Helitron helicase-like domain at N-terminus
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helitron_like_N | PF14214 | 18 - 64 | 3.5e-12 | Helitron helicase-like domain at N-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 378 |
| Acc36I | ACCTGC | 1 cut(s) | 948 |
| Acc65I | GGTACC | 1 cut(s) | 391 |
| AccB1I | GGYRCC | 1 cut(s) | 391 |
| AclWI | GGATC | 2 cut(s) | 39, 656 |
| AcsI | RAATTY | 6 cut(s) | 164, 328, 656, 852, 888, 932 |
| AcuI | CTGAAG | 1 cut(s) | 942 |
| AfaI | GTAC | 2 cut(s) | 393, 521 |
| AgeI | ACCGGT | 1 cut(s) | 388 |
| AgsI | TTSAA | 7 cut(s) | 14, 164, 170, 491, 655, 733, 1024 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 54 |
| AjnI | CCWGG | 1 cut(s) | 71 |
| AluBI | AGCT | 2 cut(s) | 227, 568 |
| AluI | AGCT | 2 cut(s) | 227, 568 |
| Alw21I | GWGCWC | 2 cut(s) | 631, 774 |
| Alw26I | GTCTC | 1 cut(s) | 364 |
| Alw44I | GTGCAC | 1 cut(s) | 627 |
| AlwI | GGATC | 2 cut(s) | 39, 656 |
| AoxI | GGCC | 2 cut(s) | 26, 178 |
| ApaLI | GTGCAC | 1 cut(s) | 627 |
| ApeKI | GCWGC | 3 cut(s) | 143, 568, 1031 |
| ApoI | RAATTY | 6 cut(s) | 164, 328, 656, 852, 888, 932 |
| AsiGI | ACCGGT | 1 cut(s) | 388 |
| Asp718I | GGTACC | 1 cut(s) | 391 |
| AspS9I | GGNCC | 2 cut(s) | 545, 968 |
| AsuHPI | GGTGA | 5 cut(s) | 34, 61, 796, 907, 938 |
| AvaII | GGWCC | 2 cut(s) | 545, 968 |
| BaeGI | GKGCMC | 1 cut(s) | 631 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 1051 |
| BanI | GGYRCC | 1 cut(s) | 391 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| Bbv12I | GWGCWC | 2 cut(s) | 631, 774 |
| BbvI | GCAGC | 3 cut(s) | 130, 555, 1043 |
| BccI | CCATC | 1 cut(s) | 412 |
| BciT130I | CCWGG | 1 cut(s) | 73 |
| BcoDI | GTCTC | 1 cut(s) | 364 |
| BfaI | CTAG | 1 cut(s) | 1052 |
| BfuAI | ACCTGC | 1 cut(s) | 948 |
| BisI | GCNGC | 3 cut(s) | 144, 569, 1032 |
| BlsI | GCNGC | 3 cut(s) | 145, 570, 1033 |
| BmcAI | AGTACT | 1 cut(s) | 521 |
| Bme1390I | CCNGG | 1 cut(s) | 73 |
| Bme18I | GGWCC | 2 cut(s) | 545, 968 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 2 cut(s) | 545, 968 |
| BmiI | GGNNCC | 3 cut(s) | 252, 393, 441 |
| BmrFI | CCNGG | 1 cut(s) | 73 |
| BmsI | GCATC | 4 cut(s) | 256, 340, 601, 817 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 1 cut(s) | 584 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 452 |
| BsaWI | WCCGGW | 1 cut(s) | 388 |
| Bse118I | RCCGGY | 1 cut(s) | 388 |
| Bse3DI | GCAATG | 1 cut(s) | 669 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 2 cut(s) | 72, 452 |
| BseGI | GGATG | 2 cut(s) | 826, 832 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseMI | GCAATG | 1 cut(s) | 669 |
