FvH4_7g14272

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000080
Physical Location & Seq
Forward (+)
12641899 .. 12643800
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14272.t1

Sequence Viewer

Length: 1566 bp
ATGCTAGAACAATTTGATAAGAGCATTAGAGACTTTGATCTACCAGAAATGACAGCTGAGCAAGAAGATGGTCTACGAGTGCCGAGCTGTATTGAAGATGAACATTCTATTAATGTCCCTCAAGAAGATATTGATGCAATTGGTCGACTCAACAATGACCAAATGATGGCATTTAACACCATACTGGATGCGGTCGTGAGAAGAGAAAGTGCATTATTTTTTGTTGATGGTCCTGGAGGAACTGGGAAGACGTACCTATACTGTGCATTGTTGGCAAAGTTAAGAAGCATGAATCATATAGTCCTGGCAACTGCATCATCCGGAATAGCAGCAACTATCTTGCCCGGCGGGAGAACAACTCACTCTAGATTCAAGATCCCACTTGATGTAAAAGATCCGACATCCATGTGTTCCATAGAAAAACAGTCTCCACTGGCACAATTGGTACGAGATTCCACTGCAATCATCTGGGATGAGGCACCTATGACAAATAGACACGCCTTTGAAGCACTTGATAGAATTTTCTGTGACATAATGGGCGTAGAAATTCCATTCGGTGGAAAAATAATGATTTTTGGGGGAGATTTTCGTCAAGTCCTTCCTGTTGTTCCTAAAGGAACAAGGTCTCAACTGATTGAAGCCTCTATTGTGAAATCAGCATTTTGGGCACAAGTAAGGATATTGAGATTGAGACAAAATATGAGATCCATAAATGACCCCCAATTTGCAGAGTTTCTACTTCGTGTTGGTGATGGGAGTGAACATGTCATCGATGACGAAATGATAAGATTACCGGAATGCATGGTGATTCCTTGGGAAAGCGAACAATCTATCAACAAAATAATTGATGATGTTTTCCCCAATTTATCAAATCATGTCAACGATGCAAGATACATGGTGGACAGAGCATTGATTACTCCTCTAAATGATGATGTGGACATGTTAAATGAGAAGATTATCAGAATGTTTCCAGGTGAAGAAATTACAATATACTCATTTGACTCTGTGGAAGATGACACAAGAAATTTGTACCAACCAGAGTTTTTGAACTCGATCAACGCCGGTGGGTTGCCGCCCCATAAATTAACTTTGAAAACAGGTGCTCCAATCATGCTTCTAAGAAATATTGACCCAAAATTGGGATTATGTAACGGCACAAGATTGTTGTGTCGCGGTTCCTACCAAAACCTGATAGATGCTGAGATACTAACCGGACAATTTGCTGGGACTCGAGTTTTTCTACCTAGGATTCCTTTGAAAAGTCAAGAAACTGCTGCGCTACCGTTTCAACTAACAAGAAAACAATTTCCACTCAAACTGAGTTTCTCTTTGACCATAAACAAATCTCAAGGTCAGACGATCCCACAAGTAGGTGTTTACCTCCCAGATCATGTTTTTAGTCATGGACAATTGTATGTGGCGTTGTCTAGAGGAGTATCGAAGTCAACCACAAAGATTATGGTTAAAAAAGGCTCCGATGTTGGTGAAGAAGGCGTGTTTACTAAGAACGTCATATTTAAAGAAGTTTTGCTTCATTCGAACGCAAATGATATGTCGTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

522

Amino Acids

58.17

Weight (kDa)

