Rmu_sc0004368.1_g000014

Helitron helicase-like domain at N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004368.1
OG0000080
Physical Location & Seq
Reverse (-)
66061 .. 69090
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004368.1_g000014.1.cds

Sequence Viewer

Length: 2370 bp
atggatcatagagagcgtgcacgtgctagacatcaggaatggagacaatcgatgagttctacacaacatgaagcctatttggcacggcggcgagctcatgctaggggaaagcgactagccgtggaaaatgtaagtgaccatgaacaagaggcgggcccaagtaataggaataggctagctccagtacactccgacaacgagagcataagttcaagagtttcatcctattcccaaaaccatgaccaagatggtacaagggtgcgcttgacccacataagacaattagcccgttcgactacgtctcgaccgaccaatgtggttattcagaattctgtgccttacgagatgcctaatgtcacaatgaataatcacgatgaggaccacaataacaacgagcatatggtgaataatcatgaggatcagaacaacaacactgagctagagaataacccacaggatcagcgcaacagcagtgttgacccagtgcggcgtacaaggagagcagtagtaaattacaactgcgctagagattttaatgagggatggggtgtcccattttgtcgattgcctgcactaagaacatgtccatactgcaatgcacggttatttcatcgagagaccttcaatttgtgttgttcgaaaggaaatattgttctgcctctaataccctctccgccagagatgatccagctcttttctgaccaaacagatgtgggtagaaaattcagacaaaatatccgagcctataataatgtgtttgcgttcacttcaatgggtgtgcatgttgatgaatccattaatcttcaaggtcgtggaatttatacttttcgtgcacaagttttagacagggcactggttgaaaagatacaacagatattgaatcactataatccatttgtccatcaatttcgaagcctcggacagcgccaagacttgcccaattgcaggctcatcataagagagcagccttctaatcaacgtcagtattgtgtaccatctgcatcacaagttgctgctattatagtaggagggggcgacatcaatccgaatggaagagatttaattgtccaaacaattagtggaagactctggaatgttaaagactcggtcggatattacgaccccatgcagtatcctttgttattaccttatggaacatatgggtgggatattaatagtcatgatgagaatggaagacctatgtcatgttgcgactattatgcatatatgttacagtatgttgtagataattacgtgaaaattgaatcccaaaaactcagatggcttcgcagtaaccaagatacaattaggaaagaattttatcaaggacttcaagactcttttattgcaggggaaaacaatgcaggtaacgtcggtcataggacaattctgccatcatcatttgttggaagtccacgtgatatgtaccaacggtaccaagatgcgatggctttggttcaaaagtatggcagaccagatttgtttatcactatgacgtgtaacccgaattgggaagaaattaaaagtgagctactccctagacaaacatcacaagatcgtccagatttagaggtcagggtatttcgttcaaaacttgagcaactaaaagaagacatcatcaccaaaggcgtattgggaagagttattgctcatgctttcgtcgttgaatttcagaaacggggcctaccacatgtacacatgctggtcatgttggatgaaaatgataagcttaataaccctgaagattatgaccgcattgttagagcagaaataccagataaagatgaagagcctcaactttatgatctggtgttgaaacatatgattcacggtccatgtggaaccttaaaccaacagtcttcatgtatgaagaatgggagatgcaataaaagttatccaaaatcatttgcaaatttcactgtgcaaggaaacgatgcatatcctatatatcgaagacgagcaagtcgcttaccagtccctctacgtagatctggagacacaatggtggataatagttgggttgttccttataacccgtggttgttgctacggtatgattgtcacatcaatgttgaaatatgtgggagcataaagagtgtcaaatacttatataagtatgtctacaaaggtcctgatagagttgcagttcaagtgcaatctaacccgaagttcgatgaaataagacaatttgtcgatgcaaggtgggtttgtgcaccagaagctttatggaggatatttaaatttgtaatgaacagaatatatccaacagtcgacagattacaaatacatcttccaaacatgcaacaaatcagattcgatgcaaatgagactgtagaagacattctagcagatgagcatgcacagggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