| BseMII | CTCAG | 1 cut(s) | 786 |
| BseSI | GKGCMC | 1 cut(s) | 631 |
| BseXI | GCAGC | 3 cut(s) | 130, 555, 1043 |
| BseYI | CCCAGC | 1 cut(s) | 130 |
| BsgI | GTGCAG | 2 cut(s) | 129, 293 |
| BshFI | GGCC | 2 cut(s) | 28, 180 |
| BshNI | GGYRCC | 1 cut(s) | 391 |
| BshTI | ACCGGT | 1 cut(s) | 388 |
| BsiHKAI | GWGCWC | 2 cut(s) | 631, 774 |
| BsiSI | CCGG | 2 cut(s) | 29, 389 |
| BsmAI | GTCTC | 1 cut(s) | 364 |
| BsmBI | CGTCTC | 1 cut(s) | 364 |
| BsnI | GGCC | 2 cut(s) | 28, 180 |
| Bsp1286I | GDGCHC | 2 cut(s) | 631, 774 |
| Bsp143I | GATC | 4 cut(s) | 31, 211, 648, 974 |
| Bsp19I | CCATGG | 1 cut(s) | 452 |
| BspANI | GGCC | 2 cut(s) | 28, 180 |
| BspCNI | CTCAG | 1 cut(s) | 787 |
| BspHI | TCATGA | 1 cut(s) | 982 |
| BspLI | GGNNCC | 3 cut(s) | 252, 393, 441 |
| BspMI | ACCTGC | 1 cut(s) | 948 |
| BspPI | GGATC | 2 cut(s) | 39, 656 |
| BspT107I | GGYRCC | 1 cut(s) | 391 |
| BsrDI | GCAATG | 1 cut(s) | 669 |
| BsrFI | RCCGGY | 1 cut(s) | 388 |
| BssAI | RCCGGY | 1 cut(s) | 388 |
| BssECI | CCNNGG | 2 cut(s) | 72, 452 |
| BssMI | GATC | 4 cut(s) | 31, 211, 648, 974 |
| BssT1I | CCWWGG | 1 cut(s) | 452 |
| Bst2UI | CCWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 7 cut(s) | 56, 337, 431, 468, 685, 748, 997 |
| BstC8I | GCNNGC | 2 cut(s) | 774, 1029 |
| BstDEI | CTNAG | 2 cut(s) | 401, 795 |
| BstDSI | CCRYGG | 1 cut(s) | 452 |
| BstF5I | GGATG | 2 cut(s) | 826, 832 |
| BstKTI | GATC | 4 cut(s) | 34, 214, 651, 977 |
| BstMAI | GTCTC | 1 cut(s) | 364 |
| BstMBI | GATC | 4 cut(s) | 31, 211, 648, 974 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 149, 306, 635 |
| BstNI | CCWGG | 1 cut(s) | 73 |
| BstNSI | RCATGY | 1 cut(s) | 152 |
| BstSCI | CCNGG | 1 cut(s) | 71 |
| BstSLI | GKGCMC | 1 cut(s) | 631 |
| BstV1I | GCAGC | 3 cut(s) | 130, 555, 1043 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| BstX2I | RGATCY | 2 cut(s) | 31, 648 |
| BstYI | RGATCY | 2 cut(s) | 31, 648 |
| BsuRI | GGCC | 2 cut(s) | 28, 180 |
| BtgI | CCRYGG | 1 cut(s) | 452 |
| BtsCI | GGATG | 2 cut(s) | 826, 832 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 2 cut(s) | 276, 333 |
| BveI | ACCTGC | 1 cut(s) | 948 |
| Cac8I | GCNNGC | 2 cut(s) | 774, 1029 |
| CciI | TCATGA | 1 cut(s) | 982 |
| Cfr10I | RCCGGY | 1 cut(s) | 388 |
| Cfr13I | GGNCC | 2 cut(s) | 545, 968 |
| Csp6I | GTAC | 2 cut(s) | 392, 520 |
| CspAI | ACCGGT | 1 cut(s) | 388 |
| CviAII | CATG | 6 cut(s) | 83, 149, 279, 453, 959, 983 |
| CviJI | RGCY | 9 cut(s) | 5, 28, 143, 180, 227, 253, 309, 568, 638 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 28, 143, 180, 227, 253, 309, 568, 638 |
