Belongs to the helicase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helitron_like_N | PF14214 | 387 - 569 | 7.4e-55 | Helitron helicase-like domain at N-terminus |
| PIF1 | PF05970 | 1020 - 1242 | 1.5e-92 | PIF1-like helicase |
| Pif1_2B_dom | PF21530 | 1344 - 1390 | 1.4e-21 | DNA helicase Pif1, 2B domain |
| Herpes_Helicase | PF02689 | 1437 - 1496 | 3.4e-06 | Helicase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 525, 1320, 1484, 2339 |
| AatII | GACGTC | 1 cut(s) | 4291 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 482, 3485 |
| AccI | GTMKAC | 2 cut(s) | 1456, 3084 |
| AccIII | TCCGGA | 1 cut(s) | 3233 |
| AciI | CCGC | 4 cut(s) | 1215, 1691, 1842, 1873 |
| AclI | AACGTT | 1 cut(s) | 3119 |
| AclWI | GGATC | 5 cut(s) | 467, 579, 592, 725, 1787 |
| AcoI | YGGCCR | 3 cut(s) | 1508, 2500, 4268 |
| AcuI | CTGAAG | 4 cut(s) | 443, 1575, 3222, 4047 |
| AcyI | GRCGYC | 2 cut(s) | 2474, 4288 |
| AfaI | GTAC | 9 cut(s) | 46, 65, 260, 621, 1663, 2022, 2517, 3720, 4147 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 482, 653, 2528, 3485 |
| AflIII | ACRYGT | 3 cut(s) | 2512, 2701, 3068 |
| AjnI | CCWGG | 1 cut(s) | 3943 |
| Alw21I | GWGCWC | 1 cut(s) | 2140 |
| Alw26I | GTCTC | 2 cut(s) | 2322, 3803 |
| AlwI | GGATC | 5 cut(s) | 467, 579, 592, 725, 1787 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1745, 2717 |
| Ama87I | CYCGRG | 1 cut(s) | 3909 |
| Aor13HI | TCCGGA | 1 cut(s) | 3233 |
| AoxI | GGCC | 3 cut(s) | 1508, 2500, 4268 |
| ApeKI | GCWGC | 2 cut(s) | 557, 1111 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1031, 1063, 1961, 1993, 2560, 2592 |
| AseI | ATTAAT | 8 cut(s) | 467, 720, 1425, 2064, 2118, 3353, 4154, 4181 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 8, 1885, 3241 |
| AspLEI | GCGC | 1 cut(s) | 338 |
| AspS9I | GGNCC | 3 cut(s) | 590, 1835, 2126 |
| AsuHPI | GGTGA | 7 cut(s) | 317, 668, 965, 1091, 2543, 2933, 3959 |
| AsuII | TTCGAA | 1 cut(s) | 823 |
| AvaI | CYCGRG | 1 cut(s) | 3909 |
| AvaII | GGWCC | 3 cut(s) | 590, 1835, 2126 |
| BalI | TGGCCA | 2 cut(s) | 1510, 4270 |
| BamHI | GGATCC | 1 cut(s) | 584 |
| BanII | GRGCYC | 1 cut(s) | 2140 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3702, 3734 |
| BbsI | GAAGAC | 3 cut(s) | 143, 303, 936 |
| Bbv12I | GWGCWC | 1 cut(s) | 2140 |
| BbvI | GCAGC | 2 cut(s) | 569, 1123 |
| BccI | CCATC | 4 cut(s) | 625, 1079, 2370, 4072 |
| BceAI | ACGGC | 1 cut(s) | 1973 |
| BciT130I | CCWGG | 1 cut(s) | 3945 |
| BclI | TGATCA | 1 cut(s) | 565 |
| BcoDI | GTCTC | 2 cut(s) | 2322, 3803 |
| BfaI | CTAG | 9 cut(s) | 38, 107, 120, 1413, 2829, 3008, 3279, 3422, 4236 |
