Rw5G015240

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
18831406 .. 18835317
3912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015240.1

Sequence Viewer

Length: 2385 bp
ATGGCTTTGGTTCAAAAGTATGGCAGACCAGATTTGTTTATCACTATGACGTGTAACCCGAATTGGGAAGAAATTAAAAGTGAGCTACTCCCTGGACAAACATCACAAGATCGTCCAGATTTAGAGGTCAGGGTATTTCATTCAAAACTTGAGCAACTAAAAGAAGACATCATTACCAAAGGGGTATTGGGAAGAGTTATTGCTCATGCTTACGTCGTTGAATTTCAGAAACGGGGCCTACCACATGTACACATGCTGGTCATGTTGGATGACAATGATAAGCTTAATAACCCTGAAGATTATGACCGCATTGTTAGAGCAGAAATACCAGATAAAGATGAAGAGCCTCAACTTTATGATCTGGTGTTGAAACATATGATTCACGGTCCATGTGGAACCTTAAACCAACAGTCTTCATGTATGAAAAATGGGAGATGCAATAAAAATTATCCAAAATCATTTGCAAATTTCACTGTGCAAGGAAACGATGCATATCCTATATATCGAAGACGAGCAAGTCGCTTACCAGTCCCTCTACGTAGATCTGGAGACACAATGGTGGATAATAGTTGGGTTATTCCTTATAACCCGTGGTTGTTGCTACGGTATGATTGTCACATCAATGTTGAAATTTGTGGGAGCATAAAGAGTGTCAAATACTTATATAAGTATGTCTACAAAGGTCCTGATAGAGTTGTAGTTCAAGTGCAATCTGACCCGGAGTTCGATGAAATAAGACAATTTGTCGATGCAAGGTGGGTTTGTGCACCAGAGGCTTTATGGAGGATATTTAAATTTGTAATGAACAGAATGTATCCAACAGTCGACAGATTACAAATACATCTTCCAAACATGAAACAAATCAGATTCAATGCAAATGAGACTGTTGAAGACATTCTAGCAGATGAGCATGCACAGAAGTCTATGCTTACAGAATATTTCACCATGAACTCTTGGGTGAAAAGAAGGAACAACTACAAGGTAATTGGAAGAATATATAGTGTTTCACCCTCCGAAGGTGAGAAATTTTACCTACGTGTCCTTCTCAATCATATAAGAGGACCGAGATCATTTCATGATTTGCTTACTATTAATGGAGTTCTGCAAACTACTTTTAAGAAAGTGGCAGAGAAACTAGGTTTGCTGGAAGATGACAATAGCATCCGACAACGTTTGTTAGAAGCCTCTACAATTAGAATGCCATCAGCTTTAAGAAGATTATTCGTCACAATTTTGGTGTATAGTCAACCAACTGGTGTTCGAAGATTGTGGGATGAATTTTATCCTTTCATGATTGAAGATTATTCTTCTTCAAGTGATATTGTCGATATTTCTGTCAGAAACAGGCTACTTCGAGATCTAAACAGAATGCTAGAACAATTTAATAAGGGCACTGGAGAATTTGATCTGCCTGAAATGACAAGTGAGCCAGAAGATAGTCTAGGAATACTGAGATGTATTGAAGACGAAATTTCTATAAATATCCCGCAAGAAGATATTGATGCAATTGACