Belongs to the helicase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helitron_like_N | PF14214 | 483 - 655 | 3.5e-44 | Helitron helicase-like domain at N-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 807, 1772, 1986, 2286 |
| AatII | GACGTC | 1 cut(s) | 2218 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 764, 2905 |
| AccI | GTMKAC | 2 cut(s) | 1159, 1744 |
| AccIII | TCCGGA | 1 cut(s) | 1913 |
| AciI | CCGC | 3 cut(s) | 137, 2100, 2964 |
| AclI | AACGTT | 1 cut(s) | 463 |
| AclWI | GGATC | 5 cut(s) | 61, 345, 749, 874, 1007 |
| AcoI | YGGCCR | 2 cut(s) | 895, 1796 |
| AcuI | CTGAAG | 6 cut(s) | 36, 171, 387, 1863, 2634, 2958 |
| AcvI | CACGTG | 1 cut(s) | 124 |
| AcyI | GRCGYC | 1 cut(s) | 2215 |
| AfaI | GTAC | 6 cut(s) | 120, 903, 1325, 1621, 2523, 2611 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 764, 935, 2786, 2905 |
| AflIII | ACRYGT | 2 cut(s) | 121, 1326 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2757 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 751, 783 |
| Alw21I | GWGCWC | 1 cut(s) | 2398 |
| Alw26I | GTCTC | 1 cut(s) | 12 |
| AlwI | GGATC | 5 cut(s) | 61, 345, 749, 874, 1007 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2003, 2975 |
| Ama87I | CYCGRG | 1 cut(s) | 2397 |
| Aor13HI | TCCGGA | 1 cut(s) | 1913 |
| AoxI | GGCC | 3 cut(s) | 895, 1796, 2093 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1313, 1345 |
| AseI | ATTAAT | 8 cut(s) | 891, 1388, 1641, 1899, 2049, 2322, 2376, 2862 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2061, 2143 |
| AspS9I | GGNCC | 3 cut(s) | 872, 2093, 2384 |
| AsuHPI | GGTGA | 4 cut(s) | 599, 1247, 2190, 2801 |
| AsuII | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| AvaI | CYCGRG | 1 cut(s) | 2397 |
| AvaII | GGWCC | 2 cut(s) | 872, 2384 |
| BalI | TGGCCA | 2 cut(s) | 897, 1798 |
| BanII | GRGCYC | 1 cut(s) | 2398 |
| BbrPI | CACGTG | 1 cut(s) | 124 |
| Bbv12I | GWGCWC | 1 cut(s) | 2398 |
| BccI | CCATC | 3 cut(s) | 929, 1361, 2129 |
| BclI | TGATCA | 4 cut(s) | 607, 847, 1710, 2224 |
| BcoDI | GTCTC | 1 cut(s) | 12 |
| BfaI | CTAG | 3 cut(s) | 1701, 2036, 3087 |
| BglII | AGATCT | 1 cut(s) | 506 |
| BisI | GCNGC | 1 cut(s) | 137 |
| BlsI | GCNGC | 1 cut(s) | 138 |
| BmcAI | AGTACT | 1 cut(s) | 2611 |
| Bme18I | GGWCC | 2 cut(s) | 872, 2384 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2757 |
| BmeT110I | CYCGRG | 1 cut(s) | 2397 |
| BmgT120I | GGNCC | 3 cut(s) | 872, 2093, 2384 |
| BmiI | GGNNCC | 2 cut(s) | 88, 246 |
| BmsI | GCATC | 7 cut(s) | 412, 440, 487, 1522, 1634, 1717, 2675 |
| BpmI | CTGGAG | 1 cut(s) | 654 |
| Bpu14I | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| Bsa29I | ATCGAT | 1 cut(s) | 3202 |
| BsaAI | YACGTR | 1 cut(s) | 124 |
