Rorug04G0098800

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000080
Physical Location & Seq
Reverse (-)
15559533 .. 15562703
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0098800.1

Sequence Viewer

Length: 1269 bp
ATGGGTCTTCCTTCACTACTTAGCTCTGTTGTGCTTTTATGGATTCTTGCTTCATCTAGTTTTGGCATTGGGTATGGCCAAAATGGTAATCTTAGTGTACTTGATTTTGGTGCCTCCGGCGACGGCGTAGGAGATGATACCCAAGCTTTCTTGAATGCATGGAAGACACTTTGTACGACTGGCCAAACCCTAACTATTCCTGCGGGGAAGACCTTTGTACTCAAACCTCTTCAACTTGTAGGTCCTTGCAAATCCAGCAGTGTTGTAATTCAGATTGATGGGAATATTGTTGGTCCATCCACTCTTAGCGAATGGGCAGACGTGTGCAAAATGGGACAGTGCTGGCTATGCTTCCAAAACGTGAAGGGCCTCGTCATCAAAGGGGGAGGACTTATAGATGGCAAGGGTTCAATTTGGTGGAACCAAAAAACCCAATCCATAAATGAAGAGACTAAGCTGAGTTGCGGAGCACCCACGGCTTTACACTTCCACAAATGCGACCAACTTCAATTATCTGGATTTACTTCCCGTGATAGTCCGAGAGCTCATATATTTATACATAGCAGCAATGATGTGCGTATCTCAAACATTCATTTGAATGCACCGGAGAATAGCCCAAATACTGATGGCATCGGCATCTCTTTATCAAGCCAAGTAACCATACAAGACTCTTCCATTGGAACTGGTGATGATTGTATTGCAATTAAGGGAGGGTCCTCTTTTGTAAACGTAACTCATGTGACATGCGGACCGGGTCATGGTTTCAGTGTGGGTAGTTTAGGACAAGCTCCAGCTACTCCAGATAAAGTCGAACAAGTATACTTTCAAAATTGTATATGTGACAAAACGATGAACTGCGCAAGAATCAAAACATGGATGGGAGGATCTGGGAATGCTAGGGCGATTTTCTTCGAACAAATGACCCTTAAACAGTCAAATAATCCTATTGTGATTGACCAACACTACTGCGATGGTGCAGCTAATTGCCAAGCTAAGACTGGAGCGGTGAAAGTTAGTGACGTAACTTTCAGTGGCTTCACTGGAACTTCAGCAAGCGAGCAAGCAATAACACTGAATTGCTCCGACTTGGGTTGCACCAATATTTTGATGGATCATGTCATCCTAACCTCCGCAATCGGAAAACCACTTCATTCTGTATGCAACAAGGCCAGTGGGAAAGCTAGTTTTACTTCACCTCCCGTTCCTTGTCTGTCGTCGAAGCAATCCCTGCAGTCACCAACAATTGCACCAATCTCAATCACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

422

Amino Acids

44.33

Weight (kDa)

