Rorug04G0098600

G-quadruplex DNA unwinding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000080
Physical Location & Seq
Reverse (-)
15500908 .. 15505153
4246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0098600.1

Sequence Viewer

Length: 1461 bp
ATGGCCACCGCCCAACCCTCCGAGAACGGCTCCGCCAAGGCTCCGGAACCCGACCCGCGACCCGAACCCGTCACCGAATCCGCCACAACTGCCGCGCCCGACTCCGACCCGTCCACCACTACAATCGATAACAACCAAAATCGGAACCCCGACTCCGAATCCGCTCCTTCCGAGGCTCCGGTGATGACTTCCAGCAGCGATGCCGTGTCCGCCGCCGATAAAAGATGGCCGGGGTGGCCCGGCGACTGTGTTTTCCGGCTGATTGTGCCGGTTCTTAAGGTCGGGAGCATTATCGGCCGGAAAGGCGAGCTCATTAAGAAGATGTGTGAGGAGACAAGAGCTCGCATTCGCGTCCTTGACGGCGCCGCAGGGACTACTGATCGCATCGTGCTGATCTCCGGAAGGGAAGAGCCAGAGGCTCCTCTTTCCCCTGCAATGGATGCTGTCATAAGAGTATTCAAACGTGTCGCTGGATTATCTGAGAGTGCAGGCGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACTGCTGCTTCTGTGCGAGTATTATCTGGAGAAGAGGTTCCATTCTATGCTGCCGCTGATGAGAGGATTATTGAAATGCAGGGAGAAACCTTAAAGGTGCTCAAAGCTCTAGAAGCAGTAGTGTCTCACCTGAGGAAGTTTTTGGTCGATCATAGTGTTCTTCCTCTTTTTGAGAAAACTTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACGCGGGAATCTTTGTTTCTCAGCCGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACGTTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGAGTTGAAGGGAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGAGGTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTATGATGCGTATGGAAATTCAATACCATCACAACAACCTTATGGATCTTCCGGTCTAGGAGGAGGCTACAGCACATTCCGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

486

Amino Acids

51.66

Weight (kDa)

