RchiOBHm_Chr5g0013161

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000080
Physical Location & Seq
Forward (+)
8915114 .. 8919883
4770 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29370

Sequence Viewer

Length: 3489 bp
ATGTCTAACTCAGGTTCACATACTAGACCGAGTCAGGTTCACAGAGACGAATCAGGGGCAACCCAGACTGTGGATGCTTCAAGAACAGGCACGACACAAATGGATCATAGAGAGCGTGCGCGTGCTAGCCATCAGGAATGGAGACAATCGATGAGTTCTACACAACATGAAGCCTATTTGGCACGGCGGCGAGCTCATGCTAGGGGAAAGCGACTAGCCGTGGAAAATGTAAGTGACCATGGACAAGAGGCGGGCCCAAGTAATAGGAATAGGCTAGCTCCAGTACACTCCGACAACGAGAGCATAAGTTCAAGAGTTTCATCCTATTCCCAAAACCATGACCAAGATGCTACAAGGGTGCGCTTGACCCACATAAGACAATTAGCCCGTTCGACTACGTCTCGACCGAGCAATGTGGTTATTCAGAATTCTGTGCCTTACGAGATGCCTAATGTCACAATGAATAATCACGATGAGGACCACAATAACAACGAGCATATGGTGAATAATCATGAGGATCAGAACAACAACACTGAGCTAGAGAATAACCCACAGGATCAGCGCAGCAGCAGTGTTGACCCAGTGCGGCGTACAAGGAGAGCAGTAGTAAATTCAAACTGCGCTAGAGATTTTAATGAGGGATGGGGTGTCCCATTTTGTCGATTGCCTGCACTAAGAACATGTCCATACTGCAATGCACGGTTATTTCATCGAGAGACCTTCAATTTGTGTTGTTCGAAAGGAAATATTGTTCTGCCTCTAATACCCTCTCCGCCAGAGATGATCCAGCTCTTTTCTGACCAAACAGATGTGGGTAGAAAATTCAGACAAAATATCCGAGCCTATAATAATGTGTTTGCGTTCACTTCAATGGGTGTGCATGTTGATGAATCCATTAATCTTCGAGGTCGTGGAATTTATACTTTTCGTGCACAAGGTTCTATATATCATAAGATTGGTGGGCTTTTACCAAGTGAAGGGGCGAGACCACGATATCTACAAGCTTACATATATGACACCGAGCATGAACTTGACAATCGATTGTCTGAAAGTGTAGTTTTAGACAGGGCACTGGTTGAAAAGATACAACAGATATTGAATCACTATAATCCATTTGTCCATCAATTTCGAAGCCTCGGACAGCGCCAAGACTTGCCCAATTGCAGGCTCATCATAAGAGAGCAGCCTTCTAATCAACGTCAGTATTGTTTACCATCTGCATCACAAGTTGCTGCTATTATAGTAGGAGGGGGCGACATCAATCCGAATGGAAGAGATTTAATTGTCCAAACAATTAGTGGAAGACTCTGGAATGTTAAAGACTCGGTCGGATATTACGACCCCATGCAGTATCCTTTGTTATTACCTTATGGAACATATGGGTGGGATATTAATAGTCATGATGAGAATGGAAGACCTATGTCATGTTGCGACTATTATGCATATATGTTACAGATGCGCCTAGGTGATGAAAATCCTCTACTTCGAGGCGGACGGCTCTTACAACAGTATGTTGTAGATAATTACGTGAAAATTGAATCCCAAAAACTCAGATGGCTTCGCAGTAACCAAGATACAATTAGGAAAGAATTTTATCAAGGACTTCAAGACTCTTTTATTGCAGGGGAAAACAATGCAGGTAACGTCGGTCATAGGACAATTCTGCCATCATCATTTGTTGGAAGTCCACGTGATATGTACCAACGGTACCAAGATGCGATGGCTTTGGTTCAAAAGTATGGCAGACCAGATTTGTTTATCACTATGACGTGTAACCCGAATTGGGAAGAAATTAAAAGTGAGCTACTCCCTGGACAAACATCACAAGATCGTCCAGATTTAGAGGTCAGGGTATTTCGTTCAAAACTTGAGCAGCTAAAAGAAGACATCATCACCAAAGGGGTATTGGGAAGAGTTATTGCTCATGCTTTTGTCGTTGAATTTCAGAAACGGGGCCTACCACATGTACACATGCTGGTCATGTTGGATGAAAATGATAAGCTTAATAACCCTGAAGATTATGACCGCATTGTTAGAGCAGAAATACCAGATAAAGATGAAGAGCCACAACTTTATGATCTGGTGTTGAAACATATGATTCACGGTCCATGTGGAACCTTAAACCAACAGTCTTCATGTATGAAGAATGGGAGATGCAATAAAAGTTATCCAAAATCATTTGTAAATTTCACTGTGCAAGGAAACGATGCATATCCTATATATCGAAGACGAGCAAGTCGCTTACCAGTCCCTCTACGTAGATCTGGAGACACAATGGTGGATAATAGTTGGGTTGTTCCTTATAACCCGTGGTTGTTGCTACGGTATGATTGTCACATCAATGTTGAAATATGTGGGAGCATAAAGAGTGTCAAATACTTATATAAGTATGTCTACAAAGGTCCTGATAGAGTTGCAGTTCAAGTGCAATCTGACCCAGAGTTCGATGAAATAAGACAATTTGTCGATGCAAGGTGGGTTTGTGCACCAGAGGCTTTATGGAGGATATTTAAATTTGTAATGAACAGAATATATCCAACAGTCGACAGATTACAAATACATCTTCCAAACATGCAACAAATCAGATTCGATGCAAATGAGACTGTAGAAGACATTCTAGCAGATGAGCATGCACAGAAGTCTATGCTTACTGAATATTTCACCATGAACCGTATGGATCCGGAAGCAAGACGATATCTGTATCGAGAATTCCCTCAATACTATAGGTGGGATAGTAAGCAAAAAGCTTGGGTGAAAAGAAGGAACAACTACAAGGTAATTGGAAGAATATACAGTGTTTCACCCTCTGAAGGTGAGAAATTTTACCTACGTGTCCTTCTCAATCATATAAGAGGACCGAGATCATTTCGTGATTTGCTTACTATTAATGGAGTTCTGCAAACTACTTTTAAGGAAGCGGCAGAGAAACGAGGTTTGCTGGAAGATGACAATAACATCCGACAATGTCTGTTAGAGGCCTCTGCAATTAGAATGCCATCAGCTTTGAGAAGATTATTCGTCACAATTTTGGTGTATAGTCAACCAACTGGTGTTCGAAGATTGTGGGATGAATTTTATCCTTTCATGATTGAAGATTATTCTTCTTCAAGTGATATTGTCGATATTTCTGTCAGAAACAGGCTACTTCGAGATCTAAATAGAATGCTAGAACAATTTAATAAGGGCACTGGAGAATTTGATCTGCCTGAAATGACAAGTGAGCCAGAAGATAGTCTAGGAATACCGAGATGTATTGAAGACGAAATTTCTATAAATATCCCGCAAGAAGATATTGATGCAATTGACCACCTTAACAACGACCAAATGATTGCATTCAACACCATAATGGCCGCAGTTGAGGGAGGAGAAAGTGCATTATTTTTTATCGATGGTCCTGGAGTTGAGAAGAATGAATCATATAGTCTTAGCCACAGCATCATCTGGAATTGCTGCAAATTTATTGTCCGGCGGGAGGACAGCTCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

1162

Amino Acids

134.38

Weight (kDa)

6.92

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helitron_like_N PF14214 479 - 660 8e-63 Helitron helicase-like domain at N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2304
AasI GACNNNNNNGTC 1 cut(s) 2235
Acc36I ACCTGC 1 cut(s) 1628
Acc65I GGTACC 1 cut(s) 1707
AccB1I GGYRCC 1 cut(s) 1707
AccB7I CCANNNNNTGG 1 cut(s) 70
AccI GTMKAC 2 cut(s) 2394, 2544
AccII CGCG 1 cut(s) 121
AccIII TCCGGA 1 cut(s) 2680
AclWI GGATC 6 cut(s) 111, 525, 564, 778, 2672, 2685
AcoI YGGCCR 1 cut(s) 3348
AcuI CTGAAG 2 cut(s) 2034, 2829
AcvI CACGTG 1 cut(s) 1691
AfaI GTAC 5 cut(s) 285, 592, 1700, 1709, 1968
AfiI CCNNNNNNNGG 6 cut(s) 70, 977, 1164, 1783, 2810, 3472