| BsaBI | GATNNNNATC | 1 cut(s) | 300 |
| BsaHI | GRCGYC | 1 cut(s) | 2215 |
| BsaJI | CCNNGG | 1 cut(s) | 90 |
| BsaWI | WCCGGW | 1 cut(s) | 1913 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 764, 935, 2786, 2905 |
| Bse1I | ACTGG | 4 cut(s) | 501, 868, 1291, 1696 |
| Bse3DI | GCAATG | 3 cut(s) | 610, 1331, 1792 |
| Bse8I | GATNNNNATC | 1 cut(s) | 300 |
| BseAI | TCCGGA | 1 cut(s) | 1913 |
| BseCI | ATCGAT | 1 cut(s) | 3202 |
| BseDI | CCNNGG | 1 cut(s) | 90 |
| BseGI | GGATG | 4 cut(s) | 400, 412, 1315, 2512 |
| BseJI | GATNNNNATC | 1 cut(s) | 300 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 764, 935, 2786, 2905 |
| BseMI | GCAATG | 3 cut(s) | 610, 1331, 1792 |
| BseMII | CTCAG | 2 cut(s) | 426, 971 |
| BseNI | ACTGG | 4 cut(s) | 501, 868, 1291, 1696 |
| BseRI | GAGGAG | 3 cut(s) | 48, 80, 2454 |
| BshFI | GGCC | 3 cut(s) | 897, 1798, 2095 |
| BshVI | ATCGAT | 1 cut(s) | 3202 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2398 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2397 |
| BsiSI | CCGG | 2 cut(s) | 1914, 3122 |
| BslFI | GGGAC | 2 cut(s) | 2264, 2723 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 764, 935, 2786, 2905 |
| BsmAI | GTCTC | 1 cut(s) | 12 |
| BsmBI | CGTCTC | 1 cut(s) | 12 |
| BsmFI | GGGAC | 2 cut(s) | 2264, 2723 |
| BsmI | GAATGC | 1 cut(s) | 1009 |
| BsnI | GGCC | 3 cut(s) | 897, 1798, 2095 |
| BsoBI | CYCGRG | 1 cut(s) | 2397 |
| Bsp119I | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2398 |
| Bsp13I | TCCGGA | 1 cut(s) | 1913 |
| Bsp1407I | TGTACA | 1 cut(s) | 2521 |
| BspACI | CCGC | 3 cut(s) | 137, 2100, 2964 |
| BspANI | GGCC | 3 cut(s) | 897, 1798, 2095 |
| BspCNI | CTCAG | 2 cut(s) | 427, 970 |
| BspDI | ATCGAT | 1 cut(s) | 3202 |
| BspEI | TCCGGA | 1 cut(s) | 1913 |
| BspHI | TCATGA | 2 cut(s) | 292, 2467 |
| BspLI | GGNNCC | 2 cut(s) | 88, 246 |
| BspPI | GGATC | 5 cut(s) | 61, 345, 749, 874, 1007 |
| BspQI | GCTCTTC | 1 cut(s) | 393 |
| BspT104I | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| BsrDI | GCAATG | 3 cut(s) | 610, 1331, 1792 |
| BsrGI | TGTACA | 1 cut(s) | 2521 |
| BsrI | ACTGG | 4 cut(s) | 501, 868, 1291, 1696 |
| BssECI | CCNNGG | 1 cut(s) | 90 |
| BssNAI | GTATAC | 1 cut(s) | 1160 |
| BssNI | GRCGYC | 1 cut(s) | 2215 |
| Bst1107I | GTATAC | 1 cut(s) | 1160 |
| Bst4CI | ACNGT | 5 cut(s) | 226, 290, 518, 1546, 1754 |
| Bst6I | CTCTTC | 3 cut(s) | 57, 65, 393 |
| BstACI | GRCGYC | 1 cut(s) | 2215 |
| BstAUI | TGTACA | 1 cut(s) | 2521 |
| BstBAI | YACGTR | 1 cut(s) | 124 |
| BstBI | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| BstC8I | GCNNGC | 6 cut(s) | 206, 429, 524, 732, 1443, 2896 |
| BstDEI | CTNAG | 2 cut(s) | 435, 957 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2784 |