| CviQI | GTAC | 2 cut(s) | 392, 520 |
| DdeI | CTNAG | 2 cut(s) | 401, 795 |
| DpnI | GATC | 4 cut(s) | 33, 213, 650, 976 |
| DpnII | GATC | 4 cut(s) | 31, 211, 648, 974 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 378 |
| DriI | GACNNNNNGTC | 1 cut(s) | 54 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 54 |
| Eco130I | CCWWGG | 1 cut(s) | 452 |
| Eco47I | GGWCC | 2 cut(s) | 545, 968 |
| Eco57I | CTGAAG | 1 cut(s) | 942 |
| EcoO109I | RGGNCCY | 1 cut(s) | 545 |
| EcoRII | CCWGG | 1 cut(s) | 71 |
| EcoT14I | CCWWGG | 1 cut(s) | 452 |
| EcoT22I | ATGCAT | 1 cut(s) | 355 |
| ErhI | CCWWGG | 1 cut(s) | 452 |
| Esp3I | CGTCTC | 1 cut(s) | 364 |
| FaeI | CATG | 6 cut(s) | 86, 152, 282, 456, 962, 986 |
| FatI | CATG | 6 cut(s) | 82, 148, 278, 452, 958, 982 |
| FauNDI | CATATG | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 3 cut(s) | 144, 569, 1032 |
| FokI | GGATG | 2 cut(s) | 833, 839 |
| Fsp4HI | GCNGC | 3 cut(s) | 144, 569, 1032 |
| FspBI | CTAG | 1 cut(s) | 1052 |
| GluI | GCNGC | 3 cut(s) | 144, 569, 1032 |
| GsaI | CCCAGC | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 28, 180 |
| HapII | CCGG | 2 cut(s) | 29, 389 |
| Hin1II | CATG | 6 cut(s) | 86, 152, 282, 456, 962, 986 |
| HpaII | CCGG | 2 cut(s) | 29, 389 |
| HphI | GGTGA | 5 cut(s) | 34, 61, 796, 907, 938 |
| Hpy166II | GTNNAC | 2 cut(s) | 386, 629 |
| Hpy188I | TCNGA | 4 cut(s) | 369, 922, 965, 1073 |
| Hpy188III | TCNNGA | 5 cut(s) | 59, 548, 848, 857, 983 |
| Hpy8I | GTNNAC | 2 cut(s) | 386, 629 |
| HpyAV | CCTTC | 3 cut(s) | 897, 917, 959 |
| HpyCH4III | ACNGT | 7 cut(s) | 56, 337, 431, 468, 685, 748, 997 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 149, 306, 635 |
| HpyF3I | CTNAG | 2 cut(s) | 401, 795 |
| Hsp92II | CATG | 6 cut(s) | 86, 152, 282, 456, 962, 986 |
| KpnI | GGTACC | 1 cut(s) | 395 |
| Kzo9I | GATC | 4 cut(s) | 31, 211, 648, 974 |
| LmnI | GCTCC | 2 cut(s) | 250, 501 |
| Lsp1109I | GCAGC | 3 cut(s) | 130, 555, 1043 |
| LweI | GCATC | 4 cut(s) | 256, 340, 601, 817 |
| MaeI | CTAG | 1 cut(s) | 1052 |
| MaeIII | GTNAC | 2 cut(s) | 67, 476 |
| MalI | GATC | 4 cut(s) | 33, 213, 650, 976 |
| MboI | GATC | 4 cut(s) | 31, 211, 648, 974 |
| MboII | GAAGA | 4 cut(s) | 119, 422, 643, 698 |
| MflI | RGATCY | 2 cut(s) | 31, 648 |
| MhlI | GDGCHC | 2 cut(s) | 631, 774 |
| MmeI | TCCRAC | 1 cut(s) | 704 |
| MnlI | CCTC | 6 cut(s) | 235, 264, 628, 639, 817, 959 |
| Mph1103I | ATGCAT | 1 cut(s) | 355 |
| MseI | TTAA | 3 cut(s) | 101, 192, 954 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspI | CCGG | 2 cut(s) | 29, 389 |
