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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 320 |
| AccI | GTMKAC | 1 cut(s) | 294 |
| AccII | CGCG | 1 cut(s) | 312 |
| AciI | CCGC | 3 cut(s) | 150, 190, 273 |
| AcsI | RAATTY | 1 cut(s) | 265 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AfaI | GTAC | 1 cut(s) | 216 |
| AfeI | AGCGCT | 1 cut(s) | 58 |
| AgsI | TTSAA | 2 cut(s) | 374, 441 |
| AjnI | CCWGG | 1 cut(s) | 14 |
| AluBI | AGCT | 1 cut(s) | 158 |
| AluI | AGCT | 1 cut(s) | 158 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 460 |
| Aor51HI | AGCGCT | 1 cut(s) | 58 |
| ApeKI | GCWGC | 4 cut(s) | 54, 59, 351, 392 |
| ApoI | RAATTY | 1 cut(s) | 265 |
| AspLEI | GCGC | 3 cut(s) | 59, 356, 460 |
| AsuHPI | GGTGA | 2 cut(s) | 59, 263 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BbvI | GCAGC | 4 cut(s) | 46, 66, 363, 379 |
| BccI | CCATC | 3 cut(s) | 170, 242, 425 |
| BciT130I | CCWGG | 1 cut(s) | 16 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfoI | RGCGCY | 2 cut(s) | 60, 461 |
| BisI | GCNGC | 5 cut(s) | 55, 60, 150, 352, 393 |
| BlsI | GCNGC | 5 cut(s) | 56, 61, 151, 353, 394 |
| Bme1390I | CCNGG | 1 cut(s) | 16 |
| BmiI | GGNNCC | 2 cut(s) | 6, 38 |
| BmrFI | CCNGG | 1 cut(s) | 16 |
| BoxI | GACNNNNGTC | 1 cut(s) | 236 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| BsaJI | CCNNGG | 1 cut(s) | 15 |
| Bse1I | ACTGG | 2 cut(s) | 208, 345 |
| Bse3DI | GCAATG | 1 cut(s) | 136 |
| BseBI | CCWGG | 1 cut(s) | 16 |
| BseDI | CCNNGG | 1 cut(s) | 15 |
| BseGI | GGATG | 1 cut(s) | 436 |
| BseMI | GCAATG | 1 cut(s) | 136 |
| BseMII | CTCAG | 2 cut(s) | 119, 417 |
| BseNI | ACTGG | 2 cut(s) | 208, 345 |
| BseXI | GCAGC | 4 cut(s) | 46, 66, 363, 379 |
| Bsh1236I | CGCG | 1 cut(s) | 312 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| Bsp1286I | GDGCHC | 1 cut(s) | 79 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| Bsp68I | TCGCGA | 1 cut(s) | 312 |
| BspACI | CCGC | 3 cut(s) | 150, 190, 273 |
| BspCNI | CTCAG | 2 cut(s) | 118, 416 |
| BspFNI | CGCG | 1 cut(s) | 312 |
| BspLI | GGNNCC | 2 cut(s) | 6, 38 |
| BsrDI | GCAATG | 1 cut(s) | 136 |
| BsrI | ACTGG | 2 cut(s) | 208, 345 |
| BssECI | CCNNGG | 1 cut(s) | 15 |
| BssMI | GATC | 1 cut(s) | 133 |
| Bst2UI | CCWGG | 1 cut(s) | 16 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| BstDEI | CTNAG | 3 cut(s) | 105, 241, 403 |
| BstF5I | GGATG | 1 cut(s) | 436 |
| BstFNI | CGCG | 1 cut(s) | 312 |
| BstH2I | RGCGCY | 2 cut(s) | 60, 461 |
| BstHHI | GCGC | 3 cut(s) | 59, 356, 460 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 155 |
| BstNI | CCWGG | 1 cut(s) | 16 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 236 |
| BstSCI | CCNGG | 1 cut(s) | 14 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| BstUI | CGCG | 1 cut(s) | 312 |
| BstV1I | GCAGC | 4 cut(s) | 46, 66, 363, 379 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BtgZI | GCGATG | 1 cut(s) | 293 |
| BtsCI | GGATG | 1 cut(s) | 436 |
| BtuMI | TCGCGA | 1 cut(s) | 312 |
| CaiI | CAGNNNCTG | 1 cut(s) | 460 |
| CfoI | GCGC | 3 cut(s) | 59, 356, 460 |
| Csp6I | GTAC | 1 cut(s) | 215 |
| CviJI | RGCY | 3 cut(s) | 5, 158, 220 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 158, 220 |
| CviQI | GTAC | 1 cut(s) | 215 |
| DdeI | CTNAG | 3 cut(s) | 105, 241, 403 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| DraI | TTTAAA | 1 cut(s) | 520 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 320 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 320 |