5.51

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIF1 PF05970 50 - 255 4.4e-74 PIF1-like helicase
Pif1_2B_dom PF21530 347 - 389 4.5e-21 DNA helicase Pif1, 2B domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccB7I CCANNNNNTGG 2 cut(s) 166, 557
AccI GTMKAC 2 cut(s) 73, 145
AccII CGCG 1 cut(s) 1173
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 4 cut(s) 191, 348, 1073, 1173
AclWI GGATC 4 cut(s) 370, 389, 699, 1354
AcsI RAATTY 3 cut(s) 519, 546, 1024
AfaI GTAC 3 cut(s) 254, 447, 1031
AfiI CCNNNNNNNGG 5 cut(s) 166, 557, 1138, 1139, 1370
AflIII ACRYGT 2 cut(s) 763, 939
AgsI TTSAA 8 cut(s) 95, 373, 506, 638, 1048, 1093, 1258, 1289
AjnI CCWGG 3 cut(s) 232, 303, 970
AluBI AGCT 2 cut(s) 56, 87
AluI AGCT 2 cut(s) 56, 87
Alw21I GWGCWC 1 cut(s) 1105
Alw26I GTCTC 4 cut(s) 24, 432, 630, 685
AlwI GGATC 4 cut(s) 370, 389, 699, 1354
Ama87I CYCGRG 1 cut(s) 1230
Aor13HI TCCGGA 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 329, 1274
ApoI RAATTY 3 cut(s) 519, 546, 1024
ArsI GACNNNNNNTTYG 3 cut(s) 707, 739, 1538
AseI ATTAAT 1 cut(s) 111
AspA2I CCTAGG 1 cut(s) 1244
AspLEI GCGC 1 cut(s) 1279
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 761, 817, 986, 1496
AsuII TTCGAA 1 cut(s) 1538
AvaI CYCGRG 1 cut(s) 1230
AvaII GGWCC 1 cut(s) 230
AvrII CCTAGG 1 cut(s) 1244
BaeGI GKGCMC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 478
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 2 cut(s) 254, 1551
Bbv12I GWGCWC 1 cut(s) 1105
BbvI GCAGC 2 cut(s) 341, 1261
BccI CCATC 4 cut(s) 62, 160, 221, 746
BceAI ACGGC 1 cut(s) 1168
BciT130I CCWGG 3 cut(s) 234, 305, 972
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 4 cut(s) 24, 432, 630, 685
BfaI CTAG 4 cut(s) 5, 366, 1245, 1428
BisI GCNGC 3 cut(s) 330, 1073, 1275
BlnI CCTAGG 1 cut(s) 1244
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 3 cut(s) 331, 1074, 1276
Bme1390I CCNGG 4 cut(s) 234, 305, 345, 972
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 1230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 3 cut(s) 480, 1177, 1474
BmrFI CCNGG 4 cut(s) 234, 305, 345, 972
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 5 cut(s) 124, 178, 323, 874, 1186
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 254, 1551
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 1538
BpuEI CTTGAG 2 cut(s) 105, 1332
BpuMI CCSGG 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 771
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 812, 1244
BsaWI WCCGGW 3 cut(s) 320, 793, 1211
BsaXI ACNNNNNCTCC 2 cut(s) 1087, 1117
Bsc4I CCNNNNNNNGG 5 cut(s) 166, 557, 1138, 1139, 1370
Bse118I RCCGGY 1 cut(s) 1061
Bse1I ACTGG 3 cut(s) 189, 247, 438
BseAI TCCGGA 1 cut(s) 320
BseBI CCWGG 3 cut(s) 234, 305, 972
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 2 cut(s) 812, 1244