789

Amino Acids

91.59

Weight (kDa)

8.51

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2031
AasI GACNNNNNNGTC 1 cut(s) 1962
Acc36I ACCTGC 1 cut(s) 1355
Acc65I GGTACC 1 cut(s) 1434
AccB1I GGYRCC 1 cut(s) 1434
AccI GTMKAC 2 cut(s) 2121, 2271
AciI CCGC 5 cut(s) 88, 152, 487, 674, 1753
AclWI GGATC 4 cut(s) 12, 426, 465, 679
AcsI RAATTY 7 cut(s) 328, 722, 816, 1316, 1667, 1912, 2240
AcuI CTGAAG 1 cut(s) 1761
AcvI CACGTG 2 cut(s) 23, 1418
AfaI GTAC 7 cut(s) 186, 253, 493, 993, 1427, 1436, 1695
AfiI CCNNNNNNNGG 2 cut(s) 945, 1510
AflIII ACRYGT 3 cut(s) 581, 1496, 1690
AhdI GACNNNNNGTC 1 cut(s) 2189
AjiI CACGTC 1 cut(s) 1497
AleI CACNNNNGTG 1 cut(s) 2003
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
AluBI AGCT 7 cut(s) 95, 179, 439, 691, 1531, 1729, 2222
AluI AGCT 7 cut(s) 95, 179, 439, 691, 1531, 1729, 2222
Alw21I GWGCWC 4 cut(s) 22, 97, 835, 2215
Alw26I GTCTC 5 cut(s) 37, 306, 611, 1989, 2321
Alw44I GTGCAC 3 cut(s) 18, 831, 2211
AlwI GGATC 4 cut(s) 12, 426, 465, 679
AoxI GGCC 2 cut(s) 154, 1681
ApaI GGGCCC 1 cut(s) 158
ApaLI GTGCAC 3 cut(s) 18, 831, 2211
ApeKI GCWGC 2 cut(s) 964, 1013
ApoI RAATTY 7 cut(s) 328, 722, 816, 1316, 1667, 1912, 2240
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
AseI ATTAAT 2 cut(s) 798, 1173
Asp700I GAANNNNTTC 1 cut(s) 2340
Asp718I GGTACC 1 cut(s) 1434
AspLEI GCGC 4 cut(s) 264, 465, 524, 927
AspS9I GGNCC 6 cut(s) 154, 155, 379, 1681, 1832, 2129
AsuHPI GGTGA 2 cut(s) 415, 1612
AsuII TTCGAA 2 cut(s) 638, 910
AsuNHI GCTAGC 1 cut(s) 175
AvaII GGWCC 3 cut(s) 379, 1832, 2129
BaeGI GKGCMC 5 cut(s) 22, 158, 835, 853, 2215
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BanI GGYRCC 1 cut(s) 1434
BanII GRGCYC 2 cut(s) 97, 158
BbrPI CACGTG 2 cut(s) 23, 1418
BbsI GAAGAC 6 cut(s) 1090, 1201, 1617, 1851, 1960, 2343
Bbv12I GWGCWC 4 cut(s) 22, 97, 835, 2215
BbvI GCAGC 2 cut(s) 976, 1000
BccI CCATC 7 cut(s) 242, 537, 909, 1003, 1275, 1402, 1441
BceAI ACGGC 2 cut(s) 101, 104
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciVI GTATCC 1 cut(s) 1143
BcoDI GTCTC 5 cut(s) 37, 306, 611, 1989, 2321
BfaI CTAG 8 cut(s) 27, 102, 116, 176, 440, 525, 1539, 2345
BfmI CTRYAG 1 cut(s) 2331
BfoI RGCGCY 1 cut(s) 928
BfuAI ACCTGC 1 cut(s) 1355
BfuI GTATCC 1 cut(s) 1143
BglI GCCNNNNNGGC 1 cut(s) 80
BglII AGATCT 1 cut(s) 1988
BisI GCNGC 4 cut(s) 89, 488, 965, 1014
BlsI GCNGC 4 cut(s) 90, 489, 966, 1015
Bme18I GGWCC 3 cut(s) 379, 1832, 2129
BmeRI GACNNNNNGTC 1 cut(s) 2189
BmgBI CACGTC 1 cut(s) 1497
BmgT120I GGNCC 6 cut(s) 154, 155, 379, 1681, 1832, 2129
BmiI GGNNCC 4 cut(s) 156, 1436, 1682, 1843
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 7 cut(s) 336, 1010, 1432, 1871, 1924, 2185, 2308
BmtI GCTAGC 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 476
BoxI GACNNNNGTC 1 cut(s) 1201
BpiI GAAGAC 6 cut(s) 1090, 1201, 1617, 1851, 1960, 2343
BpmI CTGGAG 2 cut(s) 165, 2013
Bpu14I TTCGAA 2 cut(s) 638, 910
BpuEI CTTGAG 1 cut(s) 1616
Bsa29I ATCGAT 1 cut(s) 50
BsaAI YACGTR 4 cut(s) 23, 1255, 1418, 1985
BsaBI GATNNNNATC 1 cut(s) 1938
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 3 cut(s) 120, 916, 2036
Bsc4I CCNNNNNNNGG 2 cut(s) 945, 1510
Bse1I ACTGG 4 cut(s) 182, 482, 858, 1973
Bse3DI GCAATG 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 1938
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 3 cut(s) 120, 916, 2036
BseGI GGATG 3 cut(s) 221, 548, 1720
BseJI GATNNNNATC 1 cut(s) 1938
BseLI CCNNNNNNNGG 2 cut(s) 945, 1510
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 2 cut(s) 426, 1291
BseNI ACTGG 4 cut(s) 182, 482, 858, 1973
BseSI GKGCMC 5 cut(s) 22, 158, 835, 853, 2215
BseXI GCAGC 2 cut(s) 976, 1000
BsgI GTGCAG 1 cut(s) 555
Bsh1285I CGRYCG 2 cut(s) 308, 1110
BshFI GGCC 2 cut(s) 156, 1683
BshNI GGYRCC 1 cut(s) 1434
BshVI ATCGAT 1 cut(s) 50
BsiEI CGRYCG 2 cut(s) 308, 1110
BsiHKAI GWGCWC 4 cut(s) 22, 97, 835, 2215
BslFI GGGAC 2 cut(s) 536, 1961
BslI CCNNNNNNNGG 2 cut(s) 945, 1510
BsmAI GTCTC 5 cut(s) 37, 306, 611, 1989, 2321
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 536, 1961
BsnI GGCC 2 cut(s) 156, 1683
Bso31I GGTCTC 1 cut(s) 611
Bsp119I TTCGAA 2 cut(s) 638, 910
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 6 cut(s) 22, 97, 158, 835, 853, 2215
Bsp1407I TGTACA 1 cut(s) 1693
Bsp143I GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
BspACI CCGC 5 cut(s) 88, 152, 487, 674, 1753
BspANI GGCC 2 cut(s) 156, 1683
BspCNI CTCAG 2 cut(s) 427, 1290
BspDI ATCGAT 1 cut(s) 50
BspHI TCATGA 2 cut(s) 412, 1180
BspLI GGNNCC 4 cut(s) 156, 1436, 1682, 1843
BspMI ACCTGC 1 cut(s) 1355
BspOI GCTAGC 1 cut(s) 179
BspPI GGATC 4 cut(s) 12, 426, 465, 679
BspQI GCTCTTC 1 cut(s) 1782
BspT104I TTCGAA 2 cut(s) 638, 910
BspT107I GGYRCC 1 cut(s) 1434
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 601
BsrGI TGTACA 1 cut(s) 1693
BsrI ACTGG 4 cut(s) 182, 482, 858, 1973
BssECI CCNNGG 3 cut(s) 120, 916, 2036
BssMI GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
Bst4CI ACNGT 9 cut(s) 603, 1236, 1434, 1832, 1857, 1921, 2052, 2269, 2332
Bst6I CTCTTC 3 cut(s) 1048, 1633, 1782
BstAUI TGTACA 1 cut(s) 1693
BstBAI YACGTR 4 cut(s) 23, 1255, 1418, 1985
