Rh7BG310700

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
29962777 .. 29969826
7050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG310700.1

Sequence Viewer

Length: 4647 bp
ATGGCATCAAACAATCGAAAGCTGAAGGGAAAAAGATACTTAAGAATGAATGATGGACCAAATGATAATGATCAACAAAATGTGCAGAATGCATTGGATGGTCACACTACTGCTACCTTTTTTGATAACAATATCAATCGTCGAATCAAATCAAGAAGATGGATAGAAGTGTCTGAAGCGGTGGTTGAGGATAGCCGGGTAAAGCAACACAATGATGATGGTATCAATGTAATACAACATCGAGATAAGCGAGTTAGAAATAATCGAGAGACGTCAAATGTGACAATGAAGCGAACTACTGTTACTGAGGCTAATTCGAATGGTAATGGTCAGGGTGGAACTGGCGAACATTTACATTCATTCGGTCAAGCAAGCTATCAAAGCACTAGACAAGGTTCAATCATTAGATATGAAGATGCAGGCGACAATATTTATGTTTGTGATTACTGTGATGCACTGTTTTGGCTTGAAGAGGCAATTAAACAAACATCGACGAAAGTGTCTCCTATCTATACAAATTGTTGCAAAAAAGGGAAAATTAAACTTCCACATGCTAAACCAACTCCGAATTTTCTTAGAACATTATTAGATCCAAATAACGGTTCGGAAAGTAAACTTTTTAGGGAAAATATTCGAATTTATAATTCAATGTTTTCGTTTACATCAATGGGAGCAATAATTGATCGAAAAATAAATACTGGATTAGGTCCGTACGTATTTAAAATCAGTGGTCAAGTACATCATTTAATGGGTTCTATATTGCCATCTGAGGGAGAATTTCCTAAATATGCACAATTATATATATATGATACTCAAAATGAGATTTATAATCGTATTAATGCTATTGATCCTACCCATATGAATAACAACATCAAACCATATATAGTTGAAGGACTTATTAAGATGTTCGATGAAATTAATGAATTAGTTAAACAATTTCGAACGATAAGAGATAAATTTGAAAATCAGTGTTTACCTTTATTTACTGTGAATGTACTTGATTGTTTACGTACTGATAGTAAACAATATGAAAGACCAACATCTGAGGAAATTAGTGGTCTCATTGTGGGCGATATTGGAGAACATAATTCAGAGAGAGACATAATTATTGAATCAAATAATAGACAATTGCAACGAGTTTCGAAAATACATTCAAAATATATGTCATTACAATATCCGATTCTTTTTCCGTATGGTGAAGATGGATATAAACCAAATTTATTGATGCACAAAACATCTACAAATTCCCAACAAAAAAGAGAGAGAATATCAATGCGAAGTTATATTACGTATCAAATTCAAGACAGACGTAACGTAGAAAATACTTTATTACAGGGTGGACGATTATTTCAACAATTTTTAGTTGATGCTTATGCAATTGTTGAGGAAGATCGTTTAGATTGGATAAGGAAAAATCAAAAAAATTTCCGAAATGAAATTCTTAAAGAAATGTATACTGCATCTTCATCTGGAATTCATAAAGGTCATGACTTAGGACAAAAAATTATTTTACCAAGTTCTCATACTGGAAGTCCTAGAGATATGATTAATAATTATCAAGATGCTATGGCAATTTGCAGACAATATGGCAATCCTGATTTATTTATAACTTTTACTTGCAATGTTAAATGGATAGAAATACAAAGATATTTTAAAAATGATCCTAAATCTAAAATTGAAGACAGGCCTGATATAATTTCGAGAATATTTAACATAAAATTACAAAATATGATTACATATATTAAATCTGGGGAACCTTTTGGACAAGTTGAGGCAGATGTTTGCACAATAGAATTTCAAAAAAGAGGACTTCCTCATGCTCATATGTTGTTTTGGTTAAAAAGAGATTATAAATGTTATACAGCAGCAGATATAGACTCTATTATTTCAGCTGAATTACCAGATAAAAATGTTAATCCAGAACTTTTTGATATTGTAAGTCAATTTATGATTCATGGGCCATGTGGACAAATTAATCCAAAAAGCCCTTGCATGAAAGATGGAAAATGCTCTAAATTCTTTCCAAAACCATATAACACAAAAACTATATTCGAAGCTAATTCACCACCAACATATAAACGTATCAATGATGACACAAAATTCGTCGAAAAAAATGGCGTTCATGTTGGTAATAATTTTGTTGTACCATATAATTCAAACTTATTATTGAGATACAATGCTCATATTAATGTTGAATTATGTTCCCAATCTATGTTAATTAAATATTTATTCAAATATATTAATAAAGGTCCAGATAGAGCTCGAATTTTGTTACAAGAAAACTTAAATGATGAAATTCAAACTTATCTTAATTGTCGTTATCTAACTCCTCATGAATCTATTTGGAGATTGTTTGAATATCTAATTCATTCTAAGCATCCTGCTGTACAACGTTTACAAATACATCTACCGTTAGAACAAAATGTTATTTTTAATGAATCTGAATCTCTTGAATCAATCATAGAACGTAAAAGTACAGAAGATACTACATTAACCGGATGGTTTCAAGCAAATAAAATTTACCCAGAGGCACGTGAATTAACTTATGTAGAATTTCCAACTAAGTTTGTTTGGCATGATCGCACAAAATGTTGGGCACCAAGAAAACGATATGAAACAATTGGACGAATAACATATATACATCCTACAAAAGGCGAACTATATTTTATGAGAATGTTATTAAATATTCAAAAAGGTTGTAGTGATTTCAATTCAATAAAGACCGTTAATGAGATTACATACCCTTCTTATCAAGAAGCCTGTCAAGCCTTGGGGTTATTAGGAGATGATAAAGAATGGATTGAAGCATTAACAAATTCTTCATATATTGCAACGGCTTCTGAAATACGCCAACTTTTTGTTACAATAATCTTATTTTGCGATGTTGCAAGTCCTCAAACATTATTTGATTTACATTGGTCAAATATGTGTGATGATATTTTATATAAAGCTAGATTAGAAACTCAAAATCCAAATTTGACCTTACCAGAATCAGAACTGAAGAACACATTGTTATTTGAATTAGAACACCTATTTAATATGTCATCAAGTTCATTAAAAGATCATCAATTACCAATGCCTGATAAAAATAAAATATTAGAATTGAAAAATAAATTATTAAAAGAAGAATTAGATTATAACTGTCGAGAATTAAAACATTTACATACAAATTTAGTTGCTCAGTTAAATACTTGTCAAAAAATTGTTTATGATGAAGTAATTGAAGGGATTGAAAAAAAAACATGCAACGCTTTTTTTGTTCATGGTCATGGAGGAACTGGCAAAACTTTTTTATGGCATACAATAATAAGTAAATTAAGATCTGAAGGAAAAATTGTTTTAGCTGTTGCATCATCAGGAATTGCTTCAATATTACTTCCAAATGGTAGAACCGCTCATTCTAGATTTAAAATACCTATTACAATAAATAATTTATCAATATGTCCGATAAAGAAAGGTACTCATCTTGCAAAATTAATTGATAGAGCAGAACTAATTATTTGGGACGAAGCTCCAATGTGTCATAAACATTGTTTTGAGTCATTAGATAAATCTTTACGAGATATTTTATCAGATTCAAATAATATACAAAAAGATAAACCATTCGGTGGTAAACCCATTTTATTAGGTGGTGATTTTAGACAAATTTTACCTGTTATCACCGGAGGAACTAAAGAACAAATAATTGAAGCTTCATTAAACTACTCATACCTTTGGCAATCATTTAAAATATTTCATTTAACAGAAAATATGAGATTATCAAAAAAAAATTTAACCGATGAGGATAGAAAAAATATTTCAGCTTTTGCAAATTGGCTATTACAAATTGGAGAAGGTAAAATACAATCTATAAATTATGAAAATGATATAGATACATCATGGGTTGAAATTCCAAACGATATACTTATTGATAATTATATAGATCCAATAAAAGCAATTTTTCTAGCAACTTATCAAAATTTCAATGAAAATTACAACAAATTTGATTATTTAAGAGAACGTGCAATAGTTACACCACGAAATACTACAGTAACAGAAATAAACAATTATGCTATAAATTTATTGCCAGGTAATGTGAGTACTTACCTAAGCTCAGATACTATTGTTCAAAATTCAAAAAATCATGAAAATATGGATGTTTTATATCCAACAGAATTCTTAAATAAATTGGAATTTCCTGGATTACCATCGCATAAATTAATTTTGAAGATCGGAATGCCTATTATGTTATTAAGAAATTTAAATCAACGATCTGGATTATGTAATGGTACAAGATTAATAATAACAGCATTATTTGATAGATTAATAGAAGCAAAAATATTAACAGGAACAAATATAAATCAAAAATTTTTTATACCTAGAATTGTTCTTACAGCTACTGAAAATAAGTGGCCATTCATTTTTAAAAGACGACAATTTCCAGTTAGACCATGTTATGCTATGACAATTAATAAAAGTCAAGGTCAATCTTTAAATCAAGTTGGCATATATTTACCTGAACCTGTTTTTACTCACGGACAATTATATGTTGCACTTTCAAGAGTTACATCAAGAAATGGTTTAAAAATTTTAATAAATAATAGTAATAATATACCAAATAAATACACTAAAAACATAGTGTACAAAGATGTGTTACTAAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

