Rmu_sc0001466.1_g000001

Helitron helicase-like domain at N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001466.1
OG0000080
Physical Location & Seq
Forward (+)
1 .. 3149
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001466.1_g000001.1.cds

Sequence Viewer

Length: 1811 bp
gaacaggcacgacacaaatggatcatagagagcgtgcacgtgctagccatcaggaatggagacaatcgatgagttctacacaacatgaagcctatttggcacggcggcgagctcatgctaggggaaaacgactagccgtggaaaatgtaaatgaccatgaacaagaggcgggcccaagtaataggaataggctagctccagtacactccgacaacgacagcataagttcaagagtctcatcctattcccaaaaccatgaccaagatgctacaagggtgcgcttgacccacataagacaattagcccgttcgactacgtctcgactgaacaatgtggttattcagaattctgtgccttacgagatgcctaatgtcacaatgaataatcacgatgaggaccacaataacaacgagcatatggtgaataatcatgaggatcagaacaacaacactgagctagagaataacccacaggatcagcgcaacagcagtgttgacccagtgcggcgtacaaggagagcagtagtaaattacaactgcgctagagattttaatgagggatggggtgtcccattttgtcgattgcctgcactaagaacatgtccatactgcaatgcacggttatttcatcgagagaccttcaatttgtgttgttcgaaaggaaatattgttctgcctctaataccctctccgccagagatgatccagctcttttctgaccaaacagatgtgggtagaaaattcagacaaaatatccgagcctataataatgtgtttgcgttcacttcaatgggtgtgcatgttgatgaatccattaatcttcaaggtcgtggaatttatacttttcgtgcacaaggttctatatatcataagattggtgggcttttaccaagtgaaggggcgagaccacgatatctacaagcttacatatatgacactgagcatgaacttgacaatcgattgtctgaaagtgtagttttagacagggcactggttgaaaagatacaacagatattgaatcactataatccatttgtccatcaatttcgaagcctcggacagcgccaagacttgcccaattgcaggctcatcataagagagcagccttctaatcaacgtcagtattgtgtaccatctgcatcacaagttgctgctattatagtaggagggggcgacatcaatccgaatggaagagatttaattgtccaaacaattagtggaagactctggaatgttaaagactcggtcggatattacgaccccatgcaatgcgcccaggtgatgaaaatcctctacttcgaggcggacggctcttacaacagtaacatcggtcataggacaattctgccatcatcatttgttggaagtccacgtgatatgtaccaacggtaccaagatgtgatggctttggttcaaaagtatggcagaccagatttgtttatcactatgacgtgtaacccgaattgggaagaaattaaaagtgagctactccctggacaaacatcacaagatcgtccagatttagaggtcagggtatttcgttcaaatcttgagcagctaaaagaagacatcatcaccaaaggggtattgggaagagttattgctcatgcttttgtcgttgaatttcagaaacggggcctaccacatgtacacatgctggtcatgttggatgaaaatgataagcttaataaccctgaagattatgaccgcattgttagagcagaaataccagataaagatgaagagcctcaactctatgatctggtgttgaaacatatgattcatggtccatgtggaaccttaaaccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

602

Amino Acids

69.19

Weight (kDa)

