Rmu_sc0001083.1_g000003

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001083.1
OG0000080
Physical Location & Seq
Reverse (-)
7751 .. 11619
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001083.1_g000003.1.cds

Sequence Viewer

Length: 2166 bp
atgtgggtgcttcgctgtcaccaccgggtgcttcgccgtctagccctccttcctcaattccactccgagtgggtcggaaaccggaaccgttatcacctctatcacatactgatgaaacgacgccaacattgcgttgagcaagaactgcaagaactaccagatcgagcatattacactgatgagccagcagtagttggccacgcaagaccatcagtttgggtttgggttccttctccgatgacgcgtcatcatttgcttctcactggatgcgtcaaggtcatgaaaatcctctacatcgaggaggacacctcttacaacatactacgcctcttacaaaagtatgttgtagataattatgtaaagattgaatcacagaagctcagatggcttcgtagtaatcaaggaaaatttcggagagaatttcgtcaaggacttcaagactctctacatgcaggagaaaatgatgcaggtaacgttggtcgtagaacaactctgtcatcattgtttattggaagcccatgtgacatgtaccaacaatatcaagatgcaatggctttggttcaaaaatatagtaagccggatctttttatcatcatgacctgtaacccaaattgggaagttagaagtgaactactcctcagacaaaccccacaagaccatcctgatttagtcaccagggtatttcatgcaaaatttgagcaattaaaagaaaacatcatcaacaagagggtgctaggaaaagtggttacacatgctttcgttgttgaatttcaaaaatggggcctatcacatgttcatatgttgattatgttagaagaaaatgacaagcttaataaccctgatgaatatgatcacattgttagagctgaaataccatatgaggacgaggagcctcaactttatgatgcagtgtgtacacatatgattcatggtctatgtggaactcttaactcaaggcagtcatgcgggtttgtgcaccggaggcagtttttcaccataaatcgaatggatgaggatgtaagagcatatttgtatcgagaaattcctgaacattataggtgggataatagcaataaaatttgggtgaaaagaaggaaaaactacaaggctattgggcgaatatacaacgtctcaccatctgaaagtgagaaattttacctgcgtgtccttcttaatcatgtaagaggttcaagatcattttgtgatttgcttactgttaatggtgctctacaaccaacattcaagcaagtagtagagaaacaaggtttgctagaaaatgacaataatatccgatattgtttgttggaggcctctgcaattaagatgccatcaactttgaggagattattcatcataattttggtgtacaatgagccaatcgatgttcgaacattaagggatgaactttttccttttatggtggaagattatccttcatctgatgatgttgcaaaccgaaacaagctcttacaagatttaaatggagtacttgaacaatttaacaaaaacaatagacattttgacctacctaaaatgacaagggagccagaagaaaattcaagaatgccaaggtgtattgaaaacgaactttccgtacatatcttgcaagaagacattgatgtaattgaccgcactaatgatgaccaaaggatcgcctttaacatgatcatggatgcagttcagagaaaaagaagtgcattattttttgttgatggtcctagtggaactgggatgacatatttataccgtgcattgctagcaaacttacgaagaatgaatcatatagtcttagccacaacatcatctggaatagccgcaaatatactgcccgatgggaggacagctctctttagatttaagattctacttaatatagatgcatcatctatgtgttccataagtaaaaaatttgctctggcacaactgatacaagattcgactgcaattatttgggatgaggcacttatgacacatcgacatgtctttgaagcacttgatcgaacttttcgagacataatggatgtcgacttaccattcggtggaaagataatgatttttgggggagattttcgtcaagttctccctgttgttgctaaaggaacaaagtttgaactcattcaagcctccattctgaaatcaacattttgggcacagataagatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

721

Amino Acids

84.54

Weight (kDa)