1548

Amino Acids

178.76

Weight (kDa)

8.74

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helitron_like_N PF14214 428 - 610 5.4e-55 Helitron helicase-like domain at N-terminus
PIF1 PF05970 1061 - 1284 4.7e-93 PIF1-like helicase
Pif1_2B_dom PF21530 1385 - 1431 2.6e-21 DNA helicase Pif1, 2B domain
Herpes_Helicase PF02689 1479 - 1530 4.5e-06 Helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 6 cut(s) 642, 828, 1607, 1851, 3138, 4645
AasI GACNNNNNNGTC 1 cut(s) 499
AatII GACGTC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 2596
AccB7I CCANNNNNTGG 1 cut(s) 3608
AccBSI CCGCTC 1 cut(s) 3395
AccI GTMKAC 1 cut(s) 1454
AciI CCGC 2 cut(s) 179, 3393
AclI AACGTT 1 cut(s) 2392
AclWI GGATC 4 cut(s) 584, 842, 1655, 3917
AcoI YGGCCR 1 cut(s) 4391
AcuI CTGAAG 4 cut(s) 44, 195, 3020, 3345
AcvI CACGTG 1 cut(s) 2534
AcyI GRCGYC 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 599, 770, 2651, 3608
AflII CTTAAG 1 cut(s) 40
AjnI CCWGG 2 cut(s) 4066, 4177
AjuI GAANNNNNNNTTGG 2 cut(s) 586, 618
Alw21I GWGCWC 1 cut(s) 2263
Alw26I GTCTC 4 cut(s) 263, 507, 1064, 1092
AlwI GGATC 4 cut(s) 584, 842, 1655, 3917
AlwNI CAGNNNCTG 1 cut(s) 4379
AoxI GGCC 3 cut(s) 1685, 1958, 4391
ApeKI GCWGC 1 cut(s) 1865
ArsI GACNNNNNNTTYG 4 cut(s) 1148, 1180, 2084, 2116
Asp700I GAANNNNTTC 2 cut(s) 630, 3364
AspS9I GGNCC 4 cut(s) 56, 707, 1958, 2249
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 4 cut(s) 1208, 2055, 3644, 3652
AsuII TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
AvaII GGWCC 3 cut(s) 56, 707, 2249
BaeGI GKGCMC 1 cut(s) 2599
BaeI ACNNNNGTAYC 2 cut(s) 4089, 4122
BalI TGGCCA 1 cut(s) 4393
BanI GGYRCC 1 cut(s) 2596
BanII GRGCYC 1 cut(s) 2263
BarI GAAGNNNNNNTAC 4 cut(s) 1270, 1302, 3825, 3857
BbrPI CACGTG 1 cut(s) 2534
BbsI GAAGAC 1 cut(s) 1686
Bbv12I GWGCWC 1 cut(s) 2263
BbvI GCAGC 1 cut(s) 1877
BccI CCATC 9 cut(s) 47, 92, 153, 212, 772, 1196, 1994, 2493, 4195
BceAI ACGGC 1 cut(s) 2850
BciT130I CCWGG 2 cut(s) 4068, 4179
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 4 cut(s) 263, 507, 1064, 1092