| MspR9I | CCNGG | 1 cut(s) | 73 |
| MvaI | CCWGG | 1 cut(s) | 73 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 149, 306, 635 |
| NcoI | CCATGG | 1 cut(s) | 452 |
| NdeI | CATATG | 1 cut(s) | 238 |
| NdeII | GATC | 4 cut(s) | 31, 211, 648, 974 |
| NlaIII | CATG | 6 cut(s) | 86, 152, 282, 456, 962, 986 |
| NlaIV | GGNNCC | 3 cut(s) | 252, 393, 441 |
| NmuCI | GTSAC | 2 cut(s) | 67, 476 |
| NsiI | ATGCAT | 1 cut(s) | 355 |
| NspI | RCATGY | 1 cut(s) | 152 |
| PagI | TCATGA | 1 cut(s) | 982 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 379 |
| PinAI | ACCGGT | 1 cut(s) | 388 |
| PkrI | GCNGC | 3 cut(s) | 145, 570, 1033 |
| PpuMI | RGGWCCY | 1 cut(s) | 545 |
| Psp5II | RGGWCCY | 1 cut(s) | 545 |
| Psp6I | CCWGG | 1 cut(s) | 71 |
| PspFI | CCCAGC | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 3 cut(s) | 252, 393, 441 |
| PspPI | GGNCC | 2 cut(s) | 545, 968 |
| PspPPI | RGGWCCY | 1 cut(s) | 545 |
| PsuI | RGATCY | 2 cut(s) | 31, 648 |
| RsaI | GTAC | 2 cut(s) | 393, 521 |
| RsaNI | GTAC | 2 cut(s) | 392, 520 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SaqAI | TTAA | 3 cut(s) | 101, 192, 954 |
| SatI | GCNGC | 3 cut(s) | 144, 569, 1032 |
| Sau3AI | GATC | 4 cut(s) | 31, 211, 648, 974 |
| Sau96I | GGNCC | 2 cut(s) | 545, 968 |
| ScaI | AGTACT | 1 cut(s) | 521 |
| ScrFI | CCNGG | 1 cut(s) | 73 |
| SduI | GDGCHC | 2 cut(s) | 631, 774 |
| SfaNI | GCATC | 4 cut(s) | 256, 340, 601, 817 |
| SinI | GGWCC | 2 cut(s) | 545, 968 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| SmlI | CTYRAG | 1 cut(s) | 563 |
| SmoI | CTYRAG | 1 cut(s) | 563 |
| SspI | AATATT | 1 cut(s) | 757 |
| SspMI | CTAG | 1 cut(s) | 1052 |
| StyD4I | CCNGG | 1 cut(s) | 71 |
| StyI | CCWWGG | 1 cut(s) | 452 |
| TaaI | ACNGT | 7 cut(s) | 56, 337, 431, 468, 685, 748, 997 |
| TaqI | TCGA | 1 cut(s) | 847 |
| TatI | WGTACW | 1 cut(s) | 519 |
| Tru1I | TTAA | 3 cut(s) | 101, 192, 954 |
| Tru9I | TTAA | 3 cut(s) | 101, 192, 954 |
| TscAI | CASTG | 2 cut(s) | 276, 340 |
| TseFI | GTSAC | 2 cut(s) | 67, 476 |
| TseI | GCWGC | 3 cut(s) | 143, 568, 1031 |
| Tsp45I | GTSAC | 2 cut(s) | 67, 476 |
| TspDTI | ATGAA | 7 cut(s) | 71, 219, 299, 606, 680, 756, 971 |
| TspRI | CASTG | 2 cut(s) | 276, 340 |
| VneI | GTGCAC | 1 cut(s) | 627 |
| VpaK11BI | GGWCC | 2 cut(s) | 545, 968 |
| XapI | RAATTY | 6 cut(s) | 164, 328, 656, 852, 888, 932 |
| XceI | RCATGY | 1 cut(s) | 152 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 639, 814 |
| XspI | CTAG | 1 cut(s) | 1052 |
| ZrmI | AGTACT | 1 cut(s) | 521 |
| Zsp2I | ATGCAT | 1 cut(s) | 355 |