AflIII ACRYGT 4 cut(s) 680, 1769, 1963, 2830
AhdI GACNNNNNGTC 1 cut(s) 2462
AjiI CACGTC 1 cut(s) 1770
AjnI CCWGG 2 cut(s) 1810, 3394
AleI CACNNNNGTG 1 cut(s) 2276
AloI GAACNNNNNNTCC 2 cut(s) 735, 767
Alw21I GWGCWC 3 cut(s) 196, 934, 2488
Alw26I GTCTC 7 cut(s) 39, 136, 405, 710, 979, 2262, 2594
Alw44I GTGCAC 2 cut(s) 930, 2484
AlwI GGATC 6 cut(s) 111, 525, 564, 778, 2672, 2685
Aor13HI TCCGGA 1 cut(s) 2680
AoxI GGCC 4 cut(s) 253, 1954, 2976, 3348
ApaI GGGCCC 1 cut(s) 257
ApaLI GTGCAC 2 cut(s) 930, 2484
ApeKI GCWGC 6 cut(s) 564, 567, 1183, 1232, 1873, 3450
ArsI GACNNNNNNTTYG 6 cut(s) 709, 741, 2426, 2458, 3447, 3479
AseI ATTAAT 3 cut(s) 897, 1392, 2886
Asp700I GAANNNNTTC 1 cut(s) 2613
Asp718I GGTACC 1 cut(s) 1707
AspA2I CCTAGG 1 cut(s) 1462
AspLEI GCGC 6 cut(s) 121, 363, 564, 623, 1146, 1461
AspS9I GGNCC 8 cut(s) 253, 254, 478, 1954, 2105, 2402, 2855, 3392
AsuHPI GGTGA 7 cut(s) 514, 1478, 1885, 2653, 2764, 2793, 2825
AsuII TTCGAA 3 cut(s) 737, 1129, 3055
AsuNHI GCTAGC 2 cut(s) 125, 274
AvaII GGWCC 5 cut(s) 478, 2105, 2402, 2855, 3392
AvrII CCTAGG 1 cut(s) 1462
BaeGI GKGCMC 5 cut(s) 257, 934, 1072, 2488, 3188
BamHI GGATCC 1 cut(s) 2677
BanI GGYRCC 1 cut(s) 1707
BanII GRGCYC 2 cut(s) 196, 257
BbrPI CACGTG 1 cut(s) 1691
BbsI GAAGAC 7 cut(s) 1309, 1420, 1890, 2124, 2233, 2616, 3264
Bbv12I GWGCWC 3 cut(s) 196, 934, 2488
BbvI GCAGC 6 cut(s) 576, 579, 1195, 1219, 1885, 3437
BccI CCATC 9 cut(s) 138, 636, 1128, 1222, 1548, 1675, 1714, 3004, 3383
BceAI ACGGC 3 cut(s) 200, 203, 1511
BcgI CGANNNNNNTGC 2 cut(s) 1421, 1455
BciT130I CCWGG 2 cut(s) 1812, 3396
BciVI GTATCC 1 cut(s) 1362
BcoDI GTCTC 7 cut(s) 39, 136, 405, 710, 979, 2262, 2594
BfmI CTRYAG 2 cut(s) 2604, 2722
BfoI RGCGCY 1 cut(s) 1147
BfuAI ACCTGC 1 cut(s) 1628
BfuI GTATCC 1 cut(s) 1362
BglI GCCNNNNNGGC 1 cut(s) 179
BglII AGATCT 2 cut(s) 2261, 3151
BlnI CCTAGG 1 cut(s) 1462
Bme1390I CCNGG 2 cut(s) 1812, 3396
Bme18I GGWCC 5 cut(s) 478, 2105, 2402, 2855, 3392
BmeRI GACNNNNNGTC 1 cut(s) 2462
BmgBI CACGTC 1 cut(s) 1770
BmgT120I GGNCC 8 cut(s) 253, 254, 478, 1954, 2105, 2402, 2855, 3392
BmiI GGNNCC 5 cut(s) 255, 1709, 1955, 2116, 2679
BmrFI CCNGG 2 cut(s) 1812, 3396
BmrI ACTGGG 1 cut(s) 575
BmtI GCTAGC 2 cut(s) 129, 278
BmuI ACTGGG 1 cut(s) 575