BstBI TTCGAA 2 cut(s) 638, 910
BstC8I GCNNGC 7 cut(s) 18, 93, 154, 177, 570, 947, 2358
BstDEI CTNAG 3 cut(s) 435, 575, 1277
BstDSI CCRYGG 2 cut(s) 120, 2036
BstF5I GGATG 3 cut(s) 221, 548, 1720
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 4 cut(s) 264, 465, 524, 927
BstKTI GATC 7 cut(s) 7, 421, 460, 687, 1558, 1807, 1991
BstMAI GTCTC 5 cut(s) 37, 306, 611, 1989, 2321
BstMBI GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
BstMCI CGRYCG 2 cut(s) 308, 1110
BstMWI GCNNNNNNNGC 2 cut(s) 80, 2219
BstNSI RCATGY 6 cut(s) 585, 785, 1694, 1702, 2302, 2360
BstPAI GACNNNNGTC 1 cut(s) 1201
BstSFI CTRYAG 1 cut(s) 2331
BstSLI GKGCMC 5 cut(s) 22, 158, 835, 853, 2215
BstSNI TACGTA 1 cut(s) 1985
BstV1I GCAGC 2 cut(s) 976, 1000
BstV2I GAAGAC 6 cut(s) 1090, 1201, 1617, 1851, 1960, 2343
BstX2I RGATCY 1 cut(s) 1988
BstYI RGATCY 1 cut(s) 1988
Bsu15I ATCGAT 1 cut(s) 50
BsuI GTATCC 1 cut(s) 1143
BsuRI GGCC 2 cut(s) 156, 1683
BsuTUI ATCGAT 1 cut(s) 50
BtgI CCRYGG 2 cut(s) 120, 2036
BtgZI GCGATG 1 cut(s) 1460
BtrI CACGTC 1 cut(s) 1497
BtsCI GGATG 3 cut(s) 221, 548, 1720
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 5 cut(s) 432, 478, 489, 851, 1917
BveI ACCTGC 1 cut(s) 1355
Cac8I GCNNGC 7 cut(s) 18, 93, 154, 177, 570, 947, 2358
CciI TCATGA 2 cut(s) 412, 1180
CfoI GCGC 4 cut(s) 264, 465, 524, 927
Cfr13I GGNCC 6 cut(s) 154, 155, 379, 1681, 1832, 2129
ClaI ATCGAT 1 cut(s) 50
Csp6I GTAC 7 cut(s) 185, 252, 492, 992, 1426, 1435, 1694
CviQI GTAC 7 cut(s) 185, 252, 492, 992, 1426, 1435, 1694
DdeI CTNAG 3 cut(s) 435, 575, 1277
DpnI GATC 7 cut(s) 6, 420, 459, 686, 1557, 1806, 1990
DpnII GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
DraI TTTAAA 1 cut(s) 2239
DrdI GACNNNNNNGTC 1 cut(s) 1962
DriI GACNNNNNGTC 1 cut(s) 2189
DseDI GACNNNNNNGTC 1 cut(s) 1962
Eam1104I CTCTTC 3 cut(s) 1048, 1633, 1782
Eam1105I GACNNNNNGTC 1 cut(s) 2189
EarI CTCTTC 3 cut(s) 1048, 1633, 1782
EciI GGCGGA 1 cut(s) 663
Ecl136II GAGCTC 1 cut(s) 95
Eco105I TACGTA 1 cut(s) 1985
Eco24I GRGCYC 2 cut(s) 97, 158
Eco31I GGTCTC 1 cut(s) 611
Eco47I GGWCC 3 cut(s) 379, 1832, 2129
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 1761
Eco72I CACGTG 2 cut(s) 23, 1418
EcoICRI GAGCTC 1 cut(s) 95
EcoO109I RGGNCCY 2 cut(s) 1681, 2129
EcoRI GAATTC 1 cut(s) 328
EcoT22I ATGCAT 2 cut(s) 1225, 1939
EcoT38I GRGCYC 2 cut(s) 97, 158
Esp3I CGTCTC 1 cut(s) 306
FaqI GGGAC 2 cut(s) 536, 1961
FauI CCCGC 1 cut(s) 145
FauNDI CATATG 3 cut(s) 399, 1159, 1821
FblI GTMKAC 2 cut(s) 2121, 2271
Fnu4HI GCNGC 4 cut(s) 89, 488, 965, 1014
FokI GGATG 3 cut(s) 208, 555, 1727
FriOI GRGCYC 2 cut(s) 97, 158