BfaI CTAG 6 cut(s) 387, 1536, 2952, 3402, 3944, 4359
BfmI CTRYAG 1 cut(s) 4026
BfrI CTTAAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 3320
BisI GCNGC 1 cut(s) 1866
BlsI GCNGC 1 cut(s) 1867
BmcAI AGTACT 1 cut(s) 4081
Bme1390I CCNGG 3 cut(s) 197, 4068, 4179
Bme18I GGWCC 3 cut(s) 56, 707, 2249
BmgT120I GGNCC 4 cut(s) 56, 707, 1958, 2249
BmiI GGNNCC 2 cut(s) 1755, 2598
BmrFI CCNGG 3 cut(s) 197, 4068, 4179
BmsI GCATC 9 cut(s) 14, 406, 442, 1215, 1357, 1469, 1552, 2386, 3359
BpiI GAAGAC 1 cut(s) 1686
Bpu10I CCTNAGC 1 cut(s) 4088
Bpu14I TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
BpuMI CCSGG 1 cut(s) 197
BsaAI YACGTR 4 cut(s) 715, 1010, 1290, 2534
BsaBI GATNNNNATC 2 cut(s) 69, 4186
BsaHI GRCGYC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 1 cut(s) 2769
BsaWI WCCGGW 2 cut(s) 2495, 3662
Bsc4I CCNNNNNNNGG 4 cut(s) 599, 770, 2651, 3608
Bse1I ACTGG 5 cut(s) 346, 703, 1531, 3283, 4421
Bse3DI GCAATG 1 cut(s) 1627
Bse8I GATNNNNATC 2 cut(s) 69, 4186
BseBI CCWGG 2 cut(s) 4068, 4179
BseDI CCNNGG 1 cut(s) 2769
BseGI GGATG 5 cut(s) 103, 2377, 2504, 2641, 4141
BseJI GATNNNNATC 2 cut(s) 69, 4186
BseLI CCNNNNNNNGG 4 cut(s) 599, 770, 2651, 3608
BseMI GCAATG 1 cut(s) 1627
BseMII CTCAG 5 cut(s) 297, 759, 1035, 3194, 4107
BseNI ACTGG 5 cut(s) 346, 703, 1531, 3283, 4421
BseRI GAGGAG 1 cut(s) 2319
BseSI GKGCMC 1 cut(s) 2599
BseXI GCAGC 1 cut(s) 1877
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 3 cut(s) 1687, 1960, 4393
BshNI GGYRCC 1 cut(s) 2596
BsiHKAI GWGCWC 1 cut(s) 2263
BsiSI CCGG 3 cut(s) 196, 2496, 3663
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 3518
BslI CCNNNNNNNGG 4 cut(s) 599, 770, 2651, 3608
BsmAI GTCTC 4 cut(s) 263, 507, 1064, 1092
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 3518
BsmI GAATGC 2 cut(s) 94, 4221
BsnI GGCC 3 cut(s) 1687, 1960, 4393
Bso31I GGTCTC 1 cut(s) 1064
Bsp119I TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
Bsp1286I GDGCHC 2 cut(s) 2263, 2599
Bsp1407I TGTACA 2 cut(s) 2386, 4620
BspACI CCGC 2 cut(s) 179, 3393
BspANI GGCC 3 cut(s) 1687, 1960, 4393
BspCNI CTCAG 5 cut(s) 298, 760, 1036, 3193, 4106
BspHI TCATGA 3 cut(s) 1486, 2332, 4123
BspLI GGNNCC 2 cut(s) 1755, 2598
BspPI GGATC 4 cut(s) 584, 842, 1655, 3917
BspT104I TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