BoxI GACNNNNGTC 1 cut(s) 1420
BpiI GAAGAC 7 cut(s) 1309, 1420, 1890, 2124, 2233, 2616, 3264
BplI GAGNNNNNCTC 1 cut(s) 3464
BpmI CTGGAG 4 cut(s) 264, 2286, 3210, 3417
Bpu14I TTCGAA 3 cut(s) 737, 1129, 3055
BpuEI CTTGAG 1 cut(s) 1889
Bsa29I ATCGAT 3 cut(s) 149, 1039, 3387
BsaAI YACGTR 4 cut(s) 1528, 1691, 2258, 2831
BsaBI GATNNNNATC 2 cut(s) 1473, 2211
BsaI GGTCTC 2 cut(s) 710, 979
BsaJI CCNNGG 6 cut(s) 219, 238, 1135, 1462, 1810, 2309
BsaWI WCCGGW 1 cut(s) 2680
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 977, 1164, 1783, 2810, 3472
Bse1I ACTGG 6 cut(s) 281, 581, 1077, 2246, 3052, 3193
Bse3DI GCAATG 2 cut(s) 418, 700
Bse8I GATNNNNATC 2 cut(s) 1473, 2211
BseAI TCCGGA 1 cut(s) 2680
BseBI CCWGG 2 cut(s) 1812, 3396
BseCI ATCGAT 3 cut(s) 149, 1039, 3387
BseDI CCNNGG 6 cut(s) 219, 238, 1135, 1462, 1810, 2309
BseGI GGATG 6 cut(s) 79, 320, 647, 1993, 2955, 3073
BseJI GATNNNNATC 2 cut(s) 1473, 2211
BseLI CCNNNNNNNGG 6 cut(s) 70, 977, 1164, 1783, 2810, 3472
BseMI GCAATG 2 cut(s) 418, 700
BseMII CTCAG 3 cut(s) 24, 525, 1564
BseNI ACTGG 6 cut(s) 281, 581, 1077, 2246, 3052, 3193
BseRI GAGGAG 1 cut(s) 3378
BseSI GKGCMC 5 cut(s) 257, 934, 1072, 2488, 3188
BseXI GCAGC 6 cut(s) 576, 579, 1195, 1219, 1885, 3437
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 2 cut(s) 407, 1329
BshFI GGCC 4 cut(s) 255, 1956, 2978, 3350
BshNI GGYRCC 1 cut(s) 1707
BshVI ATCGAT 3 cut(s) 149, 1039, 3387
BsiEI CGRYCG 2 cut(s) 407, 1329
BsiHKAI GWGCWC 3 cut(s) 196, 934, 2488
BsiSI CCGG 2 cut(s) 2681, 3466
BslFI GGGAC 2 cut(s) 635, 2234
BslI CCNNNNNNNGG 6 cut(s) 70, 977, 1164, 1783, 2810, 3472
BsmAI GTCTC 7 cut(s) 39, 136, 405, 710, 979, 2262, 2594
BsmBI CGTCTC 2 cut(s) 39, 405
BsmFI GGGAC 2 cut(s) 635, 2234
BsmI GAATGC 3 cut(s) 2997, 3168, 3332
BsnI GGCC 4 cut(s) 255, 1956, 2978, 3350
Bso31I GGTCTC 2 cut(s) 710, 979
Bsp119I TTCGAA 3 cut(s) 737, 1129, 3055
Bsp120I GGGCCC 1 cut(s) 253
Bsp1286I GDGCHC 6 cut(s) 196, 257, 934, 1072, 2488, 3188
Bsp13I TCCGGA 1 cut(s) 2680
Bsp1407I TGTACA 1 cut(s) 1966
Bsp19I CCATGG 1 cut(s) 238
BspANI GGCC 4 cut(s) 255, 1956, 2978, 3350
BspCNI CTCAG 3 cut(s) 23, 526, 1563
BspDI ATCGAT 3 cut(s) 149, 1039, 3387
BspEI TCCGGA 1 cut(s) 2680
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 3 cut(s) 511, 1399, 3084