6.77

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1388
AccB1I GGYRCC 1 cut(s) 1388
AciI CCGC 6 cut(s) 105, 169, 504, 691, 1303, 1707
AclWI GGATC 4 cut(s) 29, 443, 482, 696
AcsI RAATTY 4 cut(s) 345, 739, 833, 1621
AcuI CTGAAG 1 cut(s) 1715
AcvI CACGTG 2 cut(s) 40, 1372
AfaI GTAC 6 cut(s) 203, 510, 1130, 1381, 1390, 1649
AfiI CCNNNNNNNGG 3 cut(s) 895, 1082, 1464
AflIII ACRYGT 3 cut(s) 598, 1450, 1644
AjiI CACGTC 1 cut(s) 1451
AjnI CCWGG 2 cut(s) 1274, 1491
AloI GAACNNNNNNTCC 2 cut(s) 653, 685
AluBI AGCT 8 cut(s) 112, 196, 456, 708, 922, 1485, 1557, 1683
AluI AGCT 8 cut(s) 112, 196, 456, 708, 922, 1485, 1557, 1683
Alw21I GWGCWC 3 cut(s) 39, 114, 852
Alw26I GTCTC 5 cut(s) 54, 240, 323, 628, 897
Alw44I GTGCAC 2 cut(s) 35, 848
AlwI GGATC 4 cut(s) 29, 443, 482, 696
AoxI GGCC 2 cut(s) 171, 1635
ApaI GGGCCC 1 cut(s) 175
ApaLI GTGCAC 2 cut(s) 35, 848
ApeKI GCWGC 3 cut(s) 1101, 1150, 1554
ApoI RAATTY 4 cut(s) 345, 739, 833, 1621
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AseI ATTAAT 1 cut(s) 815
Asp718I GGTACC 1 cut(s) 1388
AspLEI GCGC 5 cut(s) 281, 482, 541, 1064, 1273
AspS9I GGNCC 5 cut(s) 171, 172, 396, 1635, 1786
AsuHPI GGTGA 3 cut(s) 432, 1290, 1566
AsuII TTCGAA 2 cut(s) 655, 1047
AsuNHI GCTAGC 2 cut(s) 43, 192
AvaII GGWCC 2 cut(s) 396, 1786
BaeGI GKGCMC 4 cut(s) 39, 175, 852, 990
BanI GGYRCC 1 cut(s) 1388
BanII GRGCYC 2 cut(s) 114, 175
BbrPI CACGTG 2 cut(s) 40, 1372
BbsI GAAGAC 2 cut(s) 1227, 1571
Bbv12I GWGCWC 3 cut(s) 39, 114, 852
BbvI GCAGC 3 cut(s) 1113, 1137, 1566
BccI CCATC 6 cut(s) 56, 554, 1046, 1140, 1356, 1395
BceAI ACGGC 3 cut(s) 118, 121, 1323
BciT130I CCWGG 2 cut(s) 1276, 1493
BcoDI GTCTC 5 cut(s) 54, 240, 323, 628, 897
BfaI CTAG 6 cut(s) 44, 119, 133, 193, 457, 542
BfoI RGCGCY 1 cut(s) 1065
BglI GCCNNNNNGGC 1 cut(s) 97
BisI GCNGC 5 cut(s) 106, 505, 1102, 1151, 1555
BlsI GCNGC 5 cut(s) 107, 506, 1103, 1152, 1556
Bme1390I CCNGG 2 cut(s) 1276, 1493
Bme18I GGWCC 2 cut(s) 396, 1786
BmgBI CACGTC 1 cut(s) 1451
BmgT120I GGNCC 5 cut(s) 171, 172, 396, 1635, 1786
BmiI GGNNCC 4 cut(s) 173, 1390, 1636, 1797
BmrFI CCNGG 2 cut(s) 1276, 1493
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 3 cut(s) 255, 353, 1147
BmtI GCTAGC 2 cut(s) 47, 196
BmuI ACTGGG 1 cut(s) 493
BpiI GAAGAC 2 cut(s) 1227, 1571
BpmI CTGGAG 1 cut(s) 182
Bpu14I TTCGAA 2 cut(s) 655, 1047
BpuEI CTTGAG 1 cut(s) 1570
Bsa29I ATCGAT 2 cut(s) 67, 957
BsaAI YACGTR 2 cut(s) 40, 1372
BsaBI GATNNNNATC 1 cut(s) 1285
BsaI GGTCTC 2 cut(s) 628, 897
BsaJI CCNNGG 4 cut(s) 137, 1053, 1274, 1491
Bsc4I CCNNNNNNNGG 3 cut(s) 895, 1082, 1464
Bse1I ACTGG 3 cut(s) 199, 499, 995
Bse3DI GCAATG 2 cut(s) 618, 1273
Bse8I GATNNNNATC 1 cut(s) 1285
BseBI CCWGG 2 cut(s) 1276, 1493
BseCI ATCGAT 2 cut(s) 67, 957
BseDI CCNNGG 4 cut(s) 137, 1053, 1274, 1491
BseGI GGATG 3 cut(s) 238, 565, 1674
BseJI GATNNNNATC 1 cut(s) 1285
BseLI CCNNNNNNNGG 3 cut(s) 895, 1082, 1464
BseMI GCAATG 2 cut(s) 618, 1273
