Rmu_sc0007131.1_g000013

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007131.1
OG0000080
Physical Location & Seq
Forward (+)
43602 .. 44414
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007131.1_g000013.1.cds

Sequence Viewer

Length: 813 bp
atggtccaagccagtctggttaactcttcattttggaaagatgtgaggattcttcgtttgcggcaaaatatgagatctatcaatgatccagagttctcagagtttttacttaatgttggtaatggagaacaaccatctgtggttgaagacatgatacgattaccgtcgtgtatggccataccatgggaggatgaagagtcaatcaaccgattagttaatgaagtttttcctaatttggaatctcatgtaaatgatgcagcgtacatggttgaaagggcaataatcactccaaagaatgatgatgttgacgtgcttaatgagatgattataaagcaatttccagggcctgaacggatcatgtactctttcgactcagttgaggatgacactagaaatatgtatcaacaagaattcttaaattcaatttcaccttctggtatgcccccacatcagttaactataaaaaaaggtgctcccattatgcttttgagaaatattgaccctacgatgggattgtgcaatggtacacgattgacttgccgtggatcatataacaaccttattgacgcagagattttaactggtcaatttgttggaactagagtattcttaccaagaatatctctaaagagtgccgagagttctggactcccttttgagatgacaagaaaacaattccctgtaaagttgagttttgcacttactataaataaatcacaagggcaaacgataccgaatgttggcatctaccttccagatcatgtattcagtcatgggcagttatatgtcgctttatcacgaggaatttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

270

Amino Acids

30.48

Weight (kDa)