BspLI GGNNCC 5 cut(s) 255, 1709, 1955, 2116, 2679
BspMI ACCTGC 1 cut(s) 1628
BspOI GCTAGC 2 cut(s) 129, 278
BspPI GGATC 6 cut(s) 111, 525, 564, 778, 2672, 2685
BspQI GCTCTTC 1 cut(s) 2055
BspT104I TTCGAA 3 cut(s) 737, 1129, 3055
BspT107I GGYRCC 1 cut(s) 1707
BspTNI GGTCTC 2 cut(s) 710, 979
BsrDI GCAATG 2 cut(s) 418, 700
BsrGI TGTACA 1 cut(s) 1966
BsrI ACTGG 6 cut(s) 281, 581, 1077, 2246, 3052, 3193
BssECI CCNNGG 6 cut(s) 219, 238, 1135, 1462, 1810, 2309
BssT1I CCWWGG 2 cut(s) 238, 1462
Bst2UI CCWGG 2 cut(s) 1812, 3396
Bst6I CTCTTC 3 cut(s) 1267, 1906, 2055
BstAUI TGTACA 1 cut(s) 1966
BstBAI YACGTR 4 cut(s) 1528, 1691, 2258, 2831
BstBI TTCGAA 3 cut(s) 737, 1129, 3055
BstC8I GCNNGC 9 cut(s) 117, 123, 127, 192, 253, 276, 669, 1166, 2631
BstDEI CTNAG 5 cut(s) 10, 534, 674, 1550, 3425
BstDSI CCRYGG 3 cut(s) 219, 238, 2309
BstF5I GGATG 6 cut(s) 79, 320, 647, 1993, 2955, 3073
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 1147
BstHHI GCGC 6 cut(s) 121, 363, 564, 623, 1146, 1461
BstMAI GTCTC 7 cut(s) 39, 136, 405, 710, 979, 2262, 2594
BstMCI CGRYCG 2 cut(s) 407, 1329
BstMWI GCNNNNNNNGC 2 cut(s) 179, 2492
BstNI CCWGG 2 cut(s) 1812, 3396
BstNSI RCATGY 6 cut(s) 684, 884, 1967, 1975, 2575, 2633
BstPAI GACNNNNGTC 1 cut(s) 1420
BstSCI CCNGG 2 cut(s) 1810, 3394
BstSFI CTRYAG 2 cut(s) 2604, 2722
BstSLI GKGCMC 5 cut(s) 257, 934, 1072, 2488, 3188
BstSNI TACGTA 1 cut(s) 2258
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 6 cut(s) 576, 579, 1195, 1219, 1885, 3437
BstV2I GAAGAC 7 cut(s) 1309, 1420, 1890, 2124, 2233, 2616, 3264
BstX2I RGATCY 3 cut(s) 2261, 2677, 3151
BstYI RGATCY 3 cut(s) 2261, 2677, 3151
Bsu15I ATCGAT 3 cut(s) 149, 1039, 3387
BsuI GTATCC 1 cut(s) 1362
BsuRI GGCC 4 cut(s) 255, 1956, 2978, 3350
BsuTUI ATCGAT 3 cut(s) 149, 1039, 3387
BtgI CCRYGG 3 cut(s) 219, 238, 2309
BtgZI GCGATG 1 cut(s) 1733
BtrI CACGTC 1 cut(s) 1770
BtsCI GGATG 6 cut(s) 79, 320, 647, 1993, 2955, 3073
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 7 cut(s) 531, 577, 588, 1070, 2190, 2800, 3186
BveI ACCTGC 1 cut(s) 1628
Cac8I GCNNGC 9 cut(s) 117, 123, 127, 192, 253, 276, 669, 1166, 2631
CciI TCATGA 3 cut(s) 511, 1399, 3084
CfoI GCGC 6 cut(s) 121, 363, 564, 623, 1146, 1461