| BfmI | CTRYAG | 2 cut(s) | 67, 3903 |
| BglII | AGATCT | 1 cut(s) | 3197 |
| BisI | GCNGC | 2 cut(s) | 558, 1112 |
| BlsI | GCNGC | 2 cut(s) | 559, 1113 |
| Bme1390I | CCNGG | 1 cut(s) | 3945 |
| Bme18I | GGWCC | 3 cut(s) | 590, 1835, 2126 |
| BmeT110I | CYCGRG | 1 cut(s) | 3909 |
| BmgT120I | GGNCC | 3 cut(s) | 590, 1835, 2126 |
| BmiI | GGNNCC | 1 cut(s) | 586 |
| BmrFI | CCNGG | 1 cut(s) | 3945 |
| BmsI | GCATC | 6 cut(s) | 1429, 2263, 2723, 2950, 3115, 4262 |
| BpiI | GAAGAC | 3 cut(s) | 143, 303, 936 |
| BpmI | CTGGAG | 1 cut(s) | 1647 |
| Bpu14I | TTCGAA | 1 cut(s) | 823 |
| Bsa29I | ATCGAT | 1 cut(s) | 4177 |
| BsaAI | YACGTR | 2 cut(s) | 685, 3437 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1093, 4063 |
| BsaHI | GRCGYC | 2 cut(s) | 2474, 4288 |
| BsaJI | CCNNGG | 2 cut(s) | 1443, 4336 |
| BsaWI | WCCGGW | 3 cut(s) | 302, 587, 3233 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 482, 653, 2528, 3485 |
| Bse1I | ACTGG | 5 cut(s) | 647, 1351, 1408, 2377, 3160 |
| Bse3DI | GCAATG | 1 cut(s) | 1504 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1093, 4063 |
| BseAI | TCCGGA | 1 cut(s) | 3233 |
| BseBI | CCWGG | 1 cut(s) | 3945 |
| BseCI | ATCGAT | 1 cut(s) | 4177 |
| BseDI | CCNNGG | 2 cut(s) | 1443, 4336 |
| BseGI | GGATG | 5 cut(s) | 1033, 2254, 2381, 2518, 3230 |
| BseJI | GATNNNNATC | 2 cut(s) | 1093, 4063 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 482, 653, 2528, 3485 |
| BseMI | GCAATG | 1 cut(s) | 1504 |
| BseNI | ACTGG | 5 cut(s) | 647, 1351, 1408, 2377, 3160 |
| BseRI | GAGGAG | 1 cut(s) | 2196 |
| BseXI | GCAGC | 2 cut(s) | 569, 1123 |
| BshFI | GGCC | 3 cut(s) | 1510, 2502, 4270 |
| BshVI | ATCGAT | 1 cut(s) | 4177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2140 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3909 |
| BsiSI | CCGG | 3 cut(s) | 303, 588, 3234 |
| BslFI | GGGAC | 2 cut(s) | 1889, 3395 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 482, 653, 2528, 3485 |
| BsmAI | GTCTC | 2 cut(s) | 2322, 3803 |
| BsmFI | GGGAC | 2 cut(s) | 1889, 3395 |
| BsmI | GAATGC | 1 cut(s) | 4098 |
| BsnI | GGCC | 3 cut(s) | 1510, 2502, 4270 |
| BsoBI | CYCGRG | 1 cut(s) | 3909 |
| Bsp119I | TTCGAA | 1 cut(s) | 823 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2140 |
| Bsp13I | TCCGGA | 1 cut(s) | 3233 |
| Bsp1407I | TGTACA | 4 cut(s) | 44, 1661, 2515, 3718 |
| Bsp19I | CCATGG | 1 cut(s) | 1443 |
| BspACI | CCGC | 4 cut(s) | 1215, 1691, 1842, 1873 |
| BspANI | GGCC | 3 cut(s) | 1510, 2502, 4270 |
| BspDI | ATCGAT | 1 cut(s) | 4177 |