5.03

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 85 - 137 1.2e-12 KH domain
KH_1 PF00013 179 - 245 2.9e-10 KH domain
KH_1 PF00013 352 - 416 3.9e-11 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1023
AccB1I GGYRCC 2 cut(s) 362, 1205
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 4 cut(s) 58, 95, 351, 907
AccIII TCCGGA 2 cut(s) 43, 398
AclWI GGATC 4 cut(s) 595, 824, 1278, 1426
AcoI YGGCCR 4 cut(s) 3, 227, 295, 1021
AcsI RAATTY 4 cut(s) 1068, 1121, 1275, 1390
AcuI CTGAAG 2 cut(s) 996, 1341
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 2 cut(s) 616, 1158
AfiI CCNNNNNNNGG 4 cut(s) 436, 544, 962, 1311
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 6 cut(s) 460, 689, 1002, 1106, 1121, 1395
AjnI CCWGG 2 cut(s) 833, 1027
AloI GAACNNNNNNTCC 4 cut(s) 137, 169, 636, 668
AluBI AGCT 5 cut(s) 310, 341, 722, 902, 1287
AluI AGCT 5 cut(s) 310, 341, 722, 902, 1287
Alw21I GWGCWC 4 cut(s) 312, 343, 717, 1036
Alw26I GTCTC 2 cut(s) 326, 744
AlwI GGATC 4 cut(s) 595, 824, 1278, 1426
Aor13HI TCCGGA 2 cut(s) 43, 398
AoxI GGCC 5 cut(s) 3, 227, 236, 295, 1021
ApeKI GCWGC 5 cut(s) 195, 512, 620, 665, 1284
ApoI RAATTY 4 cut(s) 1068, 1121, 1275, 1390
AseI ATTAAT 2 cut(s) 567, 593
Asp700I GAANNNNTTC 2 cut(s) 651, 1125
AspLEI GCGC 2 cut(s) 97, 365
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 2 cut(s) 231, 240
AsuHPI GGTGA 3 cut(s) 64, 193, 734
AxyI CCTNAGG 1 cut(s) 746
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 362, 1205
BanII GRGCYC 2 cut(s) 312, 343
BarI GAAGNNNNNNTAC 2 cut(s) 607, 639
Bbv12I GWGCWC 4 cut(s) 312, 343, 717, 1036
BbvCI CCTCAGC 1 cut(s) 1086
BbvI GCAGC 5 cut(s) 207, 499, 607, 652, 1296
BccI CCATC 5 cut(s) 219, 542, 964, 1291, 1408
BceAI ACGGC 5 cut(s) 43, 188, 376, 912, 1008
BciT130I CCWGG 2 cut(s) 835, 1029
BciVI GTATCC 2 cut(s) 1294, 1372
BcnI CCSGG 2 cut(s) 231, 240
BcoDI GTCTC 2 cut(s) 326, 744
BfaI CTAG 2 cut(s) 725, 1430
BfmI CTRYAG 1 cut(s) 1441
BfoI RGCGCY 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 2 cut(s) 1294, 1372
BglI GCCNNNNNGGC 2 cut(s) 235, 303
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 4 cut(s) 231, 240, 835, 1029
BmgT120I GGNCC 1 cut(s) 237
BmrFI CCNGG 4 cut(s) 231, 240, 835, 1029
BmsI GCATC 5 cut(s) 190, 393, 430, 560, 1369
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 4 cut(s) 537, 663, 789, 894
Bpu10I CCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 2 cut(s) 231, 240
Bsa29I ATCGAT 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 5 cut(s) 36, 171, 230, 833, 834
BsaWI WCCGGW 5 cut(s) 43, 178, 398, 1304, 1424
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 636, 666
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 544, 962, 1311
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 806, 877
Bse21I CCTNAGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 441
BseAI TCCGGA 2 cut(s) 43, 398
BseBI CCWGG 2 cut(s) 835, 1029
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 5 cut(s) 36, 171, 230, 833, 834
BseGI GGATG 6 cut(s) 445, 534, 551, 956, 1302, 1316
BseLI CCNNNNNNNGG 4 cut(s) 436, 544, 962, 1311
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 6 cut(s) 471, 737, 937, 1061, 1077, 1340
BseNI ACTGG 2 cut(s) 806, 877
BseRI GAGGAG 4 cut(s) 344, 411, 1126, 1449
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 5 cut(s) 207, 499, 607, 652, 1296
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 4 cut(s) 58, 95, 351, 907
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 5 cut(s) 5, 229, 238, 297, 1023
BshNI GGYRCC 2 cut(s) 362, 1205
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 4 cut(s) 312, 343, 717, 1036
BslFI GGGAC 2 cut(s) 385, 1185
BslI CCNNNNNNNGG 4 cut(s) 436, 544, 962, 1311
BsmAI GTCTC 2 cut(s) 326, 744
BsmFI GGGAC 2 cut(s) 385, 1185
BsmI GAATGC 2 cut(s) 345, 524
BsnI GGCC 5 cut(s) 5, 229, 238, 297, 1023
Bsp1286I GDGCHC 4 cut(s) 312, 343, 717, 1036
Bsp13I TCCGGA 2 cut(s) 43, 398
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
