3 cut(s) 309, 431, 1694
BstDEI CTNAG 3 cut(s) 60, 1351, 1512
BstDSI CCRYGG 2 cut(s) 613, 1699
BstENI CCTNNNNNAGG 1 cut(s) 1461
BstF5I GGATG 6 cut(s) 344, 515, 520, 829, 1677, 1726
BstFNI CGCG 2 cut(s) 615, 958
BstKTI GATC 8 cut(s) 68, 277, 469, 585, 940, 949, 1162, 1975
BstMAI GTCTC 2 cut(s) 1070, 1335
BstMBI GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
BstMWI GCNNNNNNNGC 3 cut(s) 430, 621, 1272
BstNI CCWGG 2 cut(s) 350, 921
BstNSI RCATGY 3 cut(s) 14, 882, 1696
BstPAI GACNNNNGTC 1 cut(s) 1513
BstSCI CCNGG 4 cut(s) 32, 348, 919, 942
BstSFI CTRYAG 1 cut(s) 906
BstSNI TACGTA 2 cut(s) 1036, 1781
BstUI CGCG 2 cut(s) 615, 958
BstV1I GCAGC 4 cut(s) 298, 343, 1250, 1837
BstV2I GAAGAC 2 cut(s) 83, 1947
BstX2I RGATCY 4 cut(s) 65, 274, 582, 946
BstXI CCANNNNNNTGG 1 cut(s) 848
BstYI RGATCY 4 cut(s) 65, 274, 582, 946
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 429, 1631
BtgI CCRYGG 2 cut(s) 613, 1699
BtrI CACGTC 2 cut(s) 552, 713
BtsCI GGATG 6 cut(s) 344, 515, 520, 829, 1677, 1726
BtsIMutI CAGTG 1 cut(s) 1385
Cac8I GCNNGC 3 cut(s) 309, 431, 1694
CciI TCATGA 2 cut(s) 1737, 2017
Cfr13I GGNCC 3 cut(s) 838, 1214, 1508
Cfr42I CCGCGG 1 cut(s) 616
CseI GACGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 919
CspCI CAANNNNNGTGG 4 cut(s) 348, 363, 383, 398
DdeI CTNAG 3 cut(s) 60, 1351, 1512
DpnI GATC 8 cut(s) 67, 276, 468, 584, 939, 948, 1161, 1974
DpnII GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
Eam1104I CTCTTC 3 cut(s) 711, 975, 1164
EarI CTCTTC 3 cut(s) 711, 975, 1164
EciI GGCGGA 1 cut(s) 575
Eco105I TACGTA 2 cut(s) 1036, 1781
Eco130I CCWWGG 1 cut(s) 1699
Eco147I AGGCCT 1 cut(s) 1631
Eco31I GGTCTC 1 cut(s) 1070
Eco32I GATATC 2 cut(s) 119, 818
Eco47I GGWCC 3 cut(s) 838, 1214, 1508
Eco57I CTGAAG 2 cut(s) 324, 1443
Eco72I CACGTG 1 cut(s) 800
EcoNI CCTNNNNNAGG 1 cut(s) 1461
EcoO109I RGGNCCY 1 cut(s) 1508
EcoRII CCWGG 2 cut(s) 348, 919
EcoRV GATATC 2 cut(s) 119, 818
EcoT14I CCWWGG 1 cut(s) 1699
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 1699
FalI AAGNNNNNCTT 6 cut(s) 417, 449, 1463, 1495, 1826, 1858
FaqI GGGAC 1 cut(s) 1817
FauI CCCGC 1 cut(s) 608
FauNDI CATATG 3 cut(s) 496, 505, 1080
FblI GTMKAC 2 cut(s) 1336, 1621
Fnu4HI GCNGC 5 cut(s) 312, 357, 930, 1264, 1826
FokI GGATG 6 cut(s) 331, 522, 527, 836, 1664, 1733
Fsp4HI GCNGC 5 cut(s) 312, 357, 930, 1264, 1826
FspBI CTAG 2 cut(s) 260, 1682
GluI GCNGC 5 cut(s) 312, 357, 930, 1264, 1826
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 2 cut(s) 429, 1631
HapII CCGG 4 cut(s) 33, 272, 857, 944
