Rw4G000390

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000080
Physical Location & Seq
Forward (+)
925705 .. 927189
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000390.1

Sequence Viewer

Length: 1485 bp
ATGCCAAGGTGTATTGAAGACGAACGTTCCGTACATATCTCTCAAGAAGACATTGATGCAATTGACCACCTTAATGATGACCAAAGGATCGCCTTTAACACGATCATGGATGCAGTTCAGAGAAAAAGAAGTGCATTATTTTTTGTTGATGGTCCTGGTGGAACTGGGAAGACATATTTATACCGTGCATTGCTAGCAAACATACGAAGAATGAATCATATAGTCTTAGCCACAGCATCATCTGGAATAGCTGCAAATATACTGCCCGGCGGGAGGACAGCTCACTCCAGATTTAAGATTCCACTCAATATAGATGCGTCATCTATGTGTTCCATAAGTAAACAGTCTGCTCTGGCACAACTGGTACAGGATTCGACTGCAATTATTTGGGATGAGGCACCTATGACACATCGACATGTCTTTGAAGCACTTGATCGAACTTTTAGAGACATAATGGATGTAGACTTACCATTTGGTGGAAAGATAATGATTTTTGGGGGAGATTTTCGTCAAGTCCTCCCTATTATTCCTAAAGGAACGAAGTCTGAACTCATTCAAGCCTCCATTGTGAAATCAACATTTTGGAGACAGATAAAGATATTGAGACTGAGACAGAATATGAGATCCATAAATGACCACCAATTTGCAGAGTTTCTTCTTCGTGTAGGCGATGGGAGTGAACAAGTCATCAAAGACGAAATGATAAGATTACCGGAATGCATGGTGGTTCCATGGGAAAGCGACCAATCTATCAATCTAATTATTGATGAAATTTTCCCCAATTTGGGTGATCATGTAAATGATGCAAGATACATGGTGGACAGAGCATTGATTACTCCTATAAACGACGATGTGGACGTGTTGAATGAAAAGATAATCCATATGTTTCCAGGTGAAGAAATTACATTGTACTCATTTGACTCTGTTGAAGATGACATTAGAAATTTGTACCAACCAGAGTTTCTGAACTCAATAACCGCAGGTGGCCTGCCACCCCACAAGTTAACTCTGAAAGTAGGTGCTCCAATCATGCTTTTAAGGAATATTGACCCTAAATTGGGATTGTGTAACGGTACTAGATTGTTGTGTCGTGGTTCGTACCAAAATCTGATTGATGCTGAGATACTAACAGGACAGTTTGCTGGGACTAGAGTTTTTCTACCTAGAATTCCTTTGAAAAGTGCCGAAAATGCTGGGCTCCCATTTCAACTAACAAGAAAGCAATTTCCAGTGAAACTGAGCTTCTGTTTGACCATAAACAAATCTCAAGGCCAGACTATCCCACATGTAGGTGTTTACCTCCCAGATCATGTTTTTAGTCATGGACAATTATATGTGGCATTGTCGAGAGGAGTGTCGGAGTCAACCACAAAAGTTTTGGTTAAAAAAGGATCCATAGCTGGTGAAGATGGCGTATTTACAAAAAATGTCGTATTTAAAGAAGTTTTGCTTCATTCAAACACAAATGATAGATCGTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

494

Amino Acids

55.25

Weight (kDa)