BspANI GGCC 5 cut(s) 5, 229, 238, 297, 1023
BspCNI CTCAG 6 cut(s) 472, 738, 936, 1060, 1078, 1339
BspDI ATCGAT 1 cut(s) 126
BspEI TCCGGA 2 cut(s) 43, 398
BspFNI CGCG 4 cut(s) 58, 95, 351, 907
BspPI GGATC 4 cut(s) 595, 824, 1278, 1426
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 362, 1205
BspTI CTTAAG 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 1156
BsrI ACTGG 2 cut(s) 806, 877
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 5 cut(s) 36, 171, 230, 833, 834
BssMI GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 835, 1029
Bst4CI ACNGT 3 cut(s) 248, 1156, 1192
Bst6I CTCTTC 3 cut(s) 402, 642, 1360
BstACI GRCGYC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 275
BstAPI GCANNNNNTGC 2 cut(s) 440, 1063
BstAUI TGTACA 1 cut(s) 1156
BstC8I GCNNGC 3 cut(s) 308, 343, 490
BstDEI CTNAG 6 cut(s) 480, 746, 923, 1047, 1086, 1326
BstF5I GGATG 6 cut(s) 445, 534, 551, 956, 1302, 1316
BstFNI CGCG 4 cut(s) 58, 95, 351, 907
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 2 cut(s) 97, 365
BstKTI GATC 7 cut(s) 382, 396, 590, 766, 832, 1273, 1421
BstMAI GTCTC 2 cut(s) 326, 744
BstMBI GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
BstMCI CGRYCG 1 cut(s) 298
BstNI CCWGG 2 cut(s) 835, 1029
BstSCI CCNGG 4 cut(s) 229, 238, 833, 1027
BstSFI CTRYAG 1 cut(s) 1441
BstUI CGCG 4 cut(s) 58, 95, 351, 907
BstV1I GCAGC 5 cut(s) 207, 499, 607, 652, 1296
BstX2I RGATCY 2 cut(s) 829, 1418
BstXI CCANNNNNNTGG 1 cut(s) 834
BstYI RGATCY 2 cut(s) 829, 1418
BstZI CGGCCG 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 746
BsuI GTATCC 2 cut(s) 1294, 1372
BsuRI GGCC 5 cut(s) 5, 229, 238, 297, 1023
BsuTUI ATCGAT 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 6 cut(s) 445, 534, 551, 956, 1302, 1316
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 2 cut(s) 798, 1197
Cac8I GCNNGC 3 cut(s) 308, 343, 490
CfoI GCGC 2 cut(s) 97, 365
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 615, 1157
CviQI GTAC 2 cut(s) 615, 1157
DdeI CTNAG 6 cut(s) 480, 746, 923, 1047, 1086, 1326
DinI GGCGCC 1 cut(s) 364
DpnI GATC 7 cut(s) 381, 395, 589, 765, 831, 1272, 1420
DpnII GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
DrdI GACNNNNNNGTC 1 cut(s) 1023
DseDI GACNNNNNNGTC 1 cut(s) 1023
EaeI YGGCCR 4 cut(s) 3, 227, 295, 1021
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 3 cut(s) 402, 642, 1360
EarI CTCTTC 3 cut(s) 402, 642, 1360
EciI GGCGGA 3 cut(s) 22, 70, 199
Ecl136II GAGCTC 2 cut(s) 310, 341
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 2 cut(s) 312, 343
Eco52I CGGCCG 1 cut(s) 295
Eco53kI GAGCTC 2 cut(s) 310, 341
Eco57I CTGAAG 2 cut(s) 996, 1341
Eco81I CCTNAGG 1 cut(s) 746
EcoICRI GAGCTC 2 cut(s) 310, 341
EcoRII CCWGG 2 cut(s) 833, 1027
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 312, 343
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 36
FaqI GGGAC 2 cut(s) 385, 1185
FauI CCCGC 2 cut(s) 63, 900
FokI GGATG 6 cut(s) 452, 521, 538, 943, 1303, 1309
FriOI GRGCYC 2 cut(s) 312, 343
FspBI CTAG 2 cut(s) 725, 1430
GlaI GCGC 2 cut(s) 96, 364
GsuI CTGGAG 4 cut(s) 537, 663, 789, 894
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 5 cut(s) 5, 229, 238, 297, 1023
HgaI GACGC 1 cut(s) 340
HhaI GCGC 2 cut(s) 97, 365
Hin1I GRCGYC 1 cut(s) 363
Hin6I GCGC 2 cut(s) 95, 363
HinP1I GCGC 2 cut(s) 95, 363
HincII GTYRAC 1 cut(s) 1152
HindII GTYRAC 1 cut(s) 1152
HinfI GANTC 9 cut(s) 77, 101, 152, 158, 911, 932, 944, 1240, 1334
HpaI GTTAAC 1 cut(s) 1152
HphI GGTGA 3 cut(s) 64, 193, 734
Hpy166II GTNNAC 2 cut(s) 114, 1152
Hpy188I TCNGA 7 cut(s) 22, 106, 144, 157, 172, 481, 1050
Hpy188III TCNNGA 9 cut(s) 44, 283, 399, 642, 725, 815, 963, 1014, 1244
Hpy8I GTNNAC 2 cut(s) 114, 1152
Hpy99I CGWCG 1 cut(s) 1134
HpyAV CCTTC 4 cut(s) 177, 396, 1100, 1359
HpyCH4III ACNGT 3 cut(s) 248, 1156, 1192
HpyCH4IV ACGT 2 cut(s) 463, 1006
HpyCH4V TGCA 6 cut(s) 434, 488, 524, 694, 863, 1066
HpyF3I CTNAG 6 cut(s) 480, 746, 923, 1047, 1086, 1326
HpySE526I ACGT 2 cut(s) 463, 1006