Cfr13I GGNCC 8 cut(s) 253, 254, 478, 1954, 2105, 2402, 2855, 3392
ClaI ATCGAT 3 cut(s) 149, 1039, 3387
Csp6I GTAC 5 cut(s) 284, 591, 1699, 1708, 1967
CviQI GTAC 5 cut(s) 284, 591, 1699, 1708, 1967
DdeI CTNAG 5 cut(s) 10, 534, 674, 1550, 3425
DraI TTTAAA 1 cut(s) 2512
DrdI GACNNNNNNGTC 1 cut(s) 2235
DriI GACNNNNNGTC 1 cut(s) 2462
DseDI GACNNNNNNGTC 1 cut(s) 2235
EaeI YGGCCR 1 cut(s) 3348
Eam1104I CTCTTC 3 cut(s) 1267, 1906, 2055
Eam1105I GACNNNNNGTC 1 cut(s) 2462
EarI CTCTTC 3 cut(s) 1267, 1906, 2055
EciI GGCGGA 2 cut(s) 762, 1506
Ecl136II GAGCTC 1 cut(s) 194
Eco105I TACGTA 1 cut(s) 2258
Eco130I CCWWGG 2 cut(s) 238, 1462
Eco147I AGGCCT 1 cut(s) 2978
Eco24I GRGCYC 2 cut(s) 196, 257
Eco31I GGTCTC 2 cut(s) 710, 979
Eco32I GATATC 2 cut(s) 995, 2696
Eco47I GGWCC 5 cut(s) 478, 2105, 2402, 2855, 3392
Eco53kI GAGCTC 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 2034, 2829
Eco72I CACGTG 1 cut(s) 1691
EcoICRI GAGCTC 1 cut(s) 194
EcoO109I RGGNCCY 2 cut(s) 1954, 2402
EcoRI GAATTC 2 cut(s) 427, 2708
EcoRII CCWGG 2 cut(s) 1810, 3394
EcoRV GATATC 2 cut(s) 995, 2696
EcoT14I CCWWGG 2 cut(s) 238, 1462
EcoT22I ATGCAT 2 cut(s) 1444, 2212
EcoT38I GRGCYC 2 cut(s) 196, 257
ErhI CCWWGG 2 cut(s) 238, 1462
Esp3I CGTCTC 2 cut(s) 39, 405
FaqI GGGAC 2 cut(s) 635, 2234
FauI CCCGC 3 cut(s) 244, 3288, 3462
FauNDI CATATG 3 cut(s) 498, 1378, 2094
FblI GTMKAC 2 cut(s) 2394, 2544
FokI GGATG 6 cut(s) 86, 307, 654, 2000, 2942, 3080
FriOI GRGCYC 2 cut(s) 196, 257
GlaI GCGC 6 cut(s) 120, 362, 563, 622, 1145, 1460
GsuI CTGGAG 4 cut(s) 264, 2286, 3210, 3417
HaeII RGCGCY 1 cut(s) 1147
HaeIII GGCC 4 cut(s) 255, 1956, 2978, 3350
HapII CCGG 2 cut(s) 2681, 3466
HhaI GCGC 6 cut(s) 121, 363, 564, 623, 1146, 1461
Hin6I GCGC 6 cut(s) 119, 361, 562, 621, 1144, 1459
HinP1I GCGC 6 cut(s) 119, 361, 562, 621, 1144, 1459
HincII GTYRAC 3 cut(s) 577, 2545, 3041
HindII GTYRAC 3 cut(s) 577, 2545, 3041
HindIII AAGCTT 3 cut(s) 1002, 2000, 2745
HpaII CCGG 2 cut(s) 2681, 3466
HphI GGTGA 7 cut(s) 514, 1478, 1885, 2653, 2764, 2793, 2825
Hpy99I CGWCG 1 cut(s) 1649
HpyAV CCTTC 6 cut(s) 730, 971, 1197, 2754, 2804, 2846
HpyCH4IV ACGT 8 cut(s) 398, 1198, 1527, 1644, 1690, 1769, 2257, 2830
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 2492
HpyF3I CTNAG 5 cut(s) 10, 534, 674, 1550, 3425