BseMII CTCAG 2 cut(s) 443, 929
BseNI ACTGG 3 cut(s) 199, 499, 995
BseSI GKGCMC 4 cut(s) 39, 175, 852, 990
BseXI GCAGC 3 cut(s) 1113, 1137, 1566
BsgI GTGCAG 1 cut(s) 572
Bsh1285I CGRYCG 1 cut(s) 1247
BshFI GGCC 2 cut(s) 173, 1637
BshNI GGYRCC 1 cut(s) 1388
BshVI ATCGAT 2 cut(s) 67, 957
BsiEI CGRYCG 1 cut(s) 1247
BsiHKAI GWGCWC 3 cut(s) 39, 114, 852
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 3 cut(s) 895, 1082, 1464
BsmAI GTCTC 5 cut(s) 54, 240, 323, 628, 897
BsmBI CGTCTC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 2 cut(s) 173, 1637
Bso31I GGTCTC 2 cut(s) 628, 897
Bsp119I TTCGAA 2 cut(s) 655, 1047
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 5 cut(s) 39, 114, 175, 852, 990
Bsp1407I TGTACA 1 cut(s) 1647
Bsp143I GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
BspACI CCGC 6 cut(s) 105, 169, 504, 691, 1303, 1707
BspANI GGCC 2 cut(s) 173, 1637
BspCNI CTCAG 2 cut(s) 444, 930
BspDI ATCGAT 2 cut(s) 67, 957
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 173, 1390, 1636, 1797
BspOI GCTAGC 2 cut(s) 47, 196
BspPI GGATC 4 cut(s) 29, 443, 482, 696
BspQI GCTCTTC 1 cut(s) 1736
BspT104I TTCGAA 2 cut(s) 655, 1047
BspT107I GGYRCC 1 cut(s) 1388
BspTNI GGTCTC 2 cut(s) 628, 897
BsrDI GCAATG 2 cut(s) 618, 1273
BsrGI TGTACA 1 cut(s) 1647
BsrI ACTGG 3 cut(s) 199, 499, 995
BssECI CCNNGG 4 cut(s) 137, 1053, 1274, 1491
BssMI GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
Bst2UI CCWGG 2 cut(s) 1276, 1493
Bst4CI ACNGT 3 cut(s) 620, 1321, 1388
Bst6I CTCTTC 3 cut(s) 1185, 1587, 1736
BstAUI TGTACA 1 cut(s) 1647
BstBAI YACGTR 2 cut(s) 40, 1372
BstBI TTCGAA 2 cut(s) 655, 1047
BstC8I GCNNGC 7 cut(s) 35, 45, 110, 171, 194, 587, 1084
BstDEI CTNAG 3 cut(s) 452, 592, 938
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 3 cut(s) 238, 565, 1674
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 5 cut(s) 281, 482, 541, 1064, 1273
BstKTI GATC 6 cut(s) 24, 438, 477, 704, 1512, 1761
BstMAI GTCTC 5 cut(s) 54, 240, 323, 628, 897
BstMBI GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
BstMCI CGRYCG 1 cut(s) 1247
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 2 cut(s) 1276, 1493
BstNSI RCATGY 4 cut(s) 602, 802, 1648, 1656
BstSCI CCNGG 2 cut(s) 1274, 1491
BstSLI GKGCMC 4 cut(s) 39, 175, 852, 990
BstV1I GCAGC 3 cut(s) 1113, 1137, 1566
BstV2I GAAGAC 2 cut(s) 1227, 1571
Bsu15I ATCGAT 2 cut(s) 67, 957
BsuRI GGCC 2 cut(s) 173, 1637
BsuTUI ATCGAT 2 cut(s) 67, 957
BtgI CCRYGG 1 cut(s) 137
BtrI CACGTC 1 cut(s) 1451
BtsCI GGATG 3 cut(s) 238, 565, 1674
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 5 cut(s) 449, 495, 506, 935, 988
Cac8I GCNNGC 7 cut(s) 35, 45, 110, 171, 194, 587, 1084
CciI TCATGA 1 cut(s) 429
CfoI GCGC 5 cut(s) 281, 482, 541, 1064, 1273
Cfr13I GGNCC 5 cut(s) 171, 172, 396, 1635, 1786
ClaI ATCGAT 2 cut(s) 67, 957
Csp6I GTAC 6 cut(s) 202, 509, 1129, 1380, 1389, 1648
CviQI GTAC 6 cut(s) 202, 509, 1129, 1380, 1389, 1648
DdeI CTNAG 3 cut(s) 452, 592, 938
DpnI GATC 6 cut(s) 23, 437, 476, 703, 1511, 1760
DpnII GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
Eam1104I CTCTTC 3 cut(s) 1185, 1587, 1736
EarI CTCTTC 3 cut(s) 1185, 1587, 1736
EciI GGCGGA 2 cut(s) 680, 1318
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 2 cut(s) 114, 175
Eco31I GGTCTC 2 cut(s) 628, 897
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 2 cut(s) 396, 1786
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 1715
Eco72I CACGTG 2 cut(s) 40, 1372
EcoICRI GAGCTC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 1635
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 1274, 1491
EcoRV GATATC 1 cut(s) 913
EcoT38I GRGCYC 2 cut(s) 114, 175
Esp3I CGTCTC 1 cut(s) 323
FaqI GGGAC 1 cut(s) 553
FauI CCCGC 1 cut(s) 162
FauNDI CATATG 2 cut(s) 416, 1775
Fnu4HI GCNGC 5 cut(s) 106, 505, 1102, 1151, 1555
FokI GGATG 3 cut(s) 225, 572, 1681
FriOI GRGCYC 2 cut(s) 114, 175
Fsp4HI GCNGC 5 cut(s) 106, 505, 1102, 1151, 1555
FspBI CTAG 6 cut(s) 44, 119, 133, 193, 457, 542
GlaI GCGC 5 cut(s) 280, 481, 540, 1063, 1272
GluI GCNGC 5 cut(s) 106, 505, 1102, 1151, 1555
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 2 cut(s) 173, 1637
HhaI GCGC 5 cut(s) 281, 482, 541, 1064, 1273
Hin6I GCGC 5 cut(s) 279, 480, 539, 1062, 1271
HinP1I GCGC 5 cut(s) 279, 480, 539, 1062, 1271
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HindIII AAGCTT 2 cut(s) 920, 1681
HinfI GANTC 6 cut(s) 233, 808, 1017, 1223, 1240, 1779
HphI GGTGA 3 cut(s) 432, 1290, 1566
Hpy166II GTNNAC 8 cut(s) 37, 204, 495, 782, 850, 1129, 1369, 1650
Hpy188III TCNNGA 9 cut(s) 52, 230, 320, 388, 430, 631, 1227, 1516, 1549
Hpy8I GTNNAC 8 cut(s) 37, 204, 495, 782, 850, 1129, 1369, 1650
HpyAV CCTTC 3 cut(s) 648, 889, 1115
HpyCH4III ACNGT 3 cut(s) 620, 1321, 1388
HpyCH4IV ACGT 5 cut(s) 39, 316, 1116, 1371, 1450
HpyCH4V TGCA 9 cut(s) 37, 589, 611, 616, 798, 850, 1082, 1138, 1266
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 3 cut(s) 452, 592, 938
HpySE526I ACGT 5 cut(s) 39, 316, 1116, 1371, 1450
HspAI GCGC 5 cut(s) 279, 480, 539, 1062, 1271
KpnI GGTACC 1 cut(s) 1392
Kzo9I GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
LguI GCTCTTC 1 cut(s) 1736
LmnI GCTCC 1 cut(s) 201
Lsp1109I GCAGC 3 cut(s) 1113, 1137, 1566
LweI GCATC 3 cut(s) 255, 353, 1147
MaeI CTAG 6 cut(s) 44, 119, 133, 193, 457, 542
MaeII ACGT 5 cut(s) 39, 316, 1116, 1371, 1450
MaeIII GTNAC 3 cut(s) 372, 1321, 1453
MalI GATC 6 cut(s) 23, 437, 476, 703, 1511, 1760
MboI GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
MboII GAAGA 8 cut(s) 811, 1202, 1232, 1480, 1576, 1604, 1708, 1753
MfeI CAATTG 1 cut(s) 1077
MhlI GDGCHC 5 cut(s) 39, 114, 175, 852, 990
MlyI GAGTC 3 cut(s) 242, 1217, 1234
MmeI TCCRAC 4 cut(s) 233, 1227, 1341, 1646
MseI TTAA 7 cut(s) 551, 815, 1198, 1235, 1475, 1685, 1801
MslI CAYNNNNRTG 2 cut(s) 787, 803
MspR9I CCNGG 2 cut(s) 1276, 1493
MunI CAATTG 1 cut(s) 1077