8.71

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 458, 1167
AccB7I CCANNNNNTGG 1 cut(s) 2039
AccI GTMKAC 1 cut(s) 2025
AccII CGCG 1 cut(s) 244
AciI CCGC 3 cut(s) 966, 1630, 1815
AclI AACGTT 1 cut(s) 474
AclWI GGATC 2 cut(s) 588, 1658
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 9 cut(s) 407, 419, 692, 767, 1041, 1077, 1151, 1555, 1907
AcyI GRCGYC 1 cut(s) 121
AdeI CACNNNGTG 1 cut(s) 28
AfaI GTAC 5 cut(s) 530, 916, 1367, 1488, 1596
AfiI CCNNNNNNNGG 3 cut(s) 613, 1836, 2039
AflIII ACRYGT 4 cut(s) 242, 525, 790, 1978
AjnI CCWGG 1 cut(s) 674
AluBI AGCT 5 cut(s) 379, 829, 866, 1465, 1844
AluI AGCT 5 cut(s) 379, 829, 866, 1465, 1844
Alw21I GWGCWC 2 cut(s) 978, 1228
Alw26I GTCTC 2 cut(s) 1135, 2004
Alw44I GTGCAC 1 cut(s) 974
AlwI GGATC 2 cut(s) 588, 1658
AoxI GGCC 3 cut(s) 196, 781, 1308
ApaLI GTGCAC 1 cut(s) 974
ApoI RAATTY 9 cut(s) 407, 419, 692, 767, 1041, 1077, 1151, 1555, 1907
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 2018, 2050
Asp700I GAANNNNTTC 2 cut(s) 1407, 2115
AspS9I GGNCC 2 cut(s) 781, 1715
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 6 cut(s) 11, 86, 664, 985, 1096, 1125
AsuII TTCGAA 1 cut(s) 1387
AsuNHI GCTAGC 1 cut(s) 1756
AvaII GGWCC 1 cut(s) 1715
BaeGI GKGCMC 2 cut(s) 978, 2152
BalI TGGCCA 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 1617
Bbv12I GWGCWC 2 cut(s) 978, 1228
BccI CCATC 7 cut(s) 217, 378, 666, 1144, 1336, 1706, 1826
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 676
BclI TGATCA 2 cut(s) 850, 1665
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 1135, 2004
BfaI CTAG 5 cut(s) 41, 734, 1271, 1719, 1757
BfuAI ACCTGC 2 cut(s) 458, 1167
BisI GCNGC 1 cut(s) 1815
BlsI GCNGC 1 cut(s) 1816
BmcAI AGTACT 1 cut(s) 1488
Bme1390I CCNGG 2 cut(s) 26, 676
Bme18I GGWCC 1 cut(s) 1715
BmgT120I GGNCC 2 cut(s) 781, 1715
BmiI GGNNCC 5 cut(s) 86, 228, 782, 891, 1545
BmrFI CCNGG 2 cut(s) 26, 676
BmrI ACTGGG 1 cut(s) 1737
BmsI GCATC 8 cut(s) 257, 454, 535, 895, 1314, 1663, 1867, 1889
BmtI GCTAGC 1 cut(s) 1760
BmuI ACTGGG 1 cut(s) 1737
BpiI GAAGAC 1 cut(s) 1617
BplI GAGNNNNNCTC 4 cut(s) 293, 325, 1828, 1860
Bpu14I TTCGAA 1 cut(s) 1387
BpuEI CTTGAG 1 cut(s) 937
BpuMI CCSGG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 1380
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 675, 1568
BsaWI WCCGGW 2 cut(s) 81, 978
Bsc4I CCNNNNNNNGG 3 cut(s) 613, 1836, 2039
Bse1I ACTGG 2 cut(s) 268, 1732
Bse3DI GCAATG 3 cut(s) 127, 555, 1751
BseBI CCWGG 1 cut(s) 676
BseCI ATCGAT 1 cut(s) 1380
BseDI CCNNGG 2 cut(s) 675, 1568
BseGI GGATG 9 cut(s) 272, 658, 1015, 1021, 1405, 1678, 1737, 1960, 2026
BseLI CCNNNNNNNGG 3 cut(s) 613, 1836, 2039