| BspEI | TCCGGA | 1 cut(s) | 3233 |
| BspHI | TCATGA | 2 cut(s) | 2209, 2311 |
| BspLI | GGNNCC | 1 cut(s) | 586 |
| BspPI | GGATC | 5 cut(s) | 467, 579, 592, 725, 1787 |
| BspT104I | TTCGAA | 1 cut(s) | 823 |
| BsrDI | GCAATG | 1 cut(s) | 1504 |
| BsrGI | TGTACA | 4 cut(s) | 44, 1661, 2515, 3718 |
| BsrI | ACTGG | 5 cut(s) | 647, 1351, 1408, 2377, 3160 |
| BssECI | CCNNGG | 2 cut(s) | 1443, 4336 |
| BssNI | GRCGYC | 2 cut(s) | 2474, 4288 |
| BssT1I | CCWWGG | 2 cut(s) | 1443, 4336 |
| Bst2UI | CCWGG | 1 cut(s) | 3945 |
| Bst4CI | ACNGT | 9 cut(s) | 20, 44, 49, 63, 68, 226, 283, 3106, 3301 |
| BstACI | GRCGYC | 2 cut(s) | 2474, 4288 |
| BstAUI | TGTACA | 4 cut(s) | 44, 1661, 2515, 3718 |
| BstBAI | YACGTR | 2 cut(s) | 685, 3437 |
| BstBI | TTCGAA | 1 cut(s) | 823 |
| BstC8I | GCNNGC | 3 cut(s) | 1695, 1871, 2354 |
| BstDEI | CTNAG | 2 cut(s) | 1026, 3194 |
| BstDSI | CCRYGG | 1 cut(s) | 1443 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2526 |
| BstF5I | GGATG | 5 cut(s) | 1033, 2254, 2381, 2518, 3230 |
| BstHHI | GCGC | 1 cut(s) | 338 |
| BstMAI | GTCTC | 2 cut(s) | 2322, 3803 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 433 |
| BstNI | CCWGG | 1 cut(s) | 3945 |
| BstNSI | RCATGY | 9 cut(s) | 324, 342, 1697, 1873, 2287, 2412, 2516, 2705, 3072 |
| BstSCI | CCNGG | 1 cut(s) | 3943 |
| BstSFI | CTRYAG | 2 cut(s) | 67, 3903 |
| BstSNI | TACGTA | 1 cut(s) | 685 |
| BstV1I | GCAGC | 2 cut(s) | 569, 1123 |
| BstV2I | GAAGAC | 3 cut(s) | 143, 303, 936 |
| BstX2I | RGATCY | 3 cut(s) | 472, 584, 3197 |
| BstYI | RGATCY | 3 cut(s) | 472, 584, 3197 |
| Bsu15I | ATCGAT | 1 cut(s) | 4177 |
| BsuRI | GGCC | 3 cut(s) | 1510, 2502, 4270 |
| BsuTUI | ATCGAT | 1 cut(s) | 4177 |
| BtgI | CCRYGG | 1 cut(s) | 1443 |
| BtgZI | GCGATG | 1 cut(s) | 4050 |
| BtsCI | GGATG | 5 cut(s) | 1033, 2254, 2381, 2518, 3230 |
| BtsIMutI | CAGTG | 2 cut(s) | 59, 4060 |
| Cac8I | GCNNGC | 3 cut(s) | 1695, 1871, 2354 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1745, 2717 |
| CciI | TCATGA | 2 cut(s) | 2209, 2311 |
| CfoI | GCGC | 1 cut(s) | 338 |
| Cfr13I | GGNCC | 3 cut(s) | 590, 1835, 2126 |
| ClaI | ATCGAT | 1 cut(s) | 4177 |
| CseI | GACGC | 3 cut(s) | 1658, 2482, 2714 |
| CsiI | ACCWGGT | 1 cut(s) | 3943 |
| Csp6I | GTAC | 9 cut(s) | 45, 64, 259, 620, 1662, 2021, 2516, 3719, 4146 |
| CviQI | GTAC | 9 cut(s) | 45, 64, 259, 620, 1662, 2021, 2516, 3719, 4146 |
| DdeI | CTNAG | 2 cut(s) | 1026, 3194 |
| DraI | TTTAAA | 9 cut(s) | 604, 1588, 2110, 2163, 2383, 3030, 4083, 4281, 4440 |
| EaeI | YGGCCR | 3 cut(s) | 1508, 2500, 4268 |
| EciI | GGCGGA | 1 cut(s) | 1230 |