6.8

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 32 - 245 1e-07 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 61 - 390 1.2e-80 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 859
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 1004
AccI GTMKAC 1 cut(s) 819
AciI CCGC 5 cut(s) 203, 465, 747, 1004, 1131
AclWI GGATC 2 cut(s) 892, 1119
AcoI YGGCCR 2 cut(s) 76, 181
AcuI CTGAAG 1 cut(s) 1032
AfaI GTAC 3 cut(s) 99, 175, 219
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 6 cut(s) 154, 233, 411, 509, 598, 827
AjiI CACGTC 1 cut(s) 322
AluBI AGCT 9 cut(s) 24, 146, 457, 545, 788, 794, 980, 992, 1181
AluI AGCT 9 cut(s) 24, 146, 457, 545, 788, 794, 980, 992, 1181
Alw21I GWGCWC 2 cut(s) 472, 547
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 2 cut(s) 892, 1119
AoxI GGCC 4 cut(s) 76, 181, 367, 1167
ApeKI GCWGC 2 cut(s) 564, 977
AspLEI GCGC 1 cut(s) 860
AspS9I GGNCC 5 cut(s) 242, 293, 367, 714, 749
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 4 cut(s) 698, 1018, 1185, 1227
AsuII TTCGAA 1 cut(s) 912
AvaII GGWCC 4 cut(s) 242, 293, 714, 749
BalI TGGCCA 2 cut(s) 78, 183
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 547
BbsI GAAGAC 2 cut(s) 170, 215
Bbv12I GWGCWC 2 cut(s) 472, 547
BbvI GCAGC 2 cut(s) 576, 989
BccI CCATC 7 cut(s) 272, 304, 392, 620, 871, 965, 1102
BceAI ACGGC 2 cut(s) 139, 492
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 3 cut(s) 57, 897, 1182
BfmI CTRYAG 1 cut(s) 1229
BisI GCNGC 2 cut(s) 565, 978
BlsI GCNGC 2 cut(s) 566, 979
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 4 cut(s) 242, 293, 714, 749
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 5 cut(s) 242, 293, 367, 714, 749
BmiI GGNNCC 3 cut(s) 112, 422, 715
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 639, 645
BpiI GAAGAC 2 cut(s) 170, 215
BpmI CTGGAG 3 cut(s) 774, 783, 1020
Bpu14I TTCGAA 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 753
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 1180, 1210
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 5 cut(s) 184, 688, 1003, 1045, 1170
Bse3DI GCAATG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 3 cut(s) 296, 882, 1119
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 5 cut(s) 184, 688, 1003, 1045, 1170
BseXI GCAGC 2 cut(s) 576, 989
BsgI GTGCAG 1 cut(s) 996
BshFI GGCC 4 cut(s) 78, 183, 369, 1169
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 2 cut(s) 472, 547
BsiSI CCGG 3 cut(s) 117, 605, 752
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 3 cut(s) 160, 604, 898
BsnI GGCC 4 cut(s) 78, 183, 369, 1169
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 2 cut(s) 472, 547
Bsp143I GATC 2 cut(s) 884, 1111
BspACI CCGC 5 cut(s) 203, 465, 747, 1004, 1131
BspANI GGCC 4 cut(s) 78, 183, 369, 1169
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 112, 422, 715
BspMAI CTGCAG 1 cut(s) 1233
BspPI GGATC 2 cut(s) 892, 1119
BspT104I TTCGAA 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 1004
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 5 cut(s) 184, 688, 1003, 1045, 1170
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 2 cut(s) 884, 1111
BssNAI GTATAC 1 cut(s) 820
Bst1107I GTATAC 1 cut(s) 820
Bst4CI ACNGT 2 cut(s) 339, 933
Bst6I CTCTTC 3 cut(s) 234, 441, 676