BseMI GCAATG 3 cut(s) 127, 555, 1751
BseMII CTCAG 2 cut(s) 394, 652
BseNI ACTGG 2 cut(s) 268, 1732
BseRI GAGGAG 4 cut(s) 314, 626, 902, 1354
BseSI GKGCMC 2 cut(s) 978, 2152
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 3 cut(s) 198, 783, 1310
BshVI ATCGAT 1 cut(s) 1380
BsiHKAI GWGCWC 2 cut(s) 978, 1228
BsiSI CCGG 4 cut(s) 25, 82, 578, 979
BslI CCNNNNNNNGG 3 cut(s) 613, 1836, 2039
BsmAI GTCTC 2 cut(s) 1135, 2004
BsmBI CGTCTC 1 cut(s) 1135
BsmI GAATGC 1 cut(s) 1569
BsnI GGCC 3 cut(s) 198, 783, 1310
Bsp119I TTCGAA 1 cut(s) 1387
Bsp1286I GDGCHC 3 cut(s) 978, 1228, 2152
Bsp1407I TGTACA 2 cut(s) 914, 1365
Bsp143I GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
BspACI CCGC 3 cut(s) 966, 1630, 1815
BspANI GGCC 3 cut(s) 198, 783, 1310
BspCNI CTCAG 2 cut(s) 393, 651
BspDI ATCGAT 1 cut(s) 1380
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 2 cut(s) 279, 594
BspLI GGNNCC 5 cut(s) 86, 228, 782, 891, 1545
BspMI ACCTGC 2 cut(s) 458, 1167
BspOI GCTAGC 1 cut(s) 1760
BspPI GGATC 2 cut(s) 588, 1658
BspT104I TTCGAA 1 cut(s) 1387
BsrDI GCAATG 3 cut(s) 127, 555, 1751
BsrGI TGTACA 2 cut(s) 914, 1365
BsrI ACTGG 2 cut(s) 268, 1732
BssECI CCNNGG 2 cut(s) 675, 1568
BssMI GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 1568
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 3 cut(s) 89, 1216, 1748
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 145
BstAUI TGTACA 2 cut(s) 914, 1365
BstBI TTCGAA 1 cut(s) 1387
BstC8I GCNNGC 2 cut(s) 186, 1758
BstDEI CTNAG 3 cut(s) 380, 638, 1789
BstF5I GGATG 9 cut(s) 272, 658, 1015, 1021, 1405, 1678, 1737, 1960, 2026
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 7 cut(s) 163, 583, 853, 1196, 1653, 1668, 1999
BstMAI GTCTC 2 cut(s) 1135, 2004
BstMBI GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
BstMWI GCNNNNNNNGC 5 cut(s) 129, 145, 385, 982, 1757
BstNI CCWGG 1 cut(s) 676
BstNSI RCATGY 5 cut(s) 452, 529, 755, 794, 1982
BstSCI CCNGG 2 cut(s) 24, 674
BstSLI GKGCMC 2 cut(s) 978, 2152
BstUI CGCG 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 1617
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 1380
BsuRI GGCC 3 cut(s) 198, 783, 1310
BsuTUI ATCGAT 1 cut(s) 1380
BtsCI GGATG 9 cut(s) 272, 658, 1015, 1021, 1405, 1678, 1737, 1960, 2026
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 3 cut(s) 174, 261, 915
BveI ACCTGC 2 cut(s) 458, 1167
Cac8I GCNNGC 2 cut(s) 186, 1758
CciI TCATGA 2 cut(s) 279, 594
Cfr13I GGNCC 2 cut(s) 781, 1715
ClaI ATCGAT 1 cut(s) 1380
CseI GACGC 4 cut(s) 129, 233, 250, 259
Csp6I GTAC 5 cut(s) 529, 915, 1366, 1487, 1595
CviQI GTAC 5 cut(s) 529, 915, 1366, 1487, 1595
DdeI CTNAG 3 cut(s) 380, 638, 1789