BseGI GGATG 4 cut(s) 193, 317, 401, 478
BseLI CCNNNNNNNGG 5 cut(s) 166, 557, 1138, 1139, 1370
BseMII CTCAG 3 cut(s) 48, 1191, 1310
BseNI ACTGG 3 cut(s) 189, 247, 438
BseRI GAGGAG 2 cut(s) 909, 1446
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 2 cut(s) 341, 1261
BseYI CCCAGC 1 cut(s) 1223
Bsh1236I CGCG 1 cut(s) 1173
Bsh1285I CGRYCG 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 771
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 1105
BsiHKCI CYCGRG 1 cut(s) 1230
BsiSI CCGG 5 cut(s) 321, 345, 794, 1062, 1212
BslFI GGGAC 2 cut(s) 101, 1240
BslI CCNNNNNNNGG 5 cut(s) 166, 557, 1138, 1139, 1370
BsmAI GTCTC 4 cut(s) 24, 432, 630, 685
BsmFI GGGAC 2 cut(s) 101, 1240
BsmI GAATGC 1 cut(s) 803
Bso31I GGTCTC 1 cut(s) 630
BsoBI CYCGRG 1 cut(s) 1230
Bsp119I TTCGAA 1 cut(s) 1538
Bsp1286I GDGCHC 2 cut(s) 670, 1105
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 4 cut(s) 191, 348, 1073, 1173
BspCNI CTCAG 3 cut(s) 49, 1192, 1311
BspDI ATCGAT 1 cut(s) 771
BspEI TCCGGA 1 cut(s) 320
BspFNI CGCG 1 cut(s) 1173
BspLI GGNNCC 3 cut(s) 480, 1177, 1474
BspPI GGATC 4 cut(s) 370, 389, 699, 1354
BspT104I TTCGAA 1 cut(s) 1538
BspT107I GGYRCC 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 630
BsrFI RCCGGY 1 cut(s) 1061
BsrI ACTGG 3 cut(s) 189, 247, 438
BssAI RCCGGY 1 cut(s) 1061
BssECI CCNNGG 2 cut(s) 812, 1244
BssMI GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
BssT1I CCWWGG 2 cut(s) 812, 1244
Bst2UI CCWGG 3 cut(s) 234, 305, 972
Bst4CI ACNGT 3 cut(s) 263, 426, 1284
Bst6I CTCTTC 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 1538
BstDEI CTNAG 5 cut(s) 57, 1118, 1200, 1319, 1503
BstF5I GGATG 4 cut(s) 193, 317, 401, 478
BstFNI CGCG 1 cut(s) 1173
BstHHI GCGC 1 cut(s) 1279
BstKTI GATC 7 cut(s) 40, 378, 397, 707, 1056, 1362, 1390
BstMAI GTCTC 4 cut(s) 24, 432, 630, 685
BstMBI GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 3 cut(s) 272, 506, 665
BstNI CCWGG 3 cut(s) 234, 305, 972
BstNSI RCATGY 2 cut(s) 767, 943
BstSCI CCNGG 4 cut(s) 232, 303, 343, 970
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 1173
BstV1I GCAGC 2 cut(s) 341, 1261
BstV2I GAAGAC 2 cut(s) 254, 1551
BstX2I RGATCY 3 cut(s) 375, 394, 704
BstYI RGATCY 3 cut(s) 375, 394, 704
Bsu15I ATCGAT 1 cut(s) 771
BsuTUI ATCGAT 1 cut(s) 771
BtsCI GGATG 4 cut(s) 193, 317, 401, 478
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 2 cut(s) 431, 456
CfoI GCGC 1 cut(s) 1279
Cfr10I RCCGGY 1 cut(s) 1061
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 771
Csp6I GTAC 3 cut(s) 253, 446, 1030
CspCI CAANNNNNGTGG 2 cut(s) 1045, 1080
CviJI RGCY 4 cut(s) 56, 87, 641, 1473
CviKI_1 RGCY 4 cut(s) 56, 87, 641, 1473
CviQI GTAC 3 cut(s) 253, 446, 1030
DdeI CTNAG 5 cut(s) 57, 1118, 1200, 1319, 1503