HgaI GACGC 1 cut(s) 257
HinfI GANTC 9 cut(s) 216, 223, 291, 599, 685, 737, 1011, 1316, 1867
HpaII CCGG 4 cut(s) 33, 272, 857, 944
HphI GGTGA 5 cut(s) 248, 764, 1446, 1666, 1892
Hpy166II GTNNAC 4 cut(s) 157, 797, 1337, 1622
Hpy188I TCNGA 3 cut(s) 528, 1354, 1462
Hpy8I GTNNAC 4 cut(s) 157, 797, 1337, 1622
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 4 cut(s) 348, 1457, 1467, 1764
HpyCH4III ACNGT 6 cut(s) 477, 1024, 1214, 1397, 1832, 1946
HpyCH4IV ACGT 8 cut(s) 551, 712, 799, 1035, 1060, 1074, 1582, 1780
HpyF10VI GCNNNNNNNGC 3 cut(s) 430, 621, 1272
HpyF3I CTNAG 3 cut(s) 60, 1351, 1512
HpySE526I ACGT 8 cut(s) 551, 712, 799, 1035, 1060, 1074, 1582, 1780
Kpn2I TCCGGA 1 cut(s) 271
KspI CCGCGG 1 cut(s) 616
Kzo9I GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 2 cut(s) 1246, 1260
Lsp1109I GCAGC 4 cut(s) 298, 343, 1250, 1837
LweI GCATC 4 cut(s) 188, 353, 814, 1939
MabI ACCWGGT 1 cut(s) 919
MaeI CTAG 2 cut(s) 260, 1682
MaeII ACGT 8 cut(s) 551, 712, 799, 1035, 1060, 1074, 1582, 1780
MaeIII GTNAC 4 cut(s) 489, 557, 1452, 1672
MalI GATC 8 cut(s) 67, 276, 468, 584, 939, 948, 1161, 1974
MboI GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 4 cut(s) 65, 274, 582, 946
MhlI GDGCHC 2 cut(s) 61, 1766
MlyI GAGTC 4 cut(s) 285, 731, 1020, 1861
MmeI TCCRAC 1 cut(s) 506
Mph1103I ATGCAT 1 cut(s) 181
MroI TCCGGA 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 1315
MseI TTAA 8 cut(s) 744, 986, 1002, 1094, 1494, 1529, 1658, 1926
MslI CAYNNNNRTG 5 cut(s) 15, 192, 508, 1965, 2022
MspA1I CMGCKG 1 cut(s) 615
MspI CCGG 4 cut(s) 33, 272, 857, 944
MspR9I CCNGG 4 cut(s) 34, 350, 921, 944
MunI CAATTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 2 cut(s) 350, 921
MvnI CGCG 2 cut(s) 615, 958
MwoI GCNNNNNNNGC 3 cut(s) 430, 621, 1272
NciI CCSGG 2 cut(s) 34, 944
NcoI CCATGG 1 cut(s) 1699
NdeI CATATG 3 cut(s) 496, 505, 1080
NdeII GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 1923
NmuCI GTSAC 3 cut(s) 557, 1452, 1672
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 3 cut(s) 14, 882, 1696
PaeI GCATGC 1 cut(s) 1696
PagI TCATGA 2 cut(s) 1737, 2017
PceI AGGCCT 1 cut(s) 1631
PciI ACATGT 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 1164
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 1315
PfeI GAWTC 5 cut(s) 216, 223, 599, 685, 1316
PflFI GACNNNGTC 1 cut(s) 1617
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 5 cut(s) 313, 358, 931, 1265, 1827
PleI GAGTC 4 cut(s) 285, 731, 1019, 1861
PmaCI CACGTG 1 cut(s) 800
PmlI CACGTG 1 cut(s) 800
PpsI GAGTC 4 cut(s) 285, 731, 1019, 1861