6.54

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIF1 PF05970 24 - 228 2.7e-78 PIF1-like helicase
AAA_30 PF13604 24 - 146 8.9e-07 AAA domain
Pif1_2B_dom PF21530 320 - 362 2.9e-21 DNA helicase Pif1, 2B domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 971
Acc36I ACCTGC 1 cut(s) 971
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 462
AciI CCGC 2 cut(s) 270, 978
AclI AACGTT 1 cut(s) 25
AclWI GGATC 4 cut(s) 95, 618, 1386, 1399
AcsI RAATTY 3 cut(s) 771, 943, 1167
AfaI GTAC 6 cut(s) 33, 366, 911, 950, 1075, 1100
AfiI CCNNNNNNNGG 7 cut(s) 273, 476, 784, 785, 1057, 1058, 1289
AflIII ACRYGT 3 cut(s) 415, 858, 1285
AgsI TTSAA 8 cut(s) 17, 425, 557, 865, 929, 1177, 1208, 1458
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 2 cut(s) 154, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AluBI AGCT 4 cut(s) 251, 281, 1242, 1400
AluI AGCT 4 cut(s) 251, 281, 1242, 1400
Alw21I GWGCWC 1 cut(s) 1024
Alw26I GTCTC 4 cut(s) 441, 580, 598, 604
AlwI GGATC 4 cut(s) 95, 618, 1386, 1399
AoxI GGCC 2 cut(s) 985, 1270
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 3 cut(s) 771, 943, 1167
ArsI GACNNNNNNTTYG 4 cut(s) 455, 487, 626, 658
Asp700I GAANNNNTTC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 800, 905, 1415
AsuNHI GCTAGC 1 cut(s) 193
AvaII GGWCC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 1391
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 1200
BbsI GAAGAC 4 cut(s) 24, 54, 176, 1470
Bbv12I GWGCWC 1 cut(s) 1024
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 143, 665, 1403
BciT130I CCWGG 2 cut(s) 156, 891
BclI TGATCA 1 cut(s) 790
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 4 cut(s) 441, 580, 598, 604
BfaI CTAG 4 cut(s) 194, 1077, 1149, 1164
BfuAI ACCTGC 1 cut(s) 971
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 3 cut(s) 156, 267, 891
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 4 cut(s) 399, 729, 1199, 1393
BmrFI CCNGG 3 cut(s) 156, 267, 891
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 6 cut(s) 46, 100, 245, 304, 793, 1105
BmtI GCTAGC 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 4 cut(s) 24, 54, 176, 1470
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 1 cut(s) 271
BpuEI CTTGAG 2 cut(s) 27, 1251
BpuMI CCSGG 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 5, 731
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 7 cut(s) 273, 476, 784, 785, 1057, 1058, 1289
Bse1I ACTGG 3 cut(s) 169, 366, 1229
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 2 cut(s) 156, 891
BseDI CCNNGG 2 cut(s) 5, 731
BseGI GGATG 3 cut(s) 115, 397, 463
BseLI CCNNNNNNNGG 7 cut(s) 273, 476, 784, 785, 1057, 1058, 1289
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 3 cut(s) 599, 1110, 1229
BseNI ACTGG 3 cut(s) 169, 366, 1229
BseRI GAGGAG 1 cut(s) 1365
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 2 cut(s) 1142, 1193
BshFI GGCC 2 cut(s) 987, 1272
BshNI GGYRCC 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 1024
BsiSI CCGG 2 cut(s) 267, 713
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 7 cut(s) 273, 476, 784, 785, 1057, 1058, 1289
BsmAI GTCTC 4 cut(s) 441, 580, 598, 604
BsmFI GGGAC 1 cut(s) 1159
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 987, 1272
Bsp1286I GDGCHC 2 cut(s) 1024, 1200
Bsp143I GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
Bsp19I CCATGG 1 cut(s) 731
BspACI CCGC 2 cut(s) 270, 978