DpnI GATC 7 cut(s) 162, 582, 852, 1195, 1652, 1667, 1998
DpnII GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
DraI TTTAAA 1 cut(s) 1479
DraIII CACNNNGTG 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 1568
Eco147I AGGCCT 1 cut(s) 1310
Eco47I GGWCC 1 cut(s) 1715
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 1568
EcoT22I ATGCAT 1 cut(s) 1882
ErhI CCWWGG 1 cut(s) 1568
Esp3I CGTCTC 1 cut(s) 1135
FauI CCCGC 1 cut(s) 959
FauNDI CATATG 3 cut(s) 798, 877, 921
FbaI TGATCA 2 cut(s) 850, 1665
FblI GTMKAC 1 cut(s) 2025
Fnu4HI GCNGC 1 cut(s) 1815
FokI GGATG 9 cut(s) 279, 645, 1022, 1028, 1412, 1685, 1744, 1967, 2033
Fsp4HI GCNGC 1 cut(s) 1815
FspBI CTAG 5 cut(s) 41, 734, 1271, 1719, 1757
GluI GCNGC 1 cut(s) 1815
HaeIII GGCC 3 cut(s) 198, 783, 1310
HapII CCGG 4 cut(s) 25, 82, 578, 979
HgaI GACGC 4 cut(s) 129, 233, 250, 259
Hin1I GRCGYC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 2026
HindII GTYRAC 1 cut(s) 2026
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 6 cut(s) 368, 440, 925, 1777, 1861, 1934
HpaII CCGG 4 cut(s) 25, 82, 578, 979
HphI GGTGA 6 cut(s) 11, 86, 664, 985, 1096, 1125
Hpy166II GTNNAC 6 cut(s) 629, 915, 917, 976, 1366, 2026
Hpy8I GTNNAC 6 cut(s) 629, 915, 917, 976, 1366, 2026
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 5 cut(s) 59, 240, 1086, 1178, 1443
HpyCH4III ACNGT 3 cut(s) 89, 1216, 1748
HpyCH4IV ACGT 2 cut(s) 474, 1128
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 145, 385, 982, 1757
HpyF3I CTNAG 3 cut(s) 380, 638, 1789
HpySE526I ACGT 2 cut(s) 474, 1128
Hsp92I GRCGYC 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 850, 1665
Kzo9I GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
LmnI GCTCC 2 cut(s) 889, 1543
LweI GCATC 8 cut(s) 257, 454, 535, 895, 1314, 1663, 1867, 1889
MaeI CTAG 5 cut(s) 41, 734, 1271, 1719, 1757
MaeII ACGT 2 cut(s) 474, 1128
MaeIII GTNAC 6 cut(s) 17, 470, 521, 602, 670, 745
MalI GATC 7 cut(s) 162, 582, 852, 1195, 1652, 1667, 1998
MboI GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
MboII GAAGA 5 cut(s) 827, 1436, 1562, 1622, 1782
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 3 cut(s) 978, 1228, 2152
MlsI TGGCCA 1 cut(s) 198
MluI ACGCGT 1 cut(s) 242
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 55, 1284
Mox20I TGGCCA 1 cut(s) 198
Mph1103I ATGCAT 1 cut(s) 1882
MroXI GAANNNNTTC 2 cut(s) 1407, 2115
MscI TGGCCA 1 cut(s) 198
MslI CAYNNNNRTG 4 cut(s) 110, 1667, 1888, 1977
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 4 cut(s) 25, 82, 578, 979
MspR9I CCNGG 2 cut(s) 26, 676
Mva1269I GAATGC 1 cut(s) 1569
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 5 cut(s) 129, 145, 385, 982, 1757