BspT107I GGYRCC 1 cut(s) 2596
BspTI CTTAAG 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 1064
BsrBI CCGCTC 1 cut(s) 3395
BsrDI GCAATG 1 cut(s) 1627
BsrGI TGTACA 2 cut(s) 2386, 4620
BsrI ACTGG 5 cut(s) 346, 703, 1531, 3283, 4421
BssECI CCNNGG 1 cut(s) 2769
BssNAI GTATAC 1 cut(s) 1455
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 2769
Bst1107I GTATAC 1 cut(s) 1455
Bst2UI CCWGG 2 cut(s) 4068, 4179
Bst4CI ACNGT 9 cut(s) 301, 449, 459, 602, 988, 2412, 2725, 3143, 4030
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 1 cut(s) 272
BstAFI CTTAAG 1 cut(s) 40
BstAUI TGTACA 2 cut(s) 2386, 4620
BstBAI YACGTR 4 cut(s) 715, 1010, 1290, 2534
BstBI TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
BstC8I GCNNGC 2 cut(s) 373, 421
BstENI CCTNNNNNAGG 1 cut(s) 2649
BstF5I GGATG 5 cut(s) 103, 2377, 2504, 2641, 4141
BstMAI GTCTC 4 cut(s) 263, 507, 1064, 1092
BstMWI GCNNNNNNNGC 2 cut(s) 381, 2765
BstNI CCWGG 2 cut(s) 4068, 4179
BstNSI RCATGY 2 cut(s) 554, 3246
BstSCI CCNGG 3 cut(s) 195, 4066, 4177
BstSFI CTRYAG 1 cut(s) 4026
BstSLI GKGCMC 1 cut(s) 2599
BstSNI TACGTA 3 cut(s) 715, 1010, 1290
BstV1I GCAGC 1 cut(s) 1877
BstV2I GAAGAC 1 cut(s) 1686
BstX2I RGATCY 3 cut(s) 589, 3320, 3922
BstYI RGATCY 3 cut(s) 589, 3320, 3922
BstZ17I GTATAC 1 cut(s) 1455
BsuRI GGCC 3 cut(s) 1687, 1960, 4393
BtgZI GCGATG 2 cut(s) 2895, 4173
BtsCI GGATG 5 cut(s) 103, 2377, 2504, 2641, 4141
BtsIMutI CAGTG 3 cut(s) 455, 733, 974
Cac8I GCNNGC 2 cut(s) 373, 421
CaiI CAGNNNCTG 1 cut(s) 4379
CciI TCATGA 3 cut(s) 1486, 2332, 4123
Cfr13I GGNCC 4 cut(s) 56, 707, 1958, 2249
DraI TTTAAA 8 cut(s) 721, 1654, 3409, 3727, 4242, 4405, 4473, 4563
DrdI GACNNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 4391
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 2261
Eco105I TACGTA 3 cut(s) 715, 1010, 1290
Eco130I CCWWGG 1 cut(s) 2769
Eco147I AGGCCT 1 cut(s) 1687
Eco24I GRGCYC 1 cut(s) 2263
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 3 cut(s) 56, 707, 2249
Eco53kI GAGCTC 1 cut(s) 2261
Eco57I CTGAAG 4 cut(s) 44, 195, 3020, 3345
Eco72I CACGTG 1 cut(s) 2534
EcoICRI GAGCTC 1 cut(s) 2261
EcoNI CCTNNNNNAGG 1 cut(s) 2649
EcoRI GAATTC 2 cut(s) 1473, 4154
EcoRII CCWGG 2 cut(s) 4066, 4177
EcoT14I CCWWGG 1 cut(s) 2769
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 2263