Fsp4HI GCNGC 4 cut(s) 89, 488, 965, 1014
FspBI CTAG 8 cut(s) 27, 102, 116, 176, 440, 525, 1539, 2345
GlaI GCGC 4 cut(s) 263, 464, 523, 926
GluI GCNGC 4 cut(s) 89, 488, 965, 1014
GsuI CTGGAG 2 cut(s) 165, 2013
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 2 cut(s) 156, 1683
HhaI GCGC 4 cut(s) 264, 465, 524, 927
Hin6I GCGC 4 cut(s) 262, 463, 522, 925
HinP1I GCGC 4 cut(s) 262, 463, 522, 925
HincII GTYRAC 2 cut(s) 478, 2272
HindII GTYRAC 2 cut(s) 478, 2272
HindIII AAGCTT 2 cut(s) 1727, 2220
HinfI GANTC 8 cut(s) 791, 880, 1086, 1103, 1265, 1337, 1825, 2313
HphI GGTGA 2 cut(s) 415, 1612
Hpy99I CGWCG 2 cut(s) 1376, 1664
HpyAV CCTTC 2 cut(s) 631, 978
HpyCH4III ACNGT 9 cut(s) 603, 1236, 1434, 1832, 1857, 1921, 2052, 2269, 2332
HpyCH4IV ACGT 8 cut(s) 22, 299, 979, 1254, 1371, 1417, 1496, 1984
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 2219
HpyF3I CTNAG 3 cut(s) 435, 575, 1277
HpySE526I ACGT 8 cut(s) 22, 299, 979, 1254, 1371, 1417, 1496, 1984
HspAI GCGC 4 cut(s) 262, 463, 522, 925
KpnI GGTACC 1 cut(s) 1438
Kzo9I GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
LguI GCTCTTC 1 cut(s) 1782
LmnI GCTCC 2 cut(s) 184, 2085
Lsp1109I GCAGC 2 cut(s) 976, 1000
LweI GCATC 7 cut(s) 336, 1010, 1432, 1871, 1924, 2185, 2308
MaeI CTAG 8 cut(s) 27, 102, 116, 176, 440, 525, 1539, 2345
MaeII ACGT 8 cut(s) 22, 299, 979, 1254, 1371, 1417, 1496, 1984
MaeIII GTNAC 7 cut(s) 134, 355, 1230, 1292, 1367, 1499, 2060
MalI GATC 7 cut(s) 6, 420, 459, 686, 1557, 1806, 1990
MboI GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
MfeI CAATTG 1 cut(s) 940
MflI RGATCY 1 cut(s) 1988
MhlI GDGCHC 6 cut(s) 22, 97, 158, 835, 853, 2215
MlyI GAGTC 3 cut(s) 1080, 1097, 1331
MmeI TCCRAC 5 cut(s) 216, 1090, 1387, 1692, 2288
Mph1103I ATGCAT 2 cut(s) 1225, 1939
MroXI GAANNNNTTC 1 cut(s) 2340
MslI CAYNNNNRTG 5 cut(s) 770, 786, 1162, 2003, 2067
MunI CAATTG 1 cut(s) 940
MwoI GCNNNNNNNGC 2 cut(s) 80, 2219
NdeI CATATG 3 cut(s) 399, 1159, 1821
NdeII GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
NheI GCTAGC 1 cut(s) 175
NlaIV GGNNCC 4 cut(s) 156, 1436, 1682, 1843
NmuCI GTSAC 3 cut(s) 134, 355, 2060
NsiI ATGCAT 2 cut(s) 1225, 1939
NspI RCATGY 6 cut(s) 585, 785, 1694, 1702, 2302, 2360
NspV TTCGAA 2 cut(s) 638, 910
OliI CACNNNNGTG 1 cut(s) 2003
PaeI GCATGC 1 cut(s) 2360
PagI TCATGA 2 cut(s) 412, 1180
PciI ACATGT 2 cut(s) 581, 1690
PciSI GCTCTTC 1 cut(s) 1782
PcsI WCGNNNNNNNCGW 3 cut(s) 305, 1116, 1502
PdmI GAANNNNTTC 1 cut(s) 2340
PfeI GAWTC 5 cut(s) 791, 880, 1265, 1825, 2313
PflFI GACNNNGTC 2 cut(s) 298, 1106
PkrI GCNGC 4 cut(s) 90, 489, 966, 1015
PleI GAGTC 3 cut(s) 1080, 1097, 1331