| Ecl136II | GAGCTC | 1 cut(s) | 2138 |
| Eco105I | TACGTA | 1 cut(s) | 685 |
| Eco130I | CCWWGG | 2 cut(s) | 1443, 4336 |
| Eco24I | GRGCYC | 1 cut(s) | 2140 |
| Eco47I | GGWCC | 3 cut(s) | 590, 1835, 2126 |
| Eco53kI | GAGCTC | 1 cut(s) | 2138 |
| Eco57I | CTGAAG | 4 cut(s) | 443, 1575, 3222, 4047 |
| Eco88I | CYCGRG | 1 cut(s) | 3909 |
| EcoICRI | GAGCTC | 1 cut(s) | 2138 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2526 |
| EcoRI | GAATTC | 1 cut(s) | 4049 |
| EcoRII | CCWGG | 1 cut(s) | 3943 |
| EcoT14I | CCWWGG | 2 cut(s) | 1443, 4336 |
| EcoT22I | ATGCAT | 1 cut(s) | 144 |
| EcoT38I | GRGCYC | 1 cut(s) | 2140 |
| ErhI | CCWWGG | 2 cut(s) | 1443, 4336 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 411, 443, 484, 516 |
| FaqI | GGGAC | 2 cut(s) | 1889, 3395 |
| FauI | CCCGC | 1 cut(s) | 1866 |
| FauNDI | CATATG | 3 cut(s) | 1075, 1249, 1701 |
| FbaI | TGATCA | 1 cut(s) | 565 |
| FblI | GTMKAC | 2 cut(s) | 1456, 3084 |
| Fnu4HI | GCNGC | 2 cut(s) | 558, 1112 |
| FokI | GGATG | 5 cut(s) | 1020, 2241, 2388, 2505, 3217 |
| FriOI | GRGCYC | 1 cut(s) | 2140 |
| Fsp4HI | GCNGC | 2 cut(s) | 558, 1112 |
| FspBI | CTAG | 9 cut(s) | 38, 107, 120, 1413, 2829, 3008, 3279, 3422, 4236 |
| GlaI | GCGC | 1 cut(s) | 337 |
| GluI | GCNGC | 2 cut(s) | 558, 1112 |
| GsuI | CTGGAG | 1 cut(s) | 1647 |
| HaeIII | GGCC | 3 cut(s) | 1510, 2502, 4270 |
| HapII | CCGG | 3 cut(s) | 303, 588, 3234 |
| HgaI | GACGC | 3 cut(s) | 1658, 2482, 2714 |
| HhaI | GCGC | 1 cut(s) | 338 |
| Hin1I | GRCGYC | 2 cut(s) | 2474, 4288 |
| Hin6I | GCGC | 1 cut(s) | 336 |
| HinP1I | GCGC | 1 cut(s) | 336 |
| HincII | GTYRAC | 4 cut(s) | 890, 1243, 2729, 3038 |
| HindII | GTYRAC | 4 cut(s) | 890, 1243, 2729, 3038 |
| HindIII | AAGCTT | 4 cut(s) | 252, 425, 1338, 3567 |
| HpaII | CCGG | 3 cut(s) | 303, 588, 3234 |
| HphI | GGTGA | 7 cut(s) | 317, 668, 965, 1091, 2543, 2933, 3959 |
| Hpy99I | CGWCG | 1 cut(s) | 2666 |
| HpyAV | CCTTC | 4 cut(s) | 767, 870, 3197, 3704 |
| HpyCH4III | ACNGT | 9 cut(s) | 20, 44, 49, 63, 68, 226, 283, 3106, 3301 |
| HpyCH4IV | ACGT | 8 cut(s) | 684, 1186, 1194, 1540, 3034, 3119, 3436, 4288 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 433 |
| HpyF3I | CTNAG | 2 cut(s) | 1026, 3194 |
| HpySE526I | ACGT | 8 cut(s) | 684, 1186, 1194, 1540, 3034, 3119, 3436, 4288 |
| Hsp92I | GRCGYC | 2 cut(s) | 2474, 4288 |
| HspAI | GCGC | 1 cut(s) | 336 |
| Kpn2I | TCCGGA | 1 cut(s) | 3233 |
| Ksp22I | TGATCA | 1 cut(s) | 565 |
| LmnI | GCTCC | 3 cut(s) | 554, 964, 3394 |
| Lsp1109I | GCAGC | 2 cut(s) | 569, 1123 |
| LweI | GCATC | 6 cut(s) | 1429, 2263, 2723, 2950, 3115, 4262 |