ErhI CCWWGG 1 cut(s) 2769
Esp3I CGTCTC 1 cut(s) 263
FaqI GGGAC 1 cut(s) 3518
FauNDI CATATG 2 cut(s) 858, 1824
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 1454
Fnu4HI GCNGC 1 cut(s) 1866
FokI GGATG 5 cut(s) 110, 2364, 2511, 2628, 4148
FriOI GRGCYC 1 cut(s) 2263
Fsp4HI GCNGC 1 cut(s) 1866
FspBI CTAG 6 cut(s) 387, 1536, 2952, 3402, 3944, 4359
GluI GCNGC 1 cut(s) 1866
HaeIII GGCC 3 cut(s) 1687, 1960, 4393
HapII CCGG 3 cut(s) 196, 2496, 3663
Hin1I GRCGYC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 3690
HpaII CCGG 3 cut(s) 196, 2496, 3663
HphI GGTGA 4 cut(s) 1208, 2055, 3644, 3652
Hpy99I CGWCG 3 cut(s) 144, 496, 2108
HpyAV CCTTC 6 cut(s) 19, 884, 2754, 3218, 3320, 3827
HpyCH4III ACNGT 9 cut(s) 301, 449, 459, 602, 988, 2412, 2725, 3143, 4030
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 2765
Hsp92I GRCGYC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 70
LmnI GCTCC 2 cut(s) 671, 3517
Lsp1109I GCAGC 1 cut(s) 1877
LweI GCATC 9 cut(s) 14, 406, 442, 1215, 1357, 1469, 1552, 2386, 3359
MaeI CTAG 6 cut(s) 387, 1536, 2952, 3402, 3944, 4359
MbiI CCGCTC 1 cut(s) 3395
MfeI CAATTG 3 cut(s) 1127, 1377, 2619
MflI RGATCY 3 cut(s) 589, 3320, 3922
MhlI GDGCHC 2 cut(s) 2263, 2599
MlsI TGGCCA 1 cut(s) 4393
MluNI TGGCCA 1 cut(s) 4393
MlyI GAGTC 2 cut(s) 1871, 3548
MmeI TCCRAC 2 cut(s) 2582, 4172
Mox20I TGGCCA 1 cut(s) 4393
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 2 cut(s) 630, 3364
MscI TGGCCA 1 cut(s) 4393
MslI CAYNNNNRTG 3 cut(s) 213, 2187, 3267
Msp20I TGGCCA 1 cut(s) 4393
MspA1I CMGCKG 1 cut(s) 1892
MspCI CTTAAG 1 cut(s) 40
MspI CCGG 3 cut(s) 196, 2496, 3663
MspR9I CCNGG 3 cut(s) 197, 4068, 4179
MunI CAATTG 3 cut(s) 1127, 1377, 2619
Mva1269I GAATGC 2 cut(s) 94, 4221
MvaI CCWGG 2 cut(s) 4068, 4179
MwoI GCNNNNNNNGC 2 cut(s) 381, 2765
NciI CCSGG 1 cut(s) 197
NdeI CATATG 2 cut(s) 858, 1824
NlaIV GGNNCC 2 cut(s) 1755, 2598
NmuCI GTSAC 2 cut(s) 101, 280
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 2 cut(s) 554, 3246
NspV TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
PacI TTAATTAA 1 cut(s) 2220
PagI TCATGA 3 cut(s) 1486, 2332, 4123
PceI AGGCCT 1 cut(s) 1687
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PctI GAATGC 2 cut(s) 94, 4221
PdmI GAANNNNTTC 2 cut(s) 630, 3364
Pfl23II CGTACG 1 cut(s) 711
PflMI CCANNNNNTGG 1 cut(s) 3608
