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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 234, 444, 523 |
| AccIII | TCCGGA | 1 cut(s) | 455 |
| AciI | CCGC | 3 cut(s) | 232, 234, 521 |
| AcsI | RAATTY | 3 cut(s) | 181, 403, 478 |
| AcuI | CTGAAG | 1 cut(s) | 440 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 248, 326 |
| AgsI | TTSAA | 1 cut(s) | 408 |
| AjiI | CACGTC | 1 cut(s) | 190 |
| AluBI | AGCT | 1 cut(s) | 424 |
| AluI | AGCT | 1 cut(s) | 424 |
| Alw21I | GWGCWC | 1 cut(s) | 268 |
| Alw26I | GTCTC | 1 cut(s) | 20 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| Aor13HI | TCCGGA | 1 cut(s) | 455 |
| ApoI | RAATTY | 3 cut(s) | 181, 403, 478 |
| AseI | ATTAAT | 1 cut(s) | 32 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 391 |
| AspLEI | GCGC | 2 cut(s) | 446, 525 |
| AsuC2I | CCSGG | 2 cut(s) | 321, 322 |
| AsuII | TTCGAA | 1 cut(s) | 200 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| Bbv12I | GWGCWC | 1 cut(s) | 268 |
| BbvCI | CCTCAGC | 1 cut(s) | 467 |
| BccI | CCATC | 1 cut(s) | 480 |
| BclI | TGATCA | 1 cut(s) | 67 |
| BcnI | CCSGG | 2 cut(s) | 321, 322 |
| BcoDI | GTCTC | 1 cut(s) | 20 |
| BfaI | CTAG | 2 cut(s) | 261, 303 |
| BisI | GCNGC | 1 cut(s) | 232 |
| BlsI | GCNGC | 1 cut(s) | 233 |
| Bme1390I | CCNGG | 2 cut(s) | 321, 322 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgBI | CACGTC | 1 cut(s) | 190 |
| BmrFI | CCNGG | 2 cut(s) | 321, 322 |
| BmsI | GCATC | 2 cut(s) | 86, 149 |
| Bpu10I | CCTNAGC | 1 cut(s) | 467 |
| Bpu14I | TTCGAA | 1 cut(s) | 200 |
| BpuMI | CCSGG | 2 cut(s) | 321, 322 |
| BsaJI | CCNNGG | 3 cut(s) | 232, 320, 321 |
| BsaWI | WCCGGW | 1 cut(s) | 455 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 248, 326 |
| Bse1I | ACTGG | 1 cut(s) | 86 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseAI | TCCGGA | 1 cut(s) | 455 |
| BseDI | CCNNGG | 3 cut(s) | 232, 320, 321 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 248, 326 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 4 cut(s) | 15, 72, 282, 481 |
| BseNI | ACTGG | 1 cut(s) | 86 |
| BseRI | GAGGAG | 1 cut(s) | 231 |
| Bsh1236I | CGCG | 3 cut(s) | 234, 444, 523 |
| Bsh1285I | CGRYCG | 1 cut(s) | 175 |
| BsiEI | CGRYCG | 1 cut(s) | 175 |
| BsiHKAI | GWGCWC | 1 cut(s) | 268 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 3 cut(s) | 321, 456, 509 |
| BslFI | GGGAC | 1 cut(s) | 359 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 248, 326 |
| BsmAI | GTCTC | 1 cut(s) | 20 |
| BsmFI | GGGAC | 1 cut(s) | 359 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp119I | TTCGAA | 1 cut(s) | 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 268 |
| Bsp13I | TCCGGA | 1 cut(s) | 455 |
| Bsp143I | GATC | 2 cut(s) | 67, 172 |
| BspACI | CCGC | 3 cut(s) | 232, 234, 521 |
| BspCNI | CTCAG | 4 cut(s) | 16, 73, 283, 480 |
| BspEI | TCCGGA | 1 cut(s) | 455 |