BspANI GGCC 2 cut(s) 987, 1272
BspCNI CTCAG 3 cut(s) 600, 1111, 1230
BspLI GGNNCC 4 cut(s) 399, 729, 1199, 1393
BspMI ACCTGC 1 cut(s) 971
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 4 cut(s) 95, 618, 1386, 1399
BspT107I GGYRCC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 169, 366, 1229
BssECI CCNNGG 2 cut(s) 5, 731
BssMI GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
BssT1I CCWWGG 2 cut(s) 5, 731
Bst2UI CCWGG 2 cut(s) 156, 891
Bst4CI ACNGT 4 cut(s) 185, 345, 1073, 1137
BstC8I GCNNGC 2 cut(s) 195, 989
BstDEI CTNAG 4 cut(s) 226, 608, 1119, 1238
BstDSI CCRYGG 1 cut(s) 731
BstF5I GGATG 3 cut(s) 115, 397, 463
BstKTI GATC 8 cut(s) 90, 105, 436, 626, 793, 1309, 1394, 1475
BstMAI GTCTC 4 cut(s) 441, 580, 598, 604
BstMBI GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
BstMWI GCNNNNNNNGC 2 cut(s) 194, 1190
BstNI CCWGG 2 cut(s) 156, 891
BstNSI RCATGY 2 cut(s) 419, 1289
BstSCI CCNGG 3 cut(s) 154, 265, 889
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 4 cut(s) 24, 54, 176, 1470
BstX2I RGATCY 2 cut(s) 623, 1391
BstYI RGATCY 2 cut(s) 623, 1391
BsuRI GGCC 2 cut(s) 987, 1272
BtgI CCRYGG 1 cut(s) 731
BtgZI GCGATG 1 cut(s) 684
BtrI CACGTC 1 cut(s) 859
BtsCI GGATG 3 cut(s) 115, 397, 463
BtsIMutI CAGTG 1 cut(s) 1236
BveI ACCTGC 1 cut(s) 971
Cac8I GCNNGC 2 cut(s) 195, 989
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 306
Csp6I GTAC 6 cut(s) 32, 365, 910, 949, 1074, 1099
CviJI RGCY 9 cut(s) 230, 251, 281, 560, 987, 1198, 1242, 1272, 1400
CviKI_1 RGCY 9 cut(s) 230, 251, 281, 560, 987, 1198, 1242, 1272, 1400
CviQI GTAC 6 cut(s) 32, 365, 910, 949, 1074, 1099
DdeI CTNAG 4 cut(s) 226, 608, 1119, 1238
DpnI GATC 8 cut(s) 89, 104, 435, 625, 792, 1308, 1393, 1474
DpnII GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
DraI TTTAAA 1 cut(s) 1438
Eco130I CCWWGG 2 cut(s) 5, 731
Eco24I GRGCYC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 1167
EcoRII CCWGG 2 cut(s) 154, 889
EcoT14I CCWWGG 2 cut(s) 5, 731
EcoT22I ATGCAT 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 2 cut(s) 5, 731
FalI AAGNNNNNCTT 2 cut(s) 1434, 1466
FaqI GGGAC 1 cut(s) 1159
FauI CCCGC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 882
FbaI TGATCA 1 cut(s) 790
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 3 cut(s) 122, 404, 470
FriOI GRGCYC 1 cut(s) 1200
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 4 cut(s) 194, 1077, 1149, 1164
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 2 cut(s) 1146, 1197
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 2 cut(s) 987, 1272
HapII CCGG 2 cut(s) 267, 713
HgaI GACGC 1 cut(s) 306
HincII GTYRAC 2 cut(s) 1005, 1365
HindII GTYRAC 2 cut(s) 1005, 1365
HinfI GANTC 5 cut(s) 214, 298, 371, 920, 1361
HpaI GTTAAC 1 cut(s) 1005
HpaII CCGG 2 cut(s) 267, 713
HphI GGTGA 3 cut(s) 800, 905, 1415
Hpy166II GTNNAC 8 cut(s) 341, 463, 680, 820, 856, 1005, 1297, 1365
Hpy188I TCNGA 6 cut(s) 120, 547, 966, 1011, 1110, 1360
Hpy188III TCNNGA 4 cut(s) 44, 243, 288, 1347
Hpy8I GTNNAC 8 cut(s) 341, 463, 680, 820, 856, 1005, 1297, 1365
Hpy99I CGWCG 1 cut(s) 851
HpyCH4III ACNGT 4 cut(s) 185, 345, 1073, 1137
HpyCH4IV ACGT 2 cut(s) 25, 858
HpyCH4V TGCA 9 cut(s) 59, 113, 134, 188, 254, 380, 647, 720, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 1190
HpyF3I CTNAG 4 cut(s) 226, 608, 1119, 1238
HpySE526I ACGT 2 cut(s) 25, 858