PfoI TCCNGGA 1 cut(s) 4177
PkrI GCNGC 1 cut(s) 1867
PleI GAGTC 2 cut(s) 1871, 3547
PmaCI CACGTG 1 cut(s) 2534
PmlI CACGTG 1 cut(s) 2534
PpsI GAGTC 2 cut(s) 1871, 3547
Ppu21I YACGTR 4 cut(s) 715, 1010, 1290, 2534
PsiI TTATAA 6 cut(s) 642, 828, 1607, 1851, 3138, 4645
Psp124BI GAGCTC 1 cut(s) 2263
Psp1406I AACGTT 1 cut(s) 2392
Psp6I CCWGG 2 cut(s) 4066, 4177
PspCI CACGTG 1 cut(s) 2534
PspGI CCWGG 2 cut(s) 4066, 4177
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 2 cut(s) 1755, 2598
PspPI GGNCC 4 cut(s) 56, 707, 1958, 2249
PsrI GAACNNNNNNTAC 2 cut(s) 286, 318
PstNI CAGNNNCTG 1 cut(s) 4379
PsuI RGATCY 3 cut(s) 589, 3320, 3922
PvuII CAGCTG 1 cut(s) 1892
RseI CAYNNNNRTG 3 cut(s) 213, 2187, 3267
SacI GAGCTC 1 cut(s) 2263
SatI GCNGC 1 cut(s) 1866
Sau96I GGNCC 4 cut(s) 56, 707, 1958, 2249
ScaI AGTACT 1 cut(s) 4081
SchI GAGTC 2 cut(s) 1871, 3548
ScrFI CCNGG 3 cut(s) 197, 4068, 4179
SduI GDGCHC 2 cut(s) 2263, 2599
SfaNI GCATC 9 cut(s) 14, 406, 442, 1215, 1357, 1469, 1552, 2386, 3359
SfcI CTRYAG 1 cut(s) 4026
SfuI TTCGAA 5 cut(s) 317, 634, 940, 1142, 2052
SinI GGWCC 3 cut(s) 56, 707, 2249
SmiI ATTTAAAT 1 cut(s) 4242
SmiMI CAYNNNNRTG 3 cut(s) 213, 2187, 3267
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SnaBI TACGTA 3 cut(s) 715, 1010, 1290
SseBI AGGCCT 1 cut(s) 1687
SsiI CCGC 2 cut(s) 179, 3393
SspMI CTAG 6 cut(s) 387, 1536, 2952, 3402, 3944, 4359
SstI GAGCTC 1 cut(s) 2263
StuI AGGCCT 1 cut(s) 1687
StyD4I CCNGG 3 cut(s) 195, 4066, 4177
StyI CCWWGG 1 cut(s) 2769
SwaI ATTTAAAT 1 cut(s) 4242
TaaI ACNGT 9 cut(s) 301, 449, 459, 602, 988, 2412, 2725, 3143, 4030
TaqII GACCGA 1 cut(s) 353
TatI WGTACW 6 cut(s) 736, 994, 2386, 2474, 4079, 4620
TscAI CASTG 3 cut(s) 462, 733, 974
TseFI GTSAC 2 cut(s) 101, 280
TseI GCWGC 1 cut(s) 1865
Tsp45I GTSAC 2 cut(s) 101, 280
TspGWI ACGGA 3 cut(s) 699, 1179, 4530
TspRI CASTG 3 cut(s) 462, 733, 974
Van91I CCANNNNNTGG 1 cut(s) 3608
Vha464I CTTAAG 1 cut(s) 40
VpaK11BI GGWCC 3 cut(s) 56, 707, 2249
XagI CCTNNNNNAGG 1 cut(s) 2649
XbaI TCTAGA 1 cut(s) 3401
XceI RCATGY 2 cut(s) 554, 3246
XmiI GTMKAC 1 cut(s) 1454
XmnI GAANNNNTTC 2 cut(s) 630, 3364
XspI CTAG 6 cut(s) 387, 1536, 2952, 3402, 3944, 4359
ZraI GACGTC 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 4081
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.