Ppu21I YACGTR 3 cut(s) 800, 1036, 1781
PpuMI RGGWCCY 1 cut(s) 1508
PscI ACATGT 1 cut(s) 878
PshAI GACNNNNGTC 1 cut(s) 1513
PsiI TTATAA 1 cut(s) 1131
Psp5II RGGWCCY 1 cut(s) 1508
Psp6I CCWGG 2 cut(s) 348, 919
PspCI CACGTG 1 cut(s) 800
PspGI CCWGG 2 cut(s) 348, 919
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 838, 1214, 1508
PspPPI RGGWCCY 1 cut(s) 1508
PsuI RGATCY 4 cut(s) 65, 274, 582, 946
PsyI GACNNNGTC 1 cut(s) 1617
RseI CAYNNNNRTG 5 cut(s) 15, 192, 508, 1965, 2022
SacII CCGCGG 1 cut(s) 616
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 8 cut(s) 744, 986, 1002, 1094, 1494, 1529, 1658, 1926
SatI GCNGC 5 cut(s) 312, 357, 930, 1264, 1826
Sau3AI GATC 8 cut(s) 65, 274, 466, 582, 937, 946, 1159, 1972
Sau96I GGNCC 3 cut(s) 838, 1214, 1508
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 4 cut(s) 285, 731, 1020, 1861
ScrFI CCNGG 4 cut(s) 34, 350, 921, 944
SduI GDGCHC 2 cut(s) 61, 1766
SexAI ACCWGGT 1 cut(s) 919
SfaNI GCATC 4 cut(s) 188, 353, 814, 1939
SfcI CTRYAG 1 cut(s) 906
Sfr303I CCGCGG 1 cut(s) 616
SgrBI CCGCGG 1 cut(s) 616
SinI GGWCC 3 cut(s) 838, 1214, 1508
SmiMI CAYNNNNRTG 5 cut(s) 15, 192, 508, 1965, 2022
SmlI CTYRAG 3 cut(s) 1625, 1869, 1935
SmoI CTYRAG 3 cut(s) 1625, 1869, 1935
SnaBI TACGTA 2 cut(s) 1036, 1781
SphI GCATGC 1 cut(s) 1696
SseBI AGGCCT 1 cut(s) 1631
SsiI CCGC 5 cut(s) 586, 613, 615, 929, 1190
SspI AATATT 2 cut(s) 442, 1639
SspMI CTAG 2 cut(s) 260, 1682
StuI AGGCCT 1 cut(s) 1631
StyD4I CCNGG 4 cut(s) 32, 348, 919, 942
StyI CCWWGG 1 cut(s) 1699
TaaI ACNGT 6 cut(s) 477, 1024, 1214, 1397, 1832, 1946
TaiI ACGT 8 cut(s) 554, 715, 802, 1038, 1063, 1077, 1585, 1783
TaqI TCGA 5 cut(s) 15, 709, 1047, 1504, 1760
TatI WGTACW 4 cut(s) 129, 241, 412, 701
TauI GCSGC 1 cut(s) 932
TfiI GAWTC 5 cut(s) 216, 223, 599, 685, 1316
Tru1I TTAA 8 cut(s) 744, 986, 1002, 1094, 1494, 1529, 1658, 1926
Tru9I TTAA 8 cut(s) 744, 986, 1002, 1094, 1494, 1529, 1658, 1926
TscAI CASTG 1 cut(s) 1392
TseFI GTSAC 3 cut(s) 557, 1452, 1672
TseI GCWGC 4 cut(s) 311, 356, 1263, 1825
Tsp45I GTSAC 3 cut(s) 557, 1452, 1672
TspGWI ACGGA 2 cut(s) 741, 1828
TspRI CASTG 1 cut(s) 1392
Tth111I GACNNNGTC 1 cut(s) 1617
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 3 cut(s) 838, 1214, 1508
XagI CCTNNNNNAGG 1 cut(s) 1461
XapI RAATTY 7 cut(s) 960, 974, 1152, 1440, 1724, 1885, 1917
XceI RCATGY 3 cut(s) 14, 882, 1696
XmiI GTMKAC 2 cut(s) 1336, 1621
XmnI GAANNNNTTC 1 cut(s) 1315
XspI CTAG 2 cut(s) 260, 1682
ZrmI AGTACT 1 cut(s) 703
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.