DpnI GATC 7 cut(s) 39, 377, 396, 706, 1055, 1361, 1389
DpnII GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
DraI TTTAAA 1 cut(s) 1519
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 812, 1244
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 1230
EcoRII CCWGG 3 cut(s) 232, 303, 970
EcoT14I CCWWGG 2 cut(s) 812, 1244
EcoT22I ATGCAT 1 cut(s) 803
ErhI CCWWGG 2 cut(s) 812, 1244
FalI AAGNNNNNCTT 2 cut(s) 1515, 1547
FaqI GGGAC 2 cut(s) 101, 1240
FauI CCCGC 1 cut(s) 341
FblI GTMKAC 2 cut(s) 73, 145
Fnu4HI GCNGC 3 cut(s) 330, 1073, 1275
FokI GGATG 4 cut(s) 200, 304, 388, 485
Fsp4HI GCNGC 3 cut(s) 330, 1073, 1275
FspBI CTAG 4 cut(s) 5, 366, 1245, 1428
GlaI GCGC 1 cut(s) 1278
GluI GCNGC 3 cut(s) 330, 1073, 1275
GsaI CCCAGC 1 cut(s) 1227
GsuI CTGGAG 1 cut(s) 255
HapII CCGG 5 cut(s) 321, 345, 794, 1062, 1212
HhaI GCGC 1 cut(s) 1279
Hin6I GCGC 1 cut(s) 1277
HinP1I GCGC 1 cut(s) 1277
HincII GTYRAC 3 cut(s) 146, 880, 1446
HindII GTYRAC 3 cut(s) 146, 880, 1446
HinfI GANTC 8 cut(s) 147, 292, 369, 452, 808, 1001, 1228, 1249
HpaII CCGG 5 cut(s) 321, 345, 794, 1062, 1212
HphI GGTGA 4 cut(s) 761, 817, 986, 1496
Hpy166II GTNNAC 9 cut(s) 74, 146, 761, 880, 901, 937, 1378, 1446, 1500
Hpy188I TCNGA 4 cut(s) 399, 962, 1356, 1477
Hpy188III TCNNGA 7 cut(s) 122, 196, 321, 366, 373, 1265, 1428
Hpy8I GTNNAC 9 cut(s) 74, 146, 761, 880, 901, 937, 1378, 1446, 1500
HpyAV CCTTC 2 cut(s) 608, 1484
HpyCH4III ACNGT 3 cut(s) 263, 426, 1284
HpyCH4IV ACGT 2 cut(s) 251, 1509
HpyCH4V TGCA 8 cut(s) 137, 212, 266, 314, 461, 728, 801, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 506, 665
HpyF3I CTNAG 5 cut(s) 57, 1118, 1200, 1319, 1503
HpySE526I ACGT 2 cut(s) 251, 1509
HspAI GCGC 1 cut(s) 1277
Kpn2I TCCGGA 1 cut(s) 320
Kzo9I GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
LmnI GCTCC 2 cut(s) 1108, 1478
Lsp1109I GCAGC 2 cut(s) 341, 1261
LweI GCATC 5 cut(s) 124, 178, 323, 874, 1186
MaeI CTAG 4 cut(s) 5, 366, 1245, 1428
MaeII ACGT 2 cut(s) 251, 1509
MaeIII GTNAC 2 cut(s) 527, 1148
MalI GATC 7 cut(s) 39, 377, 396, 706, 1055, 1361, 1389
MboI GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
MfeI CAATTG 3 cut(s) 138, 440, 1409
MflI RGATCY 3 cut(s) 375, 394, 704
MhlI GDGCHC 2 cut(s) 670, 1105
MlyI GAGTC 3 cut(s) 141, 995, 1222
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 7 cut(s) 129, 230, 469, 652, 930, 1391, 1424
Mph1103I ATGCAT 1 cut(s) 803
MroI TCCGGA 1 cut(s) 320
MseI TTAA 7 cut(s) 111, 174, 281, 944, 1085, 1464, 1518
MslI CAYNNNNRTG 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 5 cut(s) 321, 345, 794, 1062, 1212
MspR9I CCNGG 4 cut(s) 234, 305, 345, 972
MunI CAATTG 3 cut(s) 138, 440, 1409
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 3 cut(s) 234, 305, 972
MvnI CGCG 1 cut(s) 1173
MwoI GCNNNNNNNGC 3 cut(s) 272, 506, 665