HpySE526I ACGT 8 cut(s) 398, 1198, 1527, 1644, 1690, 1769, 2257, 2830
HspAI GCGC 6 cut(s) 119, 361, 562, 621, 1144, 1459
Kpn2I TCCGGA 1 cut(s) 2680
KpnI GGTACC 1 cut(s) 1711
LguI GCTCTTC 1 cut(s) 2055
LmnI GCTCC 2 cut(s) 283, 2358
Lsp1109I GCAGC 6 cut(s) 576, 579, 1195, 1219, 1885, 3437
MaeII ACGT 8 cut(s) 398, 1198, 1527, 1644, 1690, 1769, 2257, 2830
MaeIII GTNAC 8 cut(s) 233, 454, 1449, 1565, 1640, 1772, 2333, 3019
MfeI CAATTG 2 cut(s) 1159, 3300
MflI RGATCY 3 cut(s) 2261, 2677, 3151
MhlI GDGCHC 6 cut(s) 196, 257, 934, 1072, 2488, 3188
MlyI GAGTC 4 cut(s) 40, 1299, 1316, 1604
MmeI TCCRAC 6 cut(s) 315, 1309, 1660, 1965, 2561, 2983
Mph1103I ATGCAT 2 cut(s) 1444, 2212
MroI TCCGGA 1 cut(s) 2680
MroXI GAANNNNTTC 1 cut(s) 2613
MslI CAYNNNNRTG 6 cut(s) 869, 885, 1381, 2276, 2340, 3344
MspI CCGG 2 cut(s) 2681, 3466
MspR9I CCNGG 2 cut(s) 1812, 3396
MunI CAATTG 2 cut(s) 1159, 3300
Mva1269I GAATGC 3 cut(s) 2997, 3168, 3332
MvaI CCWGG 2 cut(s) 1812, 3396
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 179, 2492
NcoI CCATGG 1 cut(s) 238
NdeI CATATG 3 cut(s) 498, 1378, 2094
NheI GCTAGC 2 cut(s) 125, 274
NlaIV GGNNCC 5 cut(s) 255, 1709, 1955, 2116, 2679
NmuCI GTSAC 4 cut(s) 233, 454, 2333, 3019
NsiI ATGCAT 2 cut(s) 1444, 2212
NspI RCATGY 6 cut(s) 684, 884, 1967, 1975, 2575, 2633
NspV TTCGAA 3 cut(s) 737, 1129, 3055
OliI CACNNNNGTG 1 cut(s) 2276
PaeI GCATGC 1 cut(s) 2633
PagI TCATGA 3 cut(s) 511, 1399, 3084
PceI AGGCCT 1 cut(s) 2978
PciI ACATGT 2 cut(s) 680, 1963
PciSI GCTCTTC 1 cut(s) 2055
PcsI WCGNNNNNNNCGW 3 cut(s) 404, 1335, 1775
PctI GAATGC 3 cut(s) 2997, 3168, 3332
PdmI GAANNNNTTC 1 cut(s) 2613
PfeI GAWTC 7 cut(s) 50, 890, 1099, 1538, 2098, 2586, 3413
PflFI GACNNNGTC 4 cut(s) 30, 397, 1325, 2964
PflMI CCANNNNNTGG 1 cut(s) 70
PfoI TCCNGGA 1 cut(s) 3394
PleI GAGTC 4 cut(s) 39, 1299, 1316, 1604
PmaCI CACGTG 1 cut(s) 1691
PmlI CACGTG 1 cut(s) 1691
PpsI GAGTC 4 cut(s) 39, 1299, 1316, 1604
Ppu21I YACGTR 4 cut(s) 1528, 1691, 2258, 2831
PpuMI RGGWCCY 1 cut(s) 2402
PscI ACATGT 2 cut(s) 680, 1963
PshAI GACNNNNGTC 1 cut(s) 1420
PshBI ATTAAT 3 cut(s) 897, 1392, 2886
PsiI TTATAA 1 cut(s) 2304
Psp124BI GAGCTC 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 2402
Psp6I CCWGG 2 cut(s) 1810, 3394