| MabI | ACCWGGT | 1 cut(s) | 3943 |
| MaeI | CTAG | 9 cut(s) | 38, 107, 120, 1413, 2829, 3008, 3279, 3422, 4236 |
| MaeII | ACGT | 8 cut(s) | 684, 1186, 1194, 1540, 3034, 3119, 3436, 4288 |
| MaeIII | GTNAC | 5 cut(s) | 49, 953, 2737, 3437, 4420 |
| MfeI | CAATTG | 5 cut(s) | 561, 1257, 3016, 3726, 3804 |
| MflI | RGATCY | 3 cut(s) | 472, 584, 3197 |
| MhlI | GDGCHC | 1 cut(s) | 2140 |
| MlsI | TGGCCA | 2 cut(s) | 1510, 4270 |
| MluNI | TGGCCA | 2 cut(s) | 1510, 4270 |
| MlyI | GAGTC | 3 cut(s) | 293, 1238, 2324 |
| MmeI | TCCRAC | 2 cut(s) | 1970, 2450 |
| MnlI | CCTC | 9 cut(s) | 269, 646, 1676, 1953, 2217, 3143, 3303, 3536, 3624 |
| Mox20I | TGGCCA | 2 cut(s) | 1510, 4270 |
| Mph1103I | ATGCAT | 1 cut(s) | 144 |
| MroI | TCCGGA | 1 cut(s) | 3233 |
| MroXI | GAANNNNTTC | 3 cut(s) | 8, 1885, 3241 |
| MscI | TGGCCA | 2 cut(s) | 1510, 4270 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2064, 3144, 3456 |
| Msp20I | TGGCCA | 2 cut(s) | 1510, 4270 |
| MspI | CCGG | 3 cut(s) | 303, 588, 3234 |
| MspR9I | CCNGG | 1 cut(s) | 3945 |
| MunI | CAATTG | 5 cut(s) | 561, 1257, 3016, 3726, 3804 |
| Mva1269I | GAATGC | 1 cut(s) | 4098 |
| MvaI | CCWGG | 1 cut(s) | 3945 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 433 |
| NcoI | CCATGG | 1 cut(s) | 1443 |
| NdeI | CATATG | 3 cut(s) | 1075, 1249, 1701 |
| NlaIV | GGNNCC | 1 cut(s) | 586 |
| NmeAIII | GCCGAG | 1 cut(s) | 2230 |
| NmuCI | GTSAC | 2 cut(s) | 953, 3437 |
| NsiI | ATGCAT | 1 cut(s) | 144 |
| NspI | RCATGY | 9 cut(s) | 324, 342, 1697, 1873, 2287, 2412, 2516, 2705, 3072 |
| NspV | TTCGAA | 1 cut(s) | 823 |
| PacI | TTAATTAA | 1 cut(s) | 2097 |
| PaeI | GCATGC | 2 cut(s) | 1697, 1873 |
| PaeR7I | CTCGAG | 1 cut(s) | 3909 |
| PagI | TCATGA | 2 cut(s) | 2209, 2311 |
| PciI | ACATGT | 3 cut(s) | 2512, 2701, 3068 |
| PctI | GAATGC | 1 cut(s) | 4098 |
| PdmI | GAANNNNTTC | 3 cut(s) | 8, 1885, 3241 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 482, 3485 |
| PkrI | GCNGC | 2 cut(s) | 559, 1113 |
| PleI | GAGTC | 3 cut(s) | 293, 1238, 2323 |
| PpsI | GAGTC | 3 cut(s) | 293, 1238, 2323 |
| Ppu21I | YACGTR | 2 cut(s) | 685, 3437 |
| PscI | ACATGT | 3 cut(s) | 2512, 2701, 3068 |
| PshBI | ATTAAT | 8 cut(s) | 467, 720, 1425, 2064, 2118, 3353, 4154, 4181 |
| PsiI | TTATAA | 4 cut(s) | 525, 1320, 1484, 2339 |
| Psp124BI | GAGCTC | 1 cut(s) | 2140 |
| Psp1406I | AACGTT | 1 cut(s) | 3119 |
| Psp6I | CCWGG | 1 cut(s) | 3943 |
| PspGI | CCWGG | 1 cut(s) | 3943 |
| PspN4I | GGNNCC | 1 cut(s) | 586 |
| PspPI | GGNCC | 3 cut(s) | 590, 1835, 2126 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1745, 2717 |