| Eco47III | AGCGCT | 1 cut(s) | 58 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| EcoRII | CCWGG | 1 cut(s) | 14 |
| FaiI | YATR | 8 cut(s) | 70, 87, 116, 155, 283, 285, 537, 539 |
| FauNDI | CATATG | 1 cut(s) | 537 |
| FblI | GTMKAC | 1 cut(s) | 294 |
| Fnu4HI | GCNGC | 5 cut(s) | 55, 60, 150, 352, 393 |
| FokI | GGATG | 1 cut(s) | 443 |
| Fsp4HI | GCNGC | 5 cut(s) | 55, 60, 150, 352, 393 |
| FspBI | CTAG | 1 cut(s) | 41 |
| GlaI | GCGC | 3 cut(s) | 58, 355, 459 |
| GluI | GCNGC | 5 cut(s) | 55, 60, 150, 352, 393 |
| HaeII | RGCGCY | 2 cut(s) | 60, 461 |
| HhaI | GCGC | 3 cut(s) | 59, 356, 460 |
| Hin6I | GCGC | 3 cut(s) | 57, 354, 458 |
| HinP1I | GCGC | 3 cut(s) | 57, 354, 458 |
| HinfI | GANTC | 3 cut(s) | 237, 437, 511 |
| HphI | GGTGA | 2 cut(s) | 59, 263 |
| Hpy166II | GTNNAC | 2 cut(s) | 295, 400 |
| Hpy188I | TCNGA | 4 cut(s) | 9, 138, 175, 502 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 311, 325, 380 |
| Hpy8I | GTNNAC | 2 cut(s) | 295, 400 |
| HpyAV | CCTTC | 2 cut(s) | 38, 473 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 1 cut(s) | 54 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 155 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 241, 403 |
| HspAI | GCGC | 3 cut(s) | 57, 354, 458 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LmnI | GCTCC | 2 cut(s) | 10, 327 |
| LpnPI | CCDG | 7 cut(s) | 28, 92, 189, 273, 310, 358, 440 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 66, 363, 379 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MaeIII | GTNAC | 1 cut(s) | 199 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 3 cut(s) | 22, 257, 266 |
| MhlI | GDGCHC | 1 cut(s) | 79 |
| MluCI | AATT | 2 cut(s) | 64, 265 |
| MlyI | GAGTC | 2 cut(s) | 246, 520 |
| MnlI | CCTC | 2 cut(s) | 18, 420 |
| MseI | TTAA | 1 cut(s) | 519 |
| MspR9I | CCNGG | 1 cut(s) | 16 |
| MvaI | CCWGG | 1 cut(s) | 16 |
| MvnI | CGCG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 155 |
| NdeI | CATATG | 1 cut(s) | 537 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 38 |
| NruI | TCGCGA | 1 cut(s) | 312 |
| PfeI | GAWTC | 1 cut(s) | 437 |
| PkrI | GCNGC | 5 cut(s) | 56, 61, 151, 353, 394 |
| PleI | GAGTC | 2 cut(s) | 245, 519 |
| PpsI | GAGTC | 2 cut(s) | 245, 519 |
| PshAI | GACNNNNGTC | 1 cut(s) | 236 |
| Psp6I | CCWGG | 1 cut(s) | 14 |
| PspGI | CCWGG | 1 cut(s) | 14 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 38 |
| PstNI | CAGNNNCTG | 1 cut(s) | 460 |
| RruI | TCGCGA | 1 cut(s) | 312 |
| RsaI | GTAC | 1 cut(s) | 216 |
| RsaNI | GTAC | 1 cut(s) | 215 |
| SaqAI | TTAA | 1 cut(s) | 519 |
| SatI | GCNGC | 5 cut(s) | 55, 60, 150, 352, 393 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| SchI | GAGTC | 2 cut(s) | 246, 520 |
| ScrFI | CCNGG | 1 cut(s) | 16 |
| SduI | GDGCHC | 1 cut(s) | 79 |
| SetI | ASST | 5 cut(s) | 38, 49, 98, 160, 484 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| Sse9I | AATT | 2 cut(s) | 64, 265 |
| SsiI | CCGC | 3 cut(s) | 150, 190, 273 |
| SspMI | CTAG | 1 cut(s) | 41 |
| StyD4I | CCNGG | 1 cut(s) | 14 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaqI | TCGA | 1 cut(s) | 408 |
| TasI | AATT | 2 cut(s) | 64, 265 |
| TatI | WGTACW | 1 cut(s) | 214 |
| TauI | GCSGC | 1 cut(s) | 152 |
| TfiI | GAWTC | 1 cut(s) | 437 |
| Tru1I | TTAA | 1 cut(s) | 519 |
| Tru9I | TTAA | 1 cut(s) | 519 |
| TseI | GCWGC | 4 cut(s) | 54, 59, 351, 392 |
| TspDTI | ATGAA | 2 cut(s) | 300, 358 |
| XapI | RAATTY | 1 cut(s) | 265 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 200 |
| XmiI | GTMKAC | 1 cut(s) | 294 |
| XspI | CTAG | 1 cut(s) | 41 |