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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 690 |
| Acc36I | ACCTGC | 1 cut(s) | 438 |
| AccI | GTMKAC | 1 cut(s) | 349 |
| AciI | CCGC | 2 cut(s) | 246, 267 |
| AclWI | GGATC | 4 cut(s) | 172, 185, 241, 309 |
| AcsI | RAATTY | 1 cut(s) | 500 |
| AfaI | GTAC | 1 cut(s) | 576 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 158, 216 |
| AgsI | TTSAA | 3 cut(s) | 622, 718, 746 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 145, 177 |
| AluBI | AGCT | 4 cut(s) | 391, 563, 629, 733 |
| AluI | AGCT | 4 cut(s) | 391, 563, 629, 733 |
| Alw21I | GWGCWC | 3 cut(s) | 204, 393, 735 |
| Alw26I | GTCTC | 2 cut(s) | 602, 674 |
| AlwI | GGATC | 4 cut(s) | 172, 185, 241, 309 |
| Ama87I | CYCGRG | 3 cut(s) | 157, 172, 197 |
| AoxI | GGCC | 1 cut(s) | 169 |
| ApaI | GGGCCC | 1 cut(s) | 173 |
| ApoI | RAATTY | 1 cut(s) | 500 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 601, 633 |
| AseI | ATTAAT | 2 cut(s) | 366, 377 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 2 cut(s) | 169, 170 |
| AsuC2I | CCSGG | 2 cut(s) | 458, 659 |
| AsuII | TTCGAA | 1 cut(s) | 129 |
| AvaI | CYCGRG | 3 cut(s) | 157, 172, 197 |
| BaeGI | GKGCMC | 1 cut(s) | 173 |
| BamHI | GGATCC | 1 cut(s) | 177 |
| BanII | GRGCYC | 3 cut(s) | 173, 393, 735 |
| BbsI | GAAGAC | 2 cut(s) | 137, 435 |
| Bbv12I | GWGCWC | 3 cut(s) | 204, 393, 735 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 173, 207 |
| BcnI | CCSGG | 2 cut(s) | 458, 659 |
| BcoDI | GTCTC | 2 cut(s) | 602, 674 |
| BfaI | CTAG | 2 cut(s) | 419, 590 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BfuAI | ACCTGC | 1 cut(s) | 438 |
| BglII | AGATCT | 1 cut(s) | 415 |
| Bme1390I | CCNGG | 2 cut(s) | 458, 659 |
| BmeT110I | CYCGRG | 3 cut(s) | 157, 172, 197 |
| BmgT120I | GGNCC | 2 cut(s) | 169, 170 |
| BmiI | GGNNCC | 3 cut(s) | 163, 171, 179 |
| BmrFI | CCNGG | 2 cut(s) | 458, 659 |
| BmsI | GCATC | 2 cut(s) | 19, 748 |
| BpiI | GAAGAC | 2 cut(s) | 137, 435 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 191, 223 |
| Bpu14I | TTCGAA | 1 cut(s) | 129 |
| BpuMI | CCSGG | 2 cut(s) | 458, 659 |
| BsaJI | CCNNGG | 2 cut(s) | 165, 173 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 158, 216 |
| BseDI | CCNNGG | 2 cut(s) | 165, 173 |
| BseGI | GGATG | 2 cut(s) | 34, 339 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 158, 216 |
| BseRI | GAGGAG | 1 cut(s) | 303 |
| BseSI | GKGCMC | 1 cut(s) | 173 |
| BsgI | GTGCAG | 1 cut(s) | 544 |
| BshFI | GGCC | 1 cut(s) | 171 |
| BsiHKAI | GWGCWC | 3 cut(s) | 204, 393, 735 |
| BsiHKCI | CYCGRG | 3 cut(s) | 157, 172, 197 |
| BsiSI | CCGG | 3 cut(s) | 217, 457, 658 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 158, 216 |
| BsmAI | GTCTC | 2 cut(s) | 602, 674 |
| BsmBI | CGTCTC | 1 cut(s) | 602 |
| BsnI | GGCC | 1 cut(s) | 171 |
| BsoBI | CYCGRG | 3 cut(s) | 157, 172, 197 |
| Bsp119I | TTCGAA | 1 cut(s) | 129 |
| Bsp120I | GGGCCC | 1 cut(s) | 169 |
| Bsp1286I | GDGCHC | 4 cut(s) | 173, 204, 393, 735 |
| Bsp143I | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| BspACI | CCGC | 2 cut(s) | 246, 267 |