NciI CCSGG 1 cut(s) 26
NdeI CATATG 3 cut(s) 798, 877, 921
NdeII GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
NheI GCTAGC 1 cut(s) 1756
NlaIV GGNNCC 5 cut(s) 86, 228, 782, 891, 1545
NmuCI GTSAC 3 cut(s) 17, 521, 670
NsiI ATGCAT 1 cut(s) 1882
NspI RCATGY 5 cut(s) 452, 529, 755, 794, 1982
NspV TTCGAA 1 cut(s) 1387
PagI TCATGA 2 cut(s) 279, 594
PceI AGGCCT 1 cut(s) 1310
PciI ACATGT 3 cut(s) 525, 790, 1978
PcsI WCGNNNNNNNCGW 2 cut(s) 1590, 2005
PctI GAATGC 1 cut(s) 1569
PdmI GAANNNNTTC 2 cut(s) 1407, 2115
PfeI GAWTC 5 cut(s) 368, 925, 1777, 1861, 1934
PflMI CCANNNNNTGG 1 cut(s) 2039
PkrI GCNGC 1 cut(s) 1816
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PscI ACATGT 3 cut(s) 525, 790, 1978
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 674
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 5 cut(s) 86, 228, 782, 891, 1545
PspPI GGNCC 2 cut(s) 781, 1715
PsrI GAACNNNNNNTAC 2 cut(s) 1578, 1610
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 5 cut(s) 530, 916, 1367, 1488, 1596
RsaNI GTAC 5 cut(s) 529, 915, 1366, 1487, 1595
RseI CAYNNNNRTG 4 cut(s) 110, 1667, 1888, 1977
SalI GTCGAC 1 cut(s) 2024
SatI GCNGC 1 cut(s) 1815
Sau3AI GATC 7 cut(s) 160, 580, 850, 1193, 1650, 1665, 1996
Sau96I GGNCC 2 cut(s) 781, 1715
ScaI AGTACT 1 cut(s) 1488
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 2 cut(s) 26, 676
SduI GDGCHC 3 cut(s) 978, 1228, 2152
SfaNI GCATC 8 cut(s) 257, 454, 535, 895, 1314, 1663, 1867, 1889
SfuI TTCGAA 1 cut(s) 1387
SinI GGWCC 1 cut(s) 1715
SmiI ATTTAAAT 1 cut(s) 1479
SmiMI CAYNNNNRTG 4 cut(s) 110, 1667, 1888, 1977
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
SseBI AGGCCT 1 cut(s) 1310
SsiI CCGC 3 cut(s) 966, 1630, 1815
SspMI CTAG 5 cut(s) 41, 734, 1271, 1719, 1757
StuI AGGCCT 1 cut(s) 1310
StyD4I CCNGG 2 cut(s) 24, 674
StyI CCWWGG 1 cut(s) 1568
SwaI ATTTAAAT 1 cut(s) 1479
TaaI ACNGT 3 cut(s) 89, 1216, 1748
TaiI ACGT 2 cut(s) 477, 1131
TatI WGTACW 3 cut(s) 914, 1365, 1486
TauI GCSGC 1 cut(s) 1817
TfiI GAWTC 5 cut(s) 368, 925, 1777, 1861, 1934
TscAI CASTG 3 cut(s) 181, 268, 915
TseFI GTSAC 3 cut(s) 17, 521, 670
Tsp45I GTSAC 3 cut(s) 17, 521, 670
TspGWI ACGGA 1 cut(s) 1582
TspRI CASTG 3 cut(s) 181, 268, 915
Van91I CCANNNNNTGG 1 cut(s) 2039
VneI GTGCAC 1 cut(s) 974
VpaK11BI GGWCC 1 cut(s) 1715
XapI RAATTY 9 cut(s) 407, 419, 692, 767, 1041, 1077, 1151, 1555, 1907
XceI RCATGY 5 cut(s) 452, 529, 755, 794, 1982
XcmI CCANNNNNNNNNTGG 1 cut(s) 1003
XmiI GTMKAC 1 cut(s) 2025
XmnI GAANNNNTTC 2 cut(s) 1407, 2115
XspI CTAG 5 cut(s) 41, 734, 1271, 1719, 1757
ZrmI AGTACT 1 cut(s) 1488
Zsp2I ATGCAT 1 cut(s) 1882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.