| BspFNI | CGCG | 3 cut(s) | 234, 444, 523 |
| BspT104I | TTCGAA | 1 cut(s) | 200 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrI | ACTGG | 1 cut(s) | 86 |
| BssECI | CCNNGG | 3 cut(s) | 232, 320, 321 |
| BssMI | GATC | 2 cut(s) | 67, 172 |
| Bst6I | CTCTTC | 1 cut(s) | 325 |
| BstBI | TTCGAA | 1 cut(s) | 200 |
| BstDEI | CTNAG | 4 cut(s) | 24, 81, 291, 467 |
| BstDSI | CCRYGG | 1 cut(s) | 232 |
| BstFNI | CGCG | 3 cut(s) | 234, 444, 523 |
| BstHHI | GCGC | 2 cut(s) | 446, 525 |
| BstKTI | GATC | 2 cut(s) | 70, 175 |
| BstMAI | GTCTC | 1 cut(s) | 20 |
| BstMBI | GATC | 2 cut(s) | 67, 172 |
| BstMCI | CGRYCG | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 278, 531 |
| BstSCI | CCNGG | 2 cut(s) | 319, 320 |
| BstUI | CGCG | 3 cut(s) | 234, 444, 523 |
| BtgI | CCRYGG | 1 cut(s) | 232 |
| BtrI | CACGTC | 1 cut(s) | 190 |
| BtsIMutI | CAGTG | 1 cut(s) | 93 |
| CfoI | GCGC | 2 cut(s) | 446, 525 |
| Cfr42I | CCGCGG | 1 cut(s) | 235 |
| Cfr9I | CCCGGG | 1 cut(s) | 320 |
| CviAII | CATG | 1 cut(s) | 248 |
| CviJI | RGCY | 6 cut(s) | 85, 319, 424, 471, 517, 534 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 319, 424, 471, 517, 534 |
| DdeI | CTNAG | 4 cut(s) | 24, 81, 291, 467 |
| DpnI | GATC | 2 cut(s) | 69, 174 |
| DpnII | GATC | 2 cut(s) | 67, 172 |
| Eam1104I | CTCTTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 1 cut(s) | 325 |
| Eco57I | CTGAAG | 1 cut(s) | 440 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| EcoRI | GAATTC | 1 cut(s) | 403 |
| EcoT22I | ATGCAT | 2 cut(s) | 79, 142 |
| FaeI | CATG | 1 cut(s) | 251 |
| FaiI | YATR | 2 cut(s) | 229, 249 |
| FaqI | GGGAC | 1 cut(s) | 359 |
| FatI | CATG | 1 cut(s) | 247 |
| FauI | CCCGC | 1 cut(s) | 528 |
| FbaI | TGATCA | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 1 cut(s) | 232 |
| Fsp4HI | GCNGC | 1 cut(s) | 232 |
| FspBI | CTAG | 2 cut(s) | 261, 303 |
| GlaI | GCGC | 2 cut(s) | 445, 524 |
| GluI | GCNGC | 1 cut(s) | 232 |
| HapII | CCGG | 3 cut(s) | 321, 456, 509 |
| HhaI | GCGC | 2 cut(s) | 446, 525 |
| Hin1II | CATG | 1 cut(s) | 251 |
| Hin6I | GCGC | 2 cut(s) | 444, 523 |
| HinP1I | GCGC | 2 cut(s) | 444, 523 |
| HindIII | AAGCTT | 1 cut(s) | 422 |
| HinfI | GANTC | 3 cut(s) | 103, 431, 439 |
| HpaII | CCGG | 3 cut(s) | 321, 456, 509 |
| Hpy188I | TCNGA | 6 cut(s) | 25, 51, 82, 108, 187, 477 |
| Hpy188III | TCNNGA | 5 cut(s) | 115, 312, 428, 456, 500 |
| Hpy99I | CGWCG | 1 cut(s) | 439 |
| HpyAV | CCTTC | 2 cut(s) | 208, 560 |
| HpyCH4IV | ACGT | 2 cut(s) | 110, 189 |
| HpyCH4V | TGCA | 3 cut(s) | 77, 140, 272 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 278, 531 |
| HpyF3I | CTNAG | 4 cut(s) | 24, 81, 291, 467 |
| HpySE526I | ACGT | 2 cut(s) | 110, 189 |
| Hsp92II | CATG | 1 cut(s) | 251 |
| HspAI | GCGC | 2 cut(s) | 444, 523 |
| Kpn2I | TCCGGA | 1 cut(s) | 455 |
| Ksp22I | TGATCA | 1 cut(s) | 67 |