MvaI CCWGG 2 cut(s) 1276, 1493
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeI CATATG 2 cut(s) 416, 1775
NdeII GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
NheI GCTAGC 2 cut(s) 43, 192
NlaIV GGNNCC 4 cut(s) 173, 1390, 1636, 1797
NmuCI GTSAC 1 cut(s) 372
NspI RCATGY 4 cut(s) 602, 802, 1648, 1656
NspV TTCGAA 2 cut(s) 655, 1047
PagI TCATGA 1 cut(s) 429
PciI ACATGT 2 cut(s) 598, 1644
PciSI GCTCTTC 1 cut(s) 1736
PcsI WCGNNNNNNNCGW 2 cut(s) 1253, 1456
PfeI GAWTC 3 cut(s) 808, 1017, 1779
PflFI GACNNNGTC 2 cut(s) 315, 1243
PkrI GCNGC 5 cut(s) 107, 506, 1103, 1152, 1556
PleI GAGTC 3 cut(s) 241, 1217, 1234
PmaCI CACGTG 2 cut(s) 40, 1372
PmlI CACGTG 2 cut(s) 40, 1372
PpsI GAGTC 3 cut(s) 241, 1217, 1234
Ppu21I YACGTR 2 cut(s) 40, 1372
PscI ACATGT 2 cut(s) 598, 1644
PshBI ATTAAT 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 1274, 1491
PspCI CACGTG 2 cut(s) 40, 1372
PspGI CCWGG 2 cut(s) 1274, 1491
PspN4I GGNNCC 4 cut(s) 173, 1390, 1636, 1797
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 5 cut(s) 171, 172, 396, 1635, 1786
PsyI GACNNNGTC 2 cut(s) 315, 1243
RsaI GTAC 6 cut(s) 203, 510, 1130, 1381, 1390, 1649
RsaNI GTAC 6 cut(s) 202, 509, 1129, 1380, 1389, 1648
RseI CAYNNNNRTG 2 cut(s) 787, 803
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 1736
SaqAI TTAA 7 cut(s) 551, 815, 1198, 1235, 1475, 1685, 1801
SatI GCNGC 5 cut(s) 106, 505, 1102, 1151, 1555
Sau3AI GATC 6 cut(s) 21, 435, 474, 701, 1509, 1758
Sau96I GGNCC 5 cut(s) 171, 172, 396, 1635, 1786
SchI GAGTC 3 cut(s) 242, 1217, 1234
ScrFI CCNGG 2 cut(s) 1276, 1493
SduI GDGCHC 5 cut(s) 39, 114, 175, 852, 990
SfaNI GCATC 3 cut(s) 255, 353, 1147
SfuI TTCGAA 2 cut(s) 655, 1047
SinI GGWCC 2 cut(s) 396, 1786
SmiMI CAYNNNNRTG 2 cut(s) 787, 803
SmlI CTYRAG 1 cut(s) 1549
SmoI CTYRAG 1 cut(s) 1549
SsiI CCGC 6 cut(s) 105, 169, 504, 691, 1303, 1707
SspI AATATT 1 cut(s) 666
SspMI CTAG 6 cut(s) 44, 119, 133, 193, 457, 542
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 1274, 1491
TaaI ACNGT 3 cut(s) 620, 1321, 1388
TaiI ACGT 5 cut(s) 42, 319, 1119, 1374, 1453
TaqI TCGA 9 cut(s) 67, 310, 321, 579, 630, 655, 957, 1047, 1298
TaqII GACCGA 2 cut(s) 1233, 1318
TatI WGTACW 2 cut(s) 201, 1647
TauI GCSGC 2 cut(s) 108, 507
TfiI GAWTC 3 cut(s) 808, 1017, 1779
Tru1I TTAA 7 cut(s) 551, 815, 1198, 1235, 1475, 1685, 1801
Tru9I TTAA 7 cut(s) 551, 815, 1198, 1235, 1475, 1685, 1801
TscAI CASTG 5 cut(s) 456, 495, 506, 942, 995
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 3 cut(s) 1101, 1150, 1554
Tsp45I GTSAC 1 cut(s) 372
TspRI CASTG 5 cut(s) 456, 495, 506, 942, 995
Tth111I GACNNNGTC 2 cut(s) 315, 1243
VneI GTGCAC 2 cut(s) 35, 848
VpaK11BI GGWCC 2 cut(s) 396, 1786
VspI ATTAAT 1 cut(s) 815
XapI RAATTY 4 cut(s) 345, 739, 833, 1621
XceI RCATGY 4 cut(s) 602, 802, 1648, 1656
XcmI CCANNNNNNNNNTGG 2 cut(s) 1213, 1584
XspI CTAG 6 cut(s) 44, 119, 133, 193, 457, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.