PmaCI CACGTG 2 cut(s) 23, 1418
PmlI CACGTG 2 cut(s) 23, 1418
PpsI GAGTC 3 cut(s) 1080, 1097, 1331
Ppu21I YACGTR 4 cut(s) 23, 1255, 1418, 1985
PpuMI RGGWCCY 1 cut(s) 2129
PscI ACATGT 2 cut(s) 581, 1690
PshAI GACNNNNGTC 1 cut(s) 1201
PshBI ATTAAT 2 cut(s) 798, 1173
PsiI TTATAA 1 cut(s) 2031
Psp124BI GAGCTC 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 2129
PspCI CACGTG 2 cut(s) 23, 1418
PspN4I GGNNCC 4 cut(s) 156, 1436, 1682, 1843
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 6 cut(s) 154, 155, 379, 1681, 1832, 2129
PspPPI RGGWCCY 1 cut(s) 2129
PsuI RGATCY 1 cut(s) 1988
PsyI GACNNNGTC 2 cut(s) 298, 1106
RsaI GTAC 7 cut(s) 186, 253, 493, 993, 1427, 1436, 1695
RsaNI GTAC 7 cut(s) 185, 252, 492, 992, 1426, 1435, 1694
RseI CAYNNNNRTG 5 cut(s) 770, 786, 1162, 2003, 2067
SacI GAGCTC 1 cut(s) 97
SalI GTCGAC 1 cut(s) 2270
SapI GCTCTTC 1 cut(s) 1782
SatI GCNGC 4 cut(s) 89, 488, 965, 1014
Sau3AI GATC 7 cut(s) 4, 418, 457, 684, 1555, 1804, 1988
Sau96I GGNCC 6 cut(s) 154, 155, 379, 1681, 1832, 2129
SchI GAGTC 3 cut(s) 1080, 1097, 1331
SduI GDGCHC 6 cut(s) 22, 97, 158, 835, 853, 2215
SfaNI GCATC 7 cut(s) 336, 1010, 1432, 1871, 1924, 2185, 2308
SfcI CTRYAG 1 cut(s) 2331
SfuI TTCGAA 2 cut(s) 638, 910
SinI GGWCC 3 cut(s) 379, 1832, 2129
SmiI ATTTAAAT 1 cut(s) 2239
SmiMI CAYNNNNRTG 5 cut(s) 770, 786, 1162, 2003, 2067
SmlI CTYRAG 1 cut(s) 1595
SmoI CTYRAG 1 cut(s) 1595
SnaBI TACGTA 1 cut(s) 1985
SphI GCATGC 1 cut(s) 2360
SsiI CCGC 5 cut(s) 88, 152, 487, 674, 1753
SspI AATATT 1 cut(s) 649
SspMI CTAG 8 cut(s) 27, 102, 116, 176, 440, 525, 1539, 2345
SstI GAGCTC 1 cut(s) 97
SwaI ATTTAAAT 1 cut(s) 2239
TaaI ACNGT 9 cut(s) 603, 1236, 1434, 1832, 1857, 1921, 2052, 2269, 2332
TaiI ACGT 8 cut(s) 25, 302, 982, 1257, 1374, 1420, 1499, 1987
TaqII GACCGA 3 cut(s) 322, 1096, 1364
TatI WGTACW 2 cut(s) 184, 1693
TauI GCSGC 2 cut(s) 91, 490
TfiI GAWTC 5 cut(s) 791, 880, 1265, 1825, 2313
TscAI CASTG 5 cut(s) 439, 478, 489, 858, 1924
TseFI GTSAC 3 cut(s) 134, 355, 2060
TseI GCWGC 2 cut(s) 964, 1013
Tsp45I GTSAC 3 cut(s) 134, 355, 2060
TspRI CASTG 5 cut(s) 439, 478, 489, 858, 1924
Tth111I GACNNNGTC 2 cut(s) 298, 1106
VneI GTGCAC 3 cut(s) 18, 831, 2211
VpaK11BI GGWCC 3 cut(s) 379, 1832, 2129
VspI ATTAAT 2 cut(s) 798, 1173
XapI RAATTY 7 cut(s) 328, 722, 816, 1316, 1667, 1912, 2240
XceI RCATGY 6 cut(s) 585, 785, 1694, 1702, 2302, 2360
XcmI CCANNNNNNNNNTGG 4 cut(s) 245, 1076, 1630, 2223
XmiI GTMKAC 2 cut(s) 2121, 2271
XmnI GAANNNNTTC 1 cut(s) 2340
XspI CTAG 8 cut(s) 27, 102, 116, 176, 440, 525, 1539, 2345
Zsp2I ATGCAT 2 cut(s) 1225, 1939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.