| KspI | CCGCGG | 1 cut(s) | 235 |
| Kzo9I | GATC | 2 cut(s) | 67, 172 |
| LpnPI | CCDG | 8 cut(s) | 99, 263, 334, 381, 397, 441, 469, 522 |
| LweI | GCATC | 2 cut(s) | 86, 149 |
| MaeI | CTAG | 2 cut(s) | 261, 303 |
| MaeII | ACGT | 2 cut(s) | 110, 189 |
| MalI | GATC | 2 cut(s) | 69, 174 |
| MboI | GATC | 2 cut(s) | 67, 172 |
| MboII | GAAGA | 3 cut(s) | 189, 342, 549 |
| MhlI | GDGCHC | 1 cut(s) | 268 |
| MluCI | AATT | 3 cut(s) | 181, 403, 478 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MmeI | TCCRAC | 1 cut(s) | 380 |
| MnlI | CCTC | 7 cut(s) | 151, 252, 286, 326, 336, 371, 476 |
| Mph1103I | ATGCAT | 2 cut(s) | 79, 142 |
| MroI | TCCGGA | 1 cut(s) | 455 |
| MroXI | GAANNNNTTC | 1 cut(s) | 391 |
| MseI | TTAA | 2 cut(s) | 32, 92 |
| MspA1I | CMGCKG | 1 cut(s) | 234 |
| MspI | CCGG | 3 cut(s) | 321, 456, 509 |
| MspR9I | CCNGG | 2 cut(s) | 321, 322 |
| MvnI | CGCG | 3 cut(s) | 234, 444, 523 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 278, 531 |
| NciI | CCSGG | 2 cut(s) | 321, 322 |
| NdeII | GATC | 2 cut(s) | 67, 172 |
| NlaIII | CATG | 1 cut(s) | 251 |
| NsiI | ATGCAT | 2 cut(s) | 79, 142 |
| NspV | TTCGAA | 1 cut(s) | 200 |
| PdmI | GAANNNNTTC | 1 cut(s) | 391 |
| PfeI | GAWTC | 2 cut(s) | 103, 431 |
| PkrI | GCNGC | 1 cut(s) | 233 |
| Ple19I | CGATCG | 1 cut(s) | 175 |
| PleI | GAGTC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 433 |
| PshBI | ATTAAT | 1 cut(s) | 32 |
| PvuI | CGATCG | 1 cut(s) | 175 |
| SacII | CCGCGG | 1 cut(s) | 235 |
| SaqAI | TTAA | 2 cut(s) | 32, 92 |
| SatI | GCNGC | 1 cut(s) | 232 |
| Sau3AI | GATC | 2 cut(s) | 67, 172 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 2 cut(s) | 321, 322 |
| SduI | GDGCHC | 1 cut(s) | 268 |
| SetI | ASST | 5 cut(s) | 113, 192, 337, 426, 549 |
| SfaNI | GCATC | 2 cut(s) | 86, 149 |
| Sfr303I | CCGCGG | 1 cut(s) | 235 |
| SfuI | TTCGAA | 1 cut(s) | 200 |
| SgrBI | CCGCGG | 1 cut(s) | 235 |
| SmaI | CCCGGG | 1 cut(s) | 322 |
| Sse9I | AATT | 3 cut(s) | 181, 403, 478 |
| SsiI | CCGC | 3 cut(s) | 232, 234, 521 |
| SspMI | CTAG | 2 cut(s) | 261, 303 |
| StyD4I | CCNGG | 2 cut(s) | 319, 320 |
| TaiI | ACGT | 2 cut(s) | 113, 192 |
| TaqI | TCGA | 7 cut(s) | 11, 114, 175, 200, 244, 434, 501 |
| TasI | AATT | 3 cut(s) | 181, 403, 478 |
| TauI | GCSGC | 1 cut(s) | 234 |
| TfiI | GAWTC | 2 cut(s) | 103, 431 |
| Tru1I | TTAA | 2 cut(s) | 32, 92 |
| Tru9I | TTAA | 2 cut(s) | 32, 92 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TspDTI | ATGAA | 3 cut(s) | 141, 481, 572 |
| TspGWI | ACGGA | 2 cut(s) | 300, 378 |
| TspMI | CCCGGG | 1 cut(s) | 320 |
| TspRI | CASTG | 1 cut(s) | 93 |
| VspI | ATTAAT | 1 cut(s) | 32 |
| XapI | RAATTY | 3 cut(s) | 181, 403, 478 |
| XmaI | CCCGGG | 1 cut(s) | 320 |
| XmnI | GAANNNNTTC | 1 cut(s) | 391 |
| XspI | CTAG | 2 cut(s) | 261, 303 |
| Zsp2I | ATGCAT | 2 cut(s) | 79, 142 |