| BstF5I | GGATG | 4 cut(s) | 400, 412, 1315, 2512 |
| BstMAI | GTCTC | 1 cut(s) | 12 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1451, 1631 |
| BstNSI | RCATGY | 2 cut(s) | 624, 1330 |
| BstX2I | RGATCY | 2 cut(s) | 506, 754 |
| BstYI | RGATCY | 2 cut(s) | 506, 754 |
| BstZ17I | GTATAC | 1 cut(s) | 1160 |
| Bsu15I | ATCGAT | 1 cut(s) | 3202 |
| BsuRI | GGCC | 3 cut(s) | 897, 1798, 2095 |
| BsuTUI | ATCGAT | 1 cut(s) | 3202 |
| BtgZI | GCGATG | 1 cut(s) | 2934 |
| BtsCI | GGATG | 4 cut(s) | 400, 412, 1315, 2512 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 3 cut(s) | 514, 552, 861 |
| Cac8I | GCNNGC | 6 cut(s) | 206, 429, 524, 732, 1443, 2896 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2003, 2975 |
| CciI | TCATGA | 2 cut(s) | 292, 2467 |
| Cfr13I | GGNCC | 3 cut(s) | 872, 2093, 2384 |
| ClaI | ATCGAT | 1 cut(s) | 3202 |
| Csp6I | GTAC | 6 cut(s) | 119, 902, 1324, 1620, 2522, 2610 |
| CviAII | CATG | 9 cut(s) | 293, 621, 1022, 1327, 1952, 2090, 2128, 2334, 2468 |
| CviQI | GTAC | 6 cut(s) | 119, 902, 1324, 1620, 2522, 2610 |
| DdeI | CTNAG | 2 cut(s) | 435, 957 |
| DraI | TTTAAA | 5 cut(s) | 886, 1819, 1876, 2368, 2641 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2757 |
| EaeI | YGGCCR | 2 cut(s) | 895, 1796 |
| Eam1104I | CTCTTC | 3 cut(s) | 57, 65, 393 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2757 |
| EarI | CTCTTC | 3 cut(s) | 57, 65, 393 |
| Ecl136II | GAGCTC | 1 cut(s) | 2396 |
| Eco24I | GRGCYC | 1 cut(s) | 2398 |
| Eco32I | GATATC | 2 cut(s) | 1434, 1615 |
| Eco47I | GGWCC | 2 cut(s) | 872, 2384 |
| Eco53kI | GAGCTC | 1 cut(s) | 2396 |
| Eco57I | CTGAAG | 6 cut(s) | 36, 171, 387, 1863, 2634, 2958 |
| Eco72I | CACGTG | 1 cut(s) | 124 |
| Eco88I | CYCGRG | 1 cut(s) | 2397 |
| EcoICRI | GAGCTC | 1 cut(s) | 2396 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2784 |
| EcoO109I | RGGNCCY | 1 cut(s) | 872 |
| EcoRV | GATATC | 2 cut(s) | 1434, 1615 |
| EcoT38I | GRGCYC | 1 cut(s) | 2398 |
| Esp3I | CGTCTC | 1 cut(s) | 12 |
| FaeI | CATG | 9 cut(s) | 296, 624, 1025, 1330, 1955, 2093, 2131, 2337, 2471 |
| FaqI | GGGAC | 2 cut(s) | 2264, 2723 |
| FatI | CATG | 9 cut(s) | 292, 620, 1021, 1326, 1951, 2089, 2127, 2333, 2467 |
| FauNDI | CATATG | 2 cut(s) | 1357, 1959 |
| FbaI | TGATCA | 4 cut(s) | 607, 847, 1710, 2224 |
| FblI | GTMKAC | 2 cut(s) | 1159, 1744 |
| Fnu4HI | GCNGC | 1 cut(s) | 137 |
| FokI | GGATG | 4 cut(s) | 399, 407, 1302, 2499 |
| FriOI | GRGCYC | 1 cut(s) | 2398 |
| Fsp4HI | GCNGC | 1 cut(s) | 137 |
| FspBI | CTAG | 3 cut(s) | 1701, 2036, 3087 |
| GluI | GCNGC | 1 cut(s) | 137 |
| GsuI | CTGGAG | 1 cut(s) | 654 |
| HaeIII | GGCC | 3 cut(s) | 897, 1798, 2095 |
| HapII | CCGG | 2 cut(s) | 1914, 3122 |
| Hin1I | GRCGYC | 1 cut(s) | 2215 |