Ksp22I TGATCA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 1005
Kzo9I GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
LmnI GCTCC 2 cut(s) 1027, 1203
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 6 cut(s) 46, 100, 245, 304, 793, 1105
MaeI CTAG 4 cut(s) 194, 1077, 1149, 1164
MaeII ACGT 2 cut(s) 25, 858
MaeIII GTNAC 1 cut(s) 1067
MalI GATC 8 cut(s) 89, 104, 435, 625, 792, 1308, 1393, 1474
MboI GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 2 cut(s) 623, 1391
MhlI GDGCHC 2 cut(s) 1024, 1200
MlyI GAGTC 2 cut(s) 914, 1370
MmeI TCCRAC 1 cut(s) 1338
MnlI CCTC 6 cut(s) 267, 388, 527, 571, 1310, 1343
Mph1103I ATGCAT 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 7 cut(s) 72, 96, 294, 1004, 1037, 1383, 1437
MslI CAYNNNNRTG 6 cut(s) 72, 104, 325, 414, 798, 1290
MspI CCGG 2 cut(s) 267, 713
MspR9I CCNGG 3 cut(s) 156, 267, 891
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 2 cut(s) 156, 891
MwoI GCNNNNNNNGC 2 cut(s) 194, 1190
NciI CCSGG 1 cut(s) 267
NcoI CCATGG 1 cut(s) 731
NdeI CATATG 1 cut(s) 882
NdeII GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
NheI GCTAGC 1 cut(s) 193
NlaIV GGNNCC 4 cut(s) 399, 729, 1199, 1393
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 2 cut(s) 419, 1289
PaqCI CACCTGC 1 cut(s) 971
PciI ACATGT 2 cut(s) 415, 1285
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 855
PctI GAATGC 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 214, 298, 371
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 914, 1369
PpsI GAGTC 2 cut(s) 914, 1369
PscI ACATGT 2 cut(s) 415, 1285
Psp1406I AACGTT 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 154, 889
PspFI CCCAGC 2 cut(s) 1142, 1193
PspGI CCWGG 2 cut(s) 154, 889
PspN4I GGNNCC 4 cut(s) 399, 729, 1199, 1393
PspPI GGNCC 1 cut(s) 152
PsrI GAACNNNNNNTAC 2 cut(s) 15, 47
PsuI RGATCY 2 cut(s) 623, 1391
RsaI GTAC 6 cut(s) 33, 366, 911, 950, 1075, 1100
RsaNI GTAC 6 cut(s) 32, 365, 910, 949, 1074, 1099
RseI CAYNNNNRTG 6 cut(s) 72, 104, 325, 414, 798, 1290
SaqAI TTAA 7 cut(s) 72, 96, 294, 1004, 1037, 1383, 1437
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 8 cut(s) 87, 102, 433, 623, 790, 1306, 1391, 1472
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 2 cut(s) 914, 1370
ScrFI CCNGG 3 cut(s) 156, 267, 891
SduI GDGCHC 2 cut(s) 1024, 1200
SfaNI GCATC 6 cut(s) 46, 100, 245, 304, 793, 1105
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 6 cut(s) 72, 104, 325, 414, 798, 1290
SmlI CTYRAG 2 cut(s) 42, 1266
SmoI CTYRAG 2 cut(s) 42, 1266
SsiI CCGC 2 cut(s) 270, 978
SspI AATATT 1 cut(s) 1045
SspMI CTAG 4 cut(s) 194, 1077, 1149, 1164
StyD4I CCNGG 3 cut(s) 154, 265, 889
StyI CCWWGG 2 cut(s) 5, 731
TaaI ACNGT 4 cut(s) 185, 345, 1073, 1137
TaiI ACGT 2 cut(s) 28, 861
TaqI TCGA 4 cut(s) 374, 412, 436, 1346
TatI WGTACW 1 cut(s) 909
TfiI GAWTC 3 cut(s) 214, 298, 371
Tru1I TTAA 7 cut(s) 72, 96, 294, 1004, 1037, 1383, 1437
Tru9I TTAA 7 cut(s) 72, 96, 294, 1004, 1037, 1383, 1437
TscAI CASTG 1 cut(s) 1236
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 227, 783, 882, 1442, 1470
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 1236
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 3 cut(s) 771, 943, 1167
XceI RCATGY 2 cut(s) 419, 1289
XcmI CCANNNNNNNNNTGG 1 cut(s) 1375
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 4 cut(s) 194, 1077, 1149, 1164
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.