BstAPI GCANNNNNTGC 1 cut(s) 1228
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 4 cut(s) 344, 1054, 1058, 1062
BstDEI CTNAG 6 cut(s) 20, 92, 305, 453, 458, 993
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 296, 882, 1119
BstHHI GCGC 1 cut(s) 860
BstKTI GATC 2 cut(s) 887, 1114
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 2 cut(s) 884, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 255, 348, 476, 1228
BstNSI RCATGY 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 1229
BstV1I GCAGC 2 cut(s) 576, 989
BstV2I GAAGAC 2 cut(s) 170, 215
BstX2I RGATCY 1 cut(s) 884
BstYI RGATCY 1 cut(s) 884
BstZ17I GTATAC 1 cut(s) 820
BsuRI GGCC 4 cut(s) 78, 183, 369, 1169
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 984
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 3 cut(s) 296, 882, 1119
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 7 cut(s) 265, 344, 772, 1036, 1038, 1070, 1177
Cac8I GCNNGC 4 cut(s) 344, 1054, 1058, 1062
CfoI GCGC 1 cut(s) 860
Cfr13I GGNCC 5 cut(s) 242, 293, 367, 714, 749
CpoI CGGWCCG 1 cut(s) 749
Csp6I GTAC 3 cut(s) 98, 174, 218
CspCI CAANNNNNGTGG 2 cut(s) 1153, 1188
CspI CGGWCCG 1 cut(s) 749
CviAII CATG 6 cut(s) 159, 737, 744, 758, 873, 1115
CviQI GTAC 3 cut(s) 98, 174, 218
DdeI CTNAG 6 cut(s) 20, 92, 305, 453, 458, 993
DpnI GATC 2 cut(s) 886, 1113
DpnII GATC 2 cut(s) 884, 1111
EaeI YGGCCR 2 cut(s) 76, 181
Eam1104I CTCTTC 3 cut(s) 234, 441, 676
EarI CTCTTC 3 cut(s) 234, 441, 676
Ecl136II GAGCTC 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 4 cut(s) 242, 293, 714, 749
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 1032
EcoICRI GAGCTC 1 cut(s) 545
EcoO109I RGGNCCY 3 cut(s) 242, 367, 714
EcoT22I ATGCAT 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 547
FaeI CATG 6 cut(s) 162, 740, 747, 761, 876, 1118
FaqI GGGAC 1 cut(s) 348
FatI CATG 6 cut(s) 158, 736, 743, 757, 872, 1114
FauI CCCGC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 2 cut(s) 565, 978
FokI GGATG 3 cut(s) 283, 889, 1106
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 2 cut(s) 565, 978
FspBI CTAG 3 cut(s) 57, 897, 1182
FspI TGCGCA 1 cut(s) 859
GlaI GCGC 1 cut(s) 859
GluI GCNGC 2 cut(s) 565, 978
GsuI CTGGAG 3 cut(s) 774, 783, 1020
HaeIII GGCC 4 cut(s) 78, 183, 369, 1169
HapII CCGG 3 cut(s) 117, 605, 752
HhaI GCGC 1 cut(s) 860
Hin1II CATG 6 cut(s) 162, 740, 747, 761, 876, 1118
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 3 cut(s) 43, 668, 864
HpaII CCGG 3 cut(s) 117, 605, 752
HphI GGTGA 4 cut(s) 698, 1018, 1185, 1227
Hpy166II GTNNAC 3 cut(s) 98, 727, 820
Hpy188I TCNGA 4 cut(s) 273, 540, 1084, 1139
Hpy188III TCNNGA 3 cut(s) 151, 516, 800
Hpy8I GTNNAC 3 cut(s) 98, 727, 820
Hpy99I CGWCG 2 cut(s) 125, 1219
HpyAV CCTTC 2 cut(s) 21, 358
HpyCH4III ACNGT 2 cut(s) 339, 933
HpyCH4IV ACGT 4 cut(s) 321, 360, 729, 1020
HpyF10VI GCNNNNNNNGC 4 cut(s) 255, 348, 476, 1228
HpyF3I CTNAG 6 cut(s) 20, 92, 305, 453, 458, 993
HpySE526I ACGT 4 cut(s) 321, 360, 729, 1020
Hsp92II CATG 6 cut(s) 162, 740, 747, 761, 876, 1118
HspAI GCGC 1 cut(s) 858
Kzo9I GATC 2 cut(s) 884, 1111
LmnI GCTCC 4 cut(s) 467, 793, 1001, 1085
Lsp1109I GCAGC 2 cut(s) 576, 989
LweI GCATC 2 cut(s) 639, 645
MaeI CTAG 3 cut(s) 57, 897, 1182
MaeII ACGT 4 cut(s) 321, 360, 729, 1020
