Rh6AG400700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000080
Physical Location & Seq
Reverse (-)
59786550 .. 59801629
15080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG400700.1

Sequence Viewer

Length: 468 bp
ATGCATAATAACTTGACAATAATATTTCCGTATACACTTTTTAACTCTTCACCGAGGGAAGTTTATAGGCAAAAATATTGCCGTAATACCTCCTTTGTAGAGAAACACTGGAATGAGCATGGAAAACCTGCTATAGAGGTGGTGATTCAGAAGGATATGTTTGTTGGAACAAGGGACAACGTTGAAAACCAATCTTGGTCTTCAGACCAAGATAGTAGAAGCATCCATTCATTTTATGATATTGCTGCTAATCCACTTGATAAACAAGCATCCGGATCAAAATCTGATAAGAGGAAGCGATTAATGTTAGAGAGTTCCGTTGATAACAGTATTCAAGTGAGAGCATCACTACTAAAATCAGACAAGAGGAGGCAGTTAATATCACAAGGTGGAGTTAATAATGAGTGCATGAACAATTTACCTGGTGTACATACAAGGGAGTCAACTAGGTTTAGCACTAGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.81

Weight (kDa)

9.36

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 272
AclI AACGTT 1 cut(s) 180
AclWI GGATC 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 429
AgsI TTSAA 2 cut(s) 185, 335
AjnI CCWGG 1 cut(s) 421
AlwI GGATC 1 cut(s) 283
Aor13HI TCCGGA 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 42, 154
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 423
BfaI CTAG 2 cut(s) 447, 459
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 231, 278, 353
BpiI GAAGAC 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 222, 269
BseJI GATNNNNATC 1 cut(s) 280
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 1 cut(s) 275
BspEI TCCGGA 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 275
BssNAI GTATAC 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 427
BstF5I GGATG 2 cut(s) 222, 269
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 222, 269
BtsIMutI CAGTG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 136
CsiI ACCWGGT 1 cut(s) 421
Csp6I GTAC 1 cut(s) 428
CviAII CATG 2 cut(s) 119, 409
CviJI RGCY 1 cut(s) 462
CviKI_1 RGCY 1 cut(s) 462
CviQI GTAC 1 cut(s) 428
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
DraIII CACNNNGTG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 122, 412
FaiI YATR 9 cut(s) 6, 33, 66, 120, 134, 158, 237, 410, 432
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 118, 408
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 209, 256
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 447, 459
GluI GCNGC 1 cut(s) 246
HapII CCGG 1 cut(s) 273
Hin1II CATG 2 cut(s) 122, 412
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 2 cut(s) 145, 440
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 42, 154
Hpy166II GTNNAC 3 cut(s) 33, 428, 444
Hpy188I TCNGA 4 cut(s) 150, 205, 286, 361
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 3 cut(s) 33, 428, 444
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 4, 408
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 122, 412
Kpn2I TCCGGA 1 cut(s) 272
Kzo9I GATC 1 cut(s) 275
LpnPI CCDG 5 cut(s) 94, 141, 286, 408, 435
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 3 cut(s) 231, 278, 353
MabI ACCWGGT 1 cut(s) 421
MaeI CTAG 2 cut(s) 447, 459
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MboII GAAGA 2 cut(s) 39, 192
MluCI AATT 1 cut(s) 415
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 6 cut(s) 48, 100, 130, 285, 360, 363
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 272
MseI TTAA 4 cut(s) 42, 302, 377, 396
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
NdeII GATC 1 cut(s) 275
NlaIII CATG 2 cut(s) 122, 412
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 4 cut(s) 42, 302, 377, 396
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 275
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 423
SetI ASST 7 cut(s) 92, 130, 141, 183, 391, 424, 452
SexAI ACCWGGT 1 cut(s) 421
SfaNI GCATC 3 cut(s) 231, 278, 353
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 415
SspI AATATT 2 cut(s) 24, 77
SspMI CTAG 2 cut(s) 447, 459
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 1 cut(s) 183
TasI AATT 1 cut(s) 415
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 4 cut(s) 42, 302, 377, 396
Tru9I TTAA 4 cut(s) 42, 302, 377, 396
TscAI CASTG 1 cut(s) 113
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 219, 425
TspGWI ACGGA 2 cut(s) 18, 307
TspRI CASTG 1 cut(s) 113
VspI ATTAAT 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 2 cut(s) 447, 459
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.