NciI CCSGG 1 cut(s) 345
NdeII GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
NlaIV GGNNCC 3 cut(s) 480, 1177, 1474
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 803
NspI RCATGY 2 cut(s) 767, 943
NspV TTCGAA 1 cut(s) 1538
PaeR7I CTCGAG 1 cut(s) 1230
PciI ACATGT 2 cut(s) 763, 939
PctI GAATGC 1 cut(s) 803
PfeI GAWTC 5 cut(s) 292, 369, 452, 808, 1249
PflMI CCANNNNNTGG 2 cut(s) 166, 557
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 331, 1074, 1276
PleI GAGTC 3 cut(s) 141, 995, 1222
PpsI GAGTC 3 cut(s) 141, 995, 1222
PscI ACATGT 2 cut(s) 763, 939
PshBI ATTAAT 1 cut(s) 111
Psp6I CCWGG 3 cut(s) 232, 303, 970
PspFI CCCAGC 1 cut(s) 1223
PspGI CCWGG 3 cut(s) 232, 303, 970
PspN4I GGNNCC 3 cut(s) 480, 1177, 1474
PspPI GGNCC 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 1230
PsuI RGATCY 3 cut(s) 375, 394, 704
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 3 cut(s) 254, 447, 1031
RsaNI GTAC 3 cut(s) 253, 446, 1030
RseI CAYNNNNRTG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 144
SaqAI TTAA 7 cut(s) 111, 174, 281, 944, 1085, 1464, 1518
SatI GCNGC 3 cut(s) 330, 1073, 1275
Sau3AI GATC 7 cut(s) 37, 375, 394, 704, 1053, 1359, 1387
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 3 cut(s) 141, 995, 1222
ScrFI CCNGG 4 cut(s) 234, 305, 345, 972
SduI GDGCHC 2 cut(s) 670, 1105
SfaNI GCATC 5 cut(s) 124, 178, 323, 874, 1186
Sfr274I CTCGAG 1 cut(s) 1230
SfuI TTCGAA 1 cut(s) 1538
SgrAI CRCCGGYG 1 cut(s) 1061
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 1230
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 3 cut(s) 120, 1230, 1347
SmoI CTYRAG 3 cut(s) 120, 1230, 1347
SsiI CCGC 4 cut(s) 191, 348, 1073, 1173
SspI AATATT 1 cut(s) 1126
SspMI CTAG 4 cut(s) 5, 366, 1245, 1428
StyD4I CCNGG 4 cut(s) 232, 303, 343, 970
StyI CCWWGG 2 cut(s) 812, 1244
TaaI ACNGT 3 cut(s) 263, 426, 1284
TaiI ACGT 2 cut(s) 254, 1512
TaqI TCGA 6 cut(s) 145, 771, 1052, 1231, 1439, 1538
TauI GCSGC 1 cut(s) 1075
TfiI GAWTC 5 cut(s) 292, 369, 452, 808, 1249
Tru1I TTAA 7 cut(s) 111, 174, 281, 944, 1085, 1464, 1518
Tru9I TTAA 7 cut(s) 111, 174, 281, 944, 1085, 1464, 1518
TscAI CASTG 2 cut(s) 438, 463
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 329, 1274
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 4 cut(s) 114, 305, 1523, 1551
TspRI CASTG 2 cut(s) 438, 463
Van91I CCANNNNNTGG 2 cut(s) 166, 557
VpaK11BI GGWCC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 3 cut(s) 519, 546, 1024
XbaI TCTAGA 2 cut(s) 365, 1427
XceI RCATGY 2 cut(s) 767, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 1456
XhoI CTCGAG 1 cut(s) 1230
XmaJI CCTAGG 1 cut(s) 1244
XmiI GTMKAC 2 cut(s) 73, 145
XspI CTAG 4 cut(s) 5, 366, 1245, 1428
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.