| Hin1II | CATG | 9 cut(s) | 296, 624, 1025, 1330, 1955, 2093, 2131, 2337, 2471 |
| HincII | GTYRAC | 1 cut(s) | 2987 |
| HindII | GTYRAC | 1 cut(s) | 2987 |
| HindIII | AAGCTT | 1 cut(s) | 2892 |
| HpaII | CCGG | 2 cut(s) | 1914, 3122 |
| HphI | GGTGA | 4 cut(s) | 599, 1247, 2190, 2801 |
| Hpy166II | GTNNAC | 6 cut(s) | 121, 261, 1160, 1505, 1745, 2987 |
| Hpy8I | GTNNAC | 6 cut(s) | 121, 261, 1160, 1505, 1745, 2987 |
| Hpy99I | CGWCG | 1 cut(s) | 2220 |
| HpyAV | CCTTC | 3 cut(s) | 939, 1152, 2211 |
| HpyCH4III | ACNGT | 5 cut(s) | 226, 290, 518, 1546, 1754 |
| HpyCH4IV | ACGT | 6 cut(s) | 123, 463, 1300, 2215, 2783, 3018 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1451, 1631 |
| HpyF3I | CTNAG | 2 cut(s) | 435, 957 |
| HpySE526I | ACGT | 6 cut(s) | 123, 463, 1300, 2215, 2783, 3018 |
| Hsp92I | GRCGYC | 1 cut(s) | 2215 |
| Hsp92II | CATG | 9 cut(s) | 296, 624, 1025, 1330, 1955, 2093, 2131, 2337, 2471 |
| Kpn2I | TCCGGA | 1 cut(s) | 1913 |
| Ksp22I | TGATCA | 4 cut(s) | 607, 847, 1710, 2224 |
| LguI | GCTCTTC | 1 cut(s) | 393 |
| LmnI | GCTCC | 3 cut(s) | 86, 250, 836 |
| LweI | GCATC | 7 cut(s) | 412, 440, 487, 1522, 1634, 1717, 2675 |
| MaeI | CTAG | 3 cut(s) | 1701, 2036, 3087 |
| MaeII | ACGT | 6 cut(s) | 123, 463, 1300, 2215, 2783, 3018 |
| MaeIII | GTNAC | 2 cut(s) | 279, 3014 |
| MfeI | CAATTG | 1 cut(s) | 1008 |
| MflI | RGATCY | 2 cut(s) | 506, 754 |
| MhlI | GDGCHC | 1 cut(s) | 2398 |
| MlsI | TGGCCA | 2 cut(s) | 897, 1798 |
| MluNI | TGGCCA | 2 cut(s) | 897, 1798 |
| MmeI | TCCRAC | 4 cut(s) | 208, 2708, 2717, 3079 |
| Mox20I | TGGCCA | 2 cut(s) | 897, 1798 |
| MroI | TCCGGA | 1 cut(s) | 1913 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2061, 2143 |
| MscI | TGGCCA | 2 cut(s) | 897, 1798 |
| MslI | CAYNNNNRTG | 3 cut(s) | 603, 1026, 2322 |
| Msp20I | TGGCCA | 2 cut(s) | 897, 1798 |
| MspA1I | CMGCKG | 1 cut(s) | 139 |
| MspI | CCGG | 2 cut(s) | 1914, 3122 |
| MunI | CAATTG | 1 cut(s) | 1008 |
| Mva1269I | GAATGC | 1 cut(s) | 1009 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1451, 1631 |
| NdeI | CATATG | 2 cut(s) | 1357, 1959 |
| NlaIII | CATG | 9 cut(s) | 296, 624, 1025, 1330, 1955, 2093, 2131, 2337, 2471 |
| NlaIV | GGNNCC | 2 cut(s) | 88, 246 |
| NmuCI | GTSAC | 1 cut(s) | 3014 |
| NspI | RCATGY | 2 cut(s) | 624, 1330 |
| NspV | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| PaeR7I | CTCGAG | 1 cut(s) | 2397 |
| PagI | TCATGA | 2 cut(s) | 292, 2467 |
| PciI | ACATGT | 1 cut(s) | 1326 |
| PciSI | GCTCTTC | 1 cut(s) | 393 |
| PctI | GAATGC | 1 cut(s) | 1009 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2061, 2143 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 764, 2905 |
| PkrI | GCNGC | 1 cut(s) | 138 |
| PmaCI | CACGTG | 1 cut(s) | 124 |