| BspANI | GGCC | 1 cut(s) | 171 |
| BspLI | GGNNCC | 3 cut(s) | 163, 171, 179 |
| BspMI | ACCTGC | 1 cut(s) | 438 |
| BspPI | GGATC | 4 cut(s) | 172, 185, 241, 309 |
| BspT104I | TTCGAA | 1 cut(s) | 129 |
| BssECI | CCNNGG | 2 cut(s) | 165, 173 |
| BssMI | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| BssT1I | CCWWGG | 1 cut(s) | 165 |
| Bst6I | CTCTTC | 1 cut(s) | 131 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 453 |
| BstBI | TTCGAA | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstDEI | CTNAG | 2 cut(s) | 353, 625 |
| BstF5I | GGATG | 2 cut(s) | 34, 339 |
| BstKTI | GATC | 6 cut(s) | 180, 236, 304, 397, 418, 650 |
| BstMAI | GTCTC | 2 cut(s) | 602, 674 |
| BstMBI | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 453 |
| BstSCI | CCNGG | 2 cut(s) | 456, 657 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstSLI | GKGCMC | 1 cut(s) | 173 |
| BstV2I | GAAGAC | 2 cut(s) | 137, 435 |
| BstX2I | RGATCY | 2 cut(s) | 177, 415 |
| BstYI | RGATCY | 2 cut(s) | 177, 415 |
| BsuRI | GGCC | 1 cut(s) | 171 |
| BtsCI | GGATG | 2 cut(s) | 34, 339 |
| BveI | ACCTGC | 1 cut(s) | 438 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 2 cut(s) | 169, 170 |
| Csp6I | GTAC | 1 cut(s) | 575 |
| CviAII | CATG | 1 cut(s) | 467 |
| CviJI | RGCY | 8 cut(s) | 171, 216, 361, 391, 515, 563, 629, 733 |
| CviKI_1 | RGCY | 8 cut(s) | 171, 216, 361, 391, 515, 563, 629, 733 |
| CviQI | GTAC | 1 cut(s) | 575 |
| DdeI | CTNAG | 2 cut(s) | 353, 625 |
| DpnI | GATC | 6 cut(s) | 179, 235, 303, 396, 417, 649 |
| DpnII | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| Eam1104I | CTCTTC | 1 cut(s) | 131 |
| EarI | CTCTTC | 1 cut(s) | 131 |
| Ecl136II | GAGCTC | 2 cut(s) | 391, 733 |
| Eco130I | CCWWGG | 1 cut(s) | 165 |
| Eco24I | GRGCYC | 3 cut(s) | 173, 393, 735 |
| Eco53kI | GAGCTC | 2 cut(s) | 391, 733 |
| Eco88I | CYCGRG | 3 cut(s) | 157, 172, 197 |
| EcoICRI | GAGCTC | 2 cut(s) | 391, 733 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| EcoT14I | CCWWGG | 1 cut(s) | 165 |
| EcoT38I | GRGCYC | 3 cut(s) | 173, 393, 735 |
| ErhI | CCWWGG | 1 cut(s) | 165 |
| Esp3I | CGTCTC | 1 cut(s) | 602 |
| FaeI | CATG | 1 cut(s) | 470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 91, 123 |
| FatI | CATG | 1 cut(s) | 466 |
| FauI | CCCGC | 1 cut(s) | 239 |
| FblI | GTMKAC | 1 cut(s) | 349 |
| FokI | GGATG | 2 cut(s) | 41, 346 |
| FriOI | GRGCYC | 3 cut(s) | 173, 393, 735 |
| FspBI | CTAG | 2 cut(s) | 419, 590 |
| HaeIII | GGCC | 1 cut(s) | 171 |
| HapII | CCGG | 3 cut(s) | 217, 457, 658 |
| Hin1II | CATG | 1 cut(s) | 470 |
| HinfI | GANTC | 3 cut(s) | 79, 529, 614 |
| HpaII | CCGG | 3 cut(s) | 217, 457, 658 |
| Hpy166II | GTNNAC | 2 cut(s) | 350, 640 |
| Hpy188III | TCNNGA | 5 cut(s) | 197, 227, 237, 299, 305 |
| Hpy8I | GTNNAC | 2 cut(s) | 350, 640 |
| HpyAV | CCTTC | 2 cut(s) | 117, 224 |
| HpyCH4V | TGCA | 4 cut(s) | 463, 525, 696, 739 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 453 |
| HpyF3I | CTNAG | 2 cut(s) | 353, 625 |
| Hsp92II | CATG | 1 cut(s) | 470 |
| Kzo9I | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| LmnI | GCTCC | 1 cut(s) | 738 |