| PsuI | RGATCY | 3 cut(s) | 472, 584, 3197 |
| RsaI | GTAC | 9 cut(s) | 46, 65, 260, 621, 1663, 2022, 2517, 3720, 4147 |
| RsaNI | GTAC | 9 cut(s) | 45, 64, 259, 620, 1662, 2021, 2516, 3719, 4146 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2064, 3144, 3456 |
| SacI | GAGCTC | 1 cut(s) | 2140 |
| SatI | GCNGC | 2 cut(s) | 558, 1112 |
| Sau96I | GGNCC | 3 cut(s) | 590, 1835, 2126 |
| SchI | GAGTC | 3 cut(s) | 293, 1238, 2324 |
| ScrFI | CCNGG | 1 cut(s) | 3945 |
| SduI | GDGCHC | 1 cut(s) | 2140 |
| SexAI | ACCWGGT | 1 cut(s) | 3943 |
| SfaNI | GCATC | 6 cut(s) | 1429, 2263, 2723, 2950, 3115, 4262 |
| SfcI | CTRYAG | 2 cut(s) | 67, 3903 |
| Sfr274I | CTCGAG | 1 cut(s) | 3909 |
| SfuI | TTCGAA | 1 cut(s) | 823 |
| SinI | GGWCC | 3 cut(s) | 590, 1835, 2126 |
| SlaI | CTCGAG | 1 cut(s) | 3909 |
| SmiI | ATTTAAAT | 2 cut(s) | 2110, 2163 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2064, 3144, 3456 |
| SmlI | CTYRAG | 1 cut(s) | 3909 |
| SmoI | CTYRAG | 1 cut(s) | 3909 |
| SnaBI | TACGTA | 1 cut(s) | 685 |
| SphI | GCATGC | 2 cut(s) | 1697, 1873 |
| SsiI | CCGC | 4 cut(s) | 1215, 1691, 1842, 1873 |
| SspMI | CTAG | 9 cut(s) | 38, 107, 120, 1413, 2829, 3008, 3279, 3422, 4236 |
| SstI | GAGCTC | 1 cut(s) | 2140 |
| StyD4I | CCNGG | 1 cut(s) | 3943 |
| StyI | CCWWGG | 2 cut(s) | 1443, 4336 |
| SwaI | ATTTAAAT | 2 cut(s) | 2110, 2163 |
| TaaI | ACNGT | 9 cut(s) | 20, 44, 49, 63, 68, 226, 283, 3106, 3301 |
| TaiI | ACGT | 8 cut(s) | 687, 1189, 1197, 1543, 3037, 3122, 3439, 4291 |
| TaqI | TCGA | 8 cut(s) | 729, 823, 2134, 2140, 3123, 3677, 3910, 4177 |
| TatI | WGTACW | 6 cut(s) | 44, 63, 619, 1661, 2515, 3718 |
| TscAI | CASTG | 2 cut(s) | 66, 4060 |
| TseFI | GTSAC | 2 cut(s) | 953, 3437 |
| TseI | GCWGC | 2 cut(s) | 557, 1111 |
| Tsp45I | GTSAC | 2 cut(s) | 953, 3437 |
| TspGWI | ACGGA | 3 cut(s) | 597, 1020, 1893 |
| TspRI | CASTG | 2 cut(s) | 66, 4060 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 482, 3485 |
| VpaK11BI | GGWCC | 3 cut(s) | 590, 1835, 2126 |
| VspI | ATTAAT | 8 cut(s) | 467, 720, 1425, 2064, 2118, 3353, 4154, 4181 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2526 |
| XbaI | TCTAGA | 1 cut(s) | 3278 |
| XceI | RCATGY | 9 cut(s) | 324, 342, 1697, 1873, 2287, 2412, 2516, 2705, 3072 |
| XhoI | CTCGAG | 1 cut(s) | 3909 |
| XmiI | GTMKAC | 2 cut(s) | 1456, 3084 |
| XmnI | GAANNNNTTC | 3 cut(s) | 8, 1885, 3241 |
| XspI | CTAG | 9 cut(s) | 38, 107, 120, 1413, 2829, 3008, 3279, 3422, 4236 |
| ZraI | GACGTC | 1 cut(s) | 4289 |
| Zsp2I | ATGCAT | 1 cut(s) | 144 |