| PmlI | CACGTG | 1 cut(s) | 124 |
| Ppu21I | YACGTR | 1 cut(s) | 124 |
| PpuMI | RGGWCCY | 1 cut(s) | 872 |
| PscI | ACATGT | 1 cut(s) | 1326 |
| PshBI | ATTAAT | 8 cut(s) | 891, 1388, 1641, 1899, 2049, 2322, 2376, 2862 |
| PsiI | TTATAA | 4 cut(s) | 807, 1772, 1986, 2286 |
| Psp124BI | GAGCTC | 1 cut(s) | 2398 |
| Psp1406I | AACGTT | 1 cut(s) | 463 |
| Psp5II | RGGWCCY | 1 cut(s) | 872 |
| PspCI | CACGTG | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 2 cut(s) | 88, 246 |
| PspPI | GGNCC | 3 cut(s) | 872, 2093, 2384 |
| PspPPI | RGGWCCY | 1 cut(s) | 872 |
| PspXI | VCTCGAGB | 1 cut(s) | 2397 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2003, 2975 |
| PsuI | RGATCY | 2 cut(s) | 506, 754 |
| RsaI | GTAC | 6 cut(s) | 120, 903, 1325, 1621, 2523, 2611 |
| RsaNI | GTAC | 6 cut(s) | 119, 902, 1324, 1620, 2522, 2610 |
| RseI | CAYNNNNRTG | 3 cut(s) | 603, 1026, 2322 |
| SacI | GAGCTC | 1 cut(s) | 2398 |
| SapI | GCTCTTC | 1 cut(s) | 393 |
| SatI | GCNGC | 1 cut(s) | 137 |
| Sau96I | GGNCC | 3 cut(s) | 872, 2093, 2384 |
| ScaI | AGTACT | 1 cut(s) | 2611 |
| SduI | GDGCHC | 1 cut(s) | 2398 |
| SfaNI | GCATC | 7 cut(s) | 412, 440, 487, 1522, 1634, 1717, 2675 |
| Sfr274I | CTCGAG | 1 cut(s) | 2397 |
| SfuI | TTCGAA | 3 cut(s) | 1105, 1594, 2147 |
| SinI | GGWCC | 2 cut(s) | 872, 2384 |
| SlaI | CTCGAG | 1 cut(s) | 2397 |
| SmiI | ATTTAAAT | 1 cut(s) | 2368 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 603, 1026, 2322 |
| SmlI | CTYRAG | 1 cut(s) | 2397 |
| SmoI | CTYRAG | 1 cut(s) | 2397 |
| SsiI | CCGC | 3 cut(s) | 137, 2100, 2964 |
| SspI | AATATT | 8 cut(s) | 595, 1591, 2047, 2360, 2495, 2560, 2821, 3168 |
| SspMI | CTAG | 3 cut(s) | 1701, 2036, 3087 |
| SstI | GAGCTC | 1 cut(s) | 2398 |
| SwaI | ATTTAAAT | 1 cut(s) | 2368 |
| TaaI | ACNGT | 5 cut(s) | 226, 290, 518, 1546, 1754 |
| TaiI | ACGT | 6 cut(s) | 126, 466, 1303, 2218, 2786, 3021 |
| TatI | WGTACW | 5 cut(s) | 901, 1323, 1619, 2521, 2609 |
| TauI | GCSGC | 1 cut(s) | 139 |
| TscAI | CASTG | 3 cut(s) | 521, 559, 868 |
| TseFI | GTSAC | 1 cut(s) | 3014 |
| Tsp45I | GTSAC | 1 cut(s) | 3014 |
| TspRI | CASTG | 3 cut(s) | 521, 559, 868 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 764, 2905 |
| VpaK11BI | GGWCC | 2 cut(s) | 872, 2384 |
| VspI | ATTAAT | 8 cut(s) | 891, 1388, 1641, 1899, 2049, 2322, 2376, 2862 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2784 |
| XceI | RCATGY | 2 cut(s) | 624, 1330 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 255 |
| XhoI | CTCGAG | 1 cut(s) | 2397 |
| XmiI | GTMKAC | 2 cut(s) | 1159, 1744 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2061, 2143 |
| XspI | CTAG | 3 cut(s) | 1701, 2036, 3087 |
| ZraI | GACGTC | 1 cut(s) | 2216 |
| ZrmI | AGTACT | 1 cut(s) | 2611 |