| LpnPI | CCDG | 8 cut(s) | 204, 230, 433, 470, 511, 538, 671, 749 |
| LweI | GCATC | 2 cut(s) | 19, 748 |
| MaeI | CTAG | 2 cut(s) | 419, 590 |
| MalI | GATC | 6 cut(s) | 179, 235, 303, 396, 417, 649 |
| MboI | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| MboII | GAAGA | 4 cut(s) | 118, 137, 440, 734 |
| MflI | RGATCY | 2 cut(s) | 177, 415 |
| MhlI | GDGCHC | 4 cut(s) | 173, 204, 393, 735 |
| MluCI | AATT | 6 cut(s) | 312, 363, 367, 398, 492, 500 |
| MlyI | GAGTC | 1 cut(s) | 523 |
| MmeI | TCCRAC | 1 cut(s) | 6 |
| MnlI | CCTC | 8 cut(s) | 10, 40, 168, 217, 281, 301, 536, 549 |
| MroXI | GAANNNNTTC | 1 cut(s) | 106 |
| MseI | TTAA | 6 cut(s) | 93, 366, 377, 401, 485, 498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspI | CCGG | 3 cut(s) | 217, 457, 658 |
| MspR9I | CCNGG | 2 cut(s) | 458, 659 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 453 |
| NciI | CCSGG | 2 cut(s) | 458, 659 |
| NdeII | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| NlaIII | CATG | 1 cut(s) | 470 |
| NlaIV | GGNNCC | 3 cut(s) | 163, 171, 179 |
| NspV | TTCGAA | 1 cut(s) | 129 |
| PaeR7I | CTCGAG | 1 cut(s) | 197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 106 |
| PfeI | GAWTC | 2 cut(s) | 79, 614 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| PshBI | ATTAAT | 2 cut(s) | 366, 377 |
| PsiI | TTATAA | 1 cut(s) | 690 |
| Psp124BI | GAGCTC | 2 cut(s) | 393, 735 |
| PspN4I | GGNNCC | 3 cut(s) | 163, 171, 179 |
| PspOMI | GGGCCC | 1 cut(s) | 169 |
| PspPI | GGNCC | 2 cut(s) | 169, 170 |
| PsuI | RGATCY | 2 cut(s) | 177, 415 |
| RsaI | GTAC | 1 cut(s) | 576 |
| RsaNI | GTAC | 1 cut(s) | 575 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SacI | GAGCTC | 2 cut(s) | 393, 735 |
| SaqAI | TTAA | 6 cut(s) | 93, 366, 377, 401, 485, 498 |
| Sau3AI | GATC | 6 cut(s) | 177, 233, 301, 394, 415, 647 |
| Sau96I | GGNCC | 2 cut(s) | 169, 170 |
| SchI | GAGTC | 1 cut(s) | 523 |
| ScrFI | CCNGG | 2 cut(s) | 458, 659 |
| SduI | GDGCHC | 4 cut(s) | 173, 204, 393, 735 |
| SfaNI | GCATC | 2 cut(s) | 19, 748 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| Sfr274I | CTCGAG | 1 cut(s) | 197 |
| SfuI | TTCGAA | 1 cut(s) | 129 |
| SlaI | CTCGAG | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| SmlI | CTYRAG | 1 cut(s) | 197 |
| SmoI | CTYRAG | 1 cut(s) | 197 |
| Sse9I | AATT | 6 cut(s) | 312, 363, 367, 398, 492, 500 |
| SsiI | CCGC | 2 cut(s) | 246, 267 |
| SspMI | CTAG | 2 cut(s) | 419, 590 |
| SstI | GAGCTC | 2 cut(s) | 393, 735 |
| StyD4I | CCNGG | 2 cut(s) | 456, 657 |
| StyI | CCWWGG | 1 cut(s) | 165 |
| TaqI | TCGA | 5 cut(s) | 129, 198, 236, 304, 393 |
| TasI | AATT | 6 cut(s) | 312, 363, 367, 398, 492, 500 |
| TfiI | GAWTC | 2 cut(s) | 79, 614 |
| Tru1I | TTAA | 6 cut(s) | 93, 366, 377, 401, 485, 498 |
| Tru9I | TTAA | 6 cut(s) | 93, 366, 377, 401, 485, 498 |
| TspDTI | ATGAA | 2 cut(s) | 79, 551 |
| TspGWI | ACGGA | 1 cut(s) | 626 |
| VspI | ATTAAT | 2 cut(s) | 366, 377 |
| XapI | RAATTY | 1 cut(s) | 500 |
| XhoI | CTCGAG | 1 cut(s) | 197 |
| XmiI | GTMKAC | 1 cut(s) | 349 |
| XmnI | GAANNNNTTC | 1 cut(s) | 106 |
| XspI | CTAG | 2 cut(s) | 419, 590 |