Hsp92I GRCGYC 1 cut(s) 363
HspAI GCGC 2 cut(s) 95, 363
KasI GGCGCC 1 cut(s) 362
Kpn2I TCCGGA 2 cut(s) 43, 398
KspAI GTTAAC 1 cut(s) 1152
Kzo9I GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 9 cut(s) 35, 46, 169, 181, 285, 424, 808, 1039, 1142
Lsp1109I GCAGC 5 cut(s) 207, 499, 607, 652, 1296
LweI GCATC 5 cut(s) 190, 393, 430, 560, 1369
MaeI CTAG 2 cut(s) 725, 1430
MaeII ACGT 2 cut(s) 463, 1006
MaeIII GTNAC 2 cut(s) 70, 1042
MalI GATC 7 cut(s) 381, 395, 589, 765, 831, 1272, 1420
MbiI CCGCTC 1 cut(s) 164
MboI GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
MboII GAAGA 8 cut(s) 331, 419, 659, 767, 990, 1002, 1347, 1413
MfeI CAATTG 1 cut(s) 938
MflI RGATCY 2 cut(s) 829, 1418
MhlI GDGCHC 4 cut(s) 312, 343, 717, 1036
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 568, 573, 886, 938, 1068, 1121, 1185, 1275, 1390
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 3 cut(s) 95, 146, 941
MmeI TCCRAC 1 cut(s) 129
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 43, 398
MroXI GAANNNNTTC 2 cut(s) 651, 1125
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 276, 315, 567, 572, 593, 707, 1151
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 671
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 4 cut(s) 231, 240, 835, 1029
MunI CAATTG 1 cut(s) 938
Mva1269I GAATGC 2 cut(s) 345, 524
MvaI CCWGG 2 cut(s) 835, 1029
MvnI CGCG 4 cut(s) 58, 95, 351, 907
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 2 cut(s) 231, 240
NdeII GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
NmuCI GTSAC 1 cut(s) 70
PasI CCCWGGG 1 cut(s) 834
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 2 cut(s) 345, 524
PdmI GAANNNNTTC 2 cut(s) 651, 1125
PfeI GAWTC 6 cut(s) 77, 158, 911, 944, 1240, 1334
PflMI CCANNNNNTGG 1 cut(s) 962
PleI GAGTC 3 cut(s) 95, 146, 940
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 3 cut(s) 95, 146, 940
PshBI ATTAAT 2 cut(s) 567, 593
Psp124BI GAGCTC 2 cut(s) 312, 343
Psp6I CCWGG 2 cut(s) 833, 1027
PspGI CCWGG 2 cut(s) 833, 1027
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 2 cut(s) 829, 1418
RsaI GTAC 2 cut(s) 616, 1158
RsaNI GTAC 2 cut(s) 615, 1157
SacI GAGCTC 2 cut(s) 312, 343
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 7 cut(s) 276, 315, 567, 572, 593, 707, 1151
Sau3AI GATC 7 cut(s) 379, 393, 587, 763, 829, 1270, 1418
Sau96I GGNCC 1 cut(s) 237
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 3 cut(s) 95, 146, 941
ScrFI CCNGG 4 cut(s) 231, 240, 835, 1029
SduI GDGCHC 4 cut(s) 312, 343, 717, 1036
SfaNI GCATC 5 cut(s) 190, 393, 430, 560, 1369
SfcI CTRYAG 1 cut(s) 1441
SfiI GGCCNNNNNGGCC 1 cut(s) 235
SfoI GGCGCC 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 275, 813
SmoI CTYRAG 2 cut(s) 275, 813
Sse9I AATT 9 cut(s) 568, 573, 886, 938, 1068, 1121, 1185, 1275, 1390
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 2 cut(s) 725, 1430
SstI GAGCTC 2 cut(s) 312, 343
StyD4I CCNGG 4 cut(s) 229, 238, 833, 1027
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 248, 1156, 1192
TaiI ACGT 2 cut(s) 466, 1009
TaqI TCGA 2 cut(s) 126, 762
TasI AATT 9 cut(s) 568, 573, 886, 938, 1068, 1121, 1185, 1275, 1390
TatI WGTACW 2 cut(s) 614, 1156
TauI GCSGC 5 cut(s) 95, 215, 368, 671, 1229
TfiI GAWTC 6 cut(s) 77, 158, 911, 944, 1240, 1334
Tru1I TTAA 7 cut(s) 276, 315, 567, 572, 593, 707, 1151
Tru9I TTAA 7 cut(s) 276, 315, 567, 572, 593, 707, 1151
TscAI CASTG 2 cut(s) 805, 1197
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 5 cut(s) 195, 512, 620, 665, 1284
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 845, 1197
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 805, 1197
Van91I CCANNNNNTGG 1 cut(s) 962
Vha464I CTTAAG 1 cut(s) 275
VspI ATTAAT 2 cut(s) 567, 593
XapI RAATTY 4 cut(s) 1068, 1121, 1275, 1390
XbaI TCTAGA 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmnI GAANNNNTTC 2 cut(s) 651, 1125
XspI CTAG 2 cut(s) 725, 1430
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.