5.32

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 183
AciI CCGC 1 cut(s) 61
AclWI GGATC 3 cut(s) 80, 362, 553
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 3 cut(s) 410, 418, 804
AfaI GTAC 3 cut(s) 263, 362, 526
AfiI CCNNNNNNNGG 4 cut(s) 183, 508, 509, 740
AgsI TTSAA 3 cut(s) 146, 272, 423
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 475
AlwI GGATC 3 cut(s) 80, 362, 553
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 2 cut(s) 174, 344
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 3 cut(s) 410, 418, 804
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 4, 344
AsuHPI GGTGA 1 cut(s) 420
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 142, 502
BceAI ACGGC 1 cut(s) 525
BcgI CGANNNNNNTGC 2 cut(s) 519, 553
BciT130I CCWGG 1 cut(s) 342
BfaI CTAG 2 cut(s) 390, 600
BglII AGATCT 1 cut(s) 74
BisI GCNGC 2 cut(s) 62, 258
BlsI GCNGC 2 cut(s) 63, 259
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 4, 344
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 244, 753
BpiI GAAGAC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 182, 341, 541
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 508, 509, 740
Bse1I ACTGG 2 cut(s) 12, 586
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 182, 341, 541
BseGI GGATG 2 cut(s) 196, 388
BseLI CCNNNNNNNGG 4 cut(s) 183, 508, 509, 740
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 2 cut(s) 111, 387
BseNI ACTGG 2 cut(s) 12, 586
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 2 cut(s) 176, 346
BsiHKAI GWGCWC 1 cut(s) 475
BslI CCNNNNNNNGG 4 cut(s) 183, 508, 509, 740
BsnI GGCC 2 cut(s) 176, 346
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 5 cut(s) 74, 85, 354, 545, 757
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 176, 346
BspCNI CTCAG 2 cut(s) 110, 386
BspPI GGATC 3 cut(s) 80, 362, 553
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 2 cut(s) 12, 586
BssECI CCNNGG 3 cut(s) 182, 341, 541
BssMI GATC 5 cut(s) 74, 85, 354, 545, 757
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 31, 189
BstDEI CTNAG 2 cut(s) 97, 373
BstDSI CCRYGG 2 cut(s) 182, 541
BstF5I GGATG 2 cut(s) 196, 388
BstKTI GATC 5 cut(s) 77, 88, 357, 548, 760
BstMBI GATC 5 cut(s) 74, 85, 354, 545, 757
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 2 cut(s) 176, 346
BtgI CCRYGG 2 cut(s) 182, 541
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 196, 388
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 4, 344
CseI GACGC 1 cut(s) 575
Csp6I GTAC 3 cut(s) 262, 361, 525
CviAII CATG 7 cut(s) 151, 183, 245, 265, 358, 761, 773
CviJI RGCY 3 cut(s) 11, 176, 346
CviKI_1 RGCY 3 cut(s) 11, 176, 346
CviQI GTAC 3 cut(s) 262, 361, 525
DdeI CTNAG 2 cut(s) 97, 373
DpnI GATC 5 cut(s) 76, 87, 356, 547, 759
DpnII GATC 5 cut(s) 74, 85, 354, 545, 757
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 31, 189
EarI CTCTTC 2 cut(s) 31, 189
Eco130I CCWWGG 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 7 cut(s) 154, 186, 248, 268, 361, 764, 776
FatI CATG 7 cut(s) 150, 182, 244, 264, 357, 760, 772
Fnu4HI GCNGC 2 cut(s) 62, 258
FokI GGATG 2 cut(s) 203, 395
Fsp4HI GCNGC 2 cut(s) 62, 258
FspBI CTAG 2 cut(s) 390, 600
GluI GCNGC 2 cut(s) 62, 258
HaeIII GGCC 2 cut(s) 176, 346
HgaI GACGC 1 cut(s) 575
Hin1II CATG 7 cut(s) 154, 186, 248, 268, 361, 764, 776
HincII GTYRAC 3 cut(s) 22, 307, 456
HindII GTYRAC 3 cut(s) 22, 307, 456
HinfI GANTC 5 cut(s) 49, 197, 239, 371, 648
HpaI GTTAAC 2 cut(s) 22, 456
HphI GGTGA 1 cut(s) 420
Hpy166II GTNNAC 4 cut(s) 22, 307, 456, 527
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 4 cut(s) 89, 645, 755, 798
Hpy8I GTNNAC 4 cut(s) 22, 307, 456, 527
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 441, 761
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 257, 519, 698
HpyF3I CTNAG 2 cut(s) 97, 373
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 7 cut(s) 154, 186, 248, 268, 361, 764, 776
KspAI GTTAAC 2 cut(s) 22, 456
Kzo9I GATC 5 cut(s) 74, 85, 354, 545, 757
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 2 cut(s) 244, 753
MaeI CTAG 2 cut(s) 390, 600
MaeII ACGT 1 cut(s) 309
MalI GATC 5 cut(s) 76, 87, 356, 547, 759
MboI GATC 5 cut(s) 74, 85, 354, 545, 757
MboII GAAGA 4 cut(s) 18, 44, 158, 206
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 475
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 8 cut(s) 232, 335, 410, 418, 423, 587, 674, 804
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 3 cut(s) 206, 365, 642
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 4 cut(s) 39, 181, 373, 794
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 176
MseI TTAA 7 cut(s) 21, 111, 216, 315, 416, 455, 578
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 182
NdeII GATC 5 cut(s) 74, 85, 354, 545, 757
NlaIII CATG 7 cut(s) 154, 186, 248, 268, 361, 764, 776
NmeAIII GCCGAG 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 49, 239
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 63, 259
PleI GAGTC 3 cut(s) 205, 365, 642
PpsI GAGTC 3 cut(s) 205, 365, 642
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 2 cut(s) 4, 344
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 3 cut(s) 263, 362, 526
RsaNI GTAC 3 cut(s) 262, 361, 525
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 7 cut(s) 21, 111, 216, 315, 416, 455, 578
SatI GCNGC 2 cut(s) 62, 258
Sau3AI GATC 5 cut(s) 74, 85, 354, 545, 757
Sau96I GGNCC 2 cut(s) 4, 344
SchI GAGTC 3 cut(s) 206, 365, 642
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 475
SetI ASST 5 cut(s) 312, 433, 472, 561, 753
SfaNI GCATC 2 cut(s) 244, 753
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 8 cut(s) 232, 335, 410, 418, 423, 587, 674, 804
SsiI CCGC 1 cut(s) 61
SspI AATATT 1 cut(s) 496
SspMI CTAG 2 cut(s) 390, 600
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 369
TasI AATT 8 cut(s) 232, 335, 410, 418, 423, 587, 674, 804
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 49, 239
Tru1I TTAA 7 cut(s) 21, 111, 216, 315, 416, 455, 578
Tru9I TTAA 7 cut(s) 21, 111, 216, 315, 416, 455, 578
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 4 cut(s) 18, 207, 234, 798
TspGWI ACGGA 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 3 cut(s) 410, 418, 804
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 390, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.