MaeIII GTNAC 7 cut(s) 655, 730, 739, 839, 1016, 1021, 1233
MalI GATC 2 cut(s) 886, 1113
MbiI CCGCTC 1 cut(s) 1004
MboI GATC 2 cut(s) 884, 1111
MboII GAAGA 6 cut(s) 175, 220, 221, 458, 663, 901
MfeI CAATTG 1 cut(s) 1242
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 2 cut(s) 472, 547
MlsI TGGCCA 2 cut(s) 78, 183
MluCI AATT 8 cut(s) 267, 411, 509, 702, 829, 982, 1075, 1242
MluNI TGGCCA 2 cut(s) 78, 183
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 1107
MnlI CCTC 9 cut(s) 124, 237, 380, 380, 704, 727, 875, 1138, 1206
Mox20I TGGCCA 2 cut(s) 78, 183
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 2 cut(s) 78, 183
MseI TTAA 3 cut(s) 705, 927, 1267
MslI CAYNNNNRTG 1 cut(s) 597
Msp20I TGGCCA 2 cut(s) 78, 183
MspI CCGG 3 cut(s) 117, 605, 752
MspR9I CCNGG 1 cut(s) 753
MunI CAATTG 1 cut(s) 1242
Mva1269I GAATGC 3 cut(s) 160, 604, 898
MwoI GCNNNNNNNGC 4 cut(s) 255, 348, 476, 1228
NciI CCSGG 1 cut(s) 753
NdeII GATC 2 cut(s) 884, 1111
NlaIII CATG 6 cut(s) 162, 740, 747, 761, 876, 1118
NlaIV GGNNCC 3 cut(s) 112, 422, 715
NmuCI GTSAC 4 cut(s) 739, 839, 1016, 1233
NsbI TGCGCA 1 cut(s) 859
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 747
NspV TTCGAA 1 cut(s) 912
PctI GAATGC 3 cut(s) 160, 604, 898
PfeI GAWTC 2 cut(s) 43, 864
PflFI GACNNNGTC 1 cut(s) 753
PkrI GCNGC 2 cut(s) 566, 979
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
PpuMI RGGWCCY 2 cut(s) 242, 714
Psp124BI GAGCTC 1 cut(s) 547
Psp5II RGGWCCY 2 cut(s) 242, 714
PspN4I GGNNCC 3 cut(s) 112, 422, 715
PspPI GGNCC 5 cut(s) 242, 293, 367, 714, 749
PspPPI RGGWCCY 2 cut(s) 242, 714
PstI CTGCAG 1 cut(s) 1233
PsuI RGATCY 1 cut(s) 884
PsyI GACNNNGTC 1 cut(s) 753
RsaI GTAC 3 cut(s) 99, 175, 219
RsaNI GTAC 3 cut(s) 98, 174, 218
RseI CAYNNNNRTG 1 cut(s) 597
Rsr2I CGGWCCG 1 cut(s) 749
RsrII CGGWCCG 1 cut(s) 749
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 3 cut(s) 705, 927, 1267
SatI GCNGC 2 cut(s) 565, 978
Sau3AI GATC 2 cut(s) 884, 1111
Sau96I GGNCC 5 cut(s) 242, 293, 367, 714, 749
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 2 cut(s) 472, 547
SfaNI GCATC 2 cut(s) 639, 645
SfcI CTRYAG 1 cut(s) 1229
SfuI TTCGAA 1 cut(s) 912
SinI GGWCC 4 cut(s) 242, 293, 714, 749
SmiMI CAYNNNNRTG 1 cut(s) 597
Sse9I AATT 8 cut(s) 267, 411, 509, 702, 829, 982, 1075, 1242
SsiI CCGC 5 cut(s) 203, 465, 747, 1004, 1131
SspI AATATT 2 cut(s) 286, 1102
SspMI CTAG 3 cut(s) 57, 897, 1182
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 751
TaaI ACNGT 2 cut(s) 339, 933
TaiI ACGT 4 cut(s) 324, 363, 732, 1023
TaqI TCGA 3 cut(s) 810, 912, 1217
TasI AATT 8 cut(s) 267, 411, 509, 702, 829, 982, 1075, 1242
TatI WGTACW 2 cut(s) 97, 217
TfiI GAWTC 2 cut(s) 43, 864
Tru1I TTAA 3 cut(s) 705, 927, 1267
Tru9I TTAA 3 cut(s) 705, 927, 1267
TscAI CASTG 7 cut(s) 265, 344, 772, 1036, 1045, 1077, 1177
TseFI GTSAC 4 cut(s) 739, 839, 1016, 1233
TseI GCWGC 2 cut(s) 564, 977
Tsp45I GTSAC 4 cut(s) 739, 839, 1016, 1233
TspDTI ATGAA 5 cut(s) 42, 459, 581, 866, 1139
TspRI CASTG 7 cut(s) 265, 344, 772, 1036, 1045, 1077, 1177
Tth111I GACNNNGTC 1 cut(s) 753
VpaK11BI GGWCC 4 cut(s) 242, 293, 714, 749
XceI RCATGY 1 cut(s) 747
XcmI CCANNNNNNNNNTGG 2 cut(s) 995, 1105
XmiI GTMKAC 1 cut(s) 819
XspI CTAG 3 cut(s) 57, 897, 1182
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.