PspCI CACGTG 1 cut(s) 1691
PspGI CCWGG 2 cut(s) 1810, 3394
PspN4I GGNNCC 5 cut(s) 255, 1709, 1955, 2116, 2679
PspOMI GGGCCC 1 cut(s) 253
PspPI GGNCC 8 cut(s) 253, 254, 478, 1954, 2105, 2402, 2855, 3392
PspPPI RGGWCCY 1 cut(s) 2402
PsuI RGATCY 3 cut(s) 2261, 2677, 3151
PsyI GACNNNGTC 4 cut(s) 30, 397, 1325, 2964
RsaI GTAC 5 cut(s) 285, 592, 1700, 1709, 1968
RsaNI GTAC 5 cut(s) 284, 591, 1699, 1708, 1967
RseI CAYNNNNRTG 6 cut(s) 869, 885, 1381, 2276, 2340, 3344
SacI GAGCTC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 2543
SapI GCTCTTC 1 cut(s) 2055
Sau96I GGNCC 8 cut(s) 253, 254, 478, 1954, 2105, 2402, 2855, 3392
SchI GAGTC 4 cut(s) 40, 1299, 1316, 1604
ScrFI CCNGG 2 cut(s) 1812, 3396
SduI GDGCHC 6 cut(s) 196, 257, 934, 1072, 2488, 3188
SfcI CTRYAG 2 cut(s) 2604, 2722
SfuI TTCGAA 3 cut(s) 737, 1129, 3055
SinI GGWCC 5 cut(s) 478, 2105, 2402, 2855, 3392
SmiI ATTTAAAT 1 cut(s) 2512
SmiMI CAYNNNNRTG 6 cut(s) 869, 885, 1381, 2276, 2340, 3344
SmlI CTYRAG 1 cut(s) 1868
SmoI CTYRAG 1 cut(s) 1868
SnaBI TACGTA 1 cut(s) 2258
SphI GCATGC 1 cut(s) 2633
SseBI AGGCCT 1 cut(s) 2978
SspI AATATT 2 cut(s) 748, 2657
SstI GAGCTC 1 cut(s) 196
StuI AGGCCT 1 cut(s) 2978
StyD4I CCNGG 2 cut(s) 1810, 3394
StyI CCWWGG 2 cut(s) 238, 1462
SwaI ATTTAAAT 1 cut(s) 2512
TaiI ACGT 8 cut(s) 401, 1201, 1530, 1647, 1693, 1772, 2260, 2833
TaqII GACCGA 5 cut(s) 43, 421, 1315, 1637, 2872
TatI WGTACW 2 cut(s) 283, 1966
TauI GCSGC 4 cut(s) 190, 589, 2921, 3353
TfiI GAWTC 7 cut(s) 50, 890, 1099, 1538, 2098, 2586, 3413
TscAI CASTG 7 cut(s) 538, 577, 588, 1077, 2197, 2800, 3193
TseFI GTSAC 4 cut(s) 233, 454, 2333, 3019
TseI GCWGC 6 cut(s) 564, 567, 1183, 1232, 1873, 3450
Tsp45I GTSAC 4 cut(s) 233, 454, 2333, 3019
TspRI CASTG 7 cut(s) 538, 577, 588, 1077, 2197, 2800, 3193
Tth111I GACNNNGTC 4 cut(s) 30, 397, 1325, 2964
Van91I CCANNNNNTGG 1 cut(s) 70
VneI GTGCAC 2 cut(s) 930, 2484
VpaK11BI GGWCC 5 cut(s) 478, 2105, 2402, 2855, 3392
VspI ATTAAT 3 cut(s) 897, 1392, 2886
XceI RCATGY 6 cut(s) 684, 884, 1967, 1975, 2575, 2633
XcmI CCANNNNNNNNNTGG 4 cut(s) 1295, 1903, 2496, 2671
XmaJI CCTAGG 1 cut(s) 1462
XmiI GTMKAC 2 cut(s) 2394, 2544
XmnI GAANNNNTTC 1 cut(s) 2613
Zsp2I ATGCAT 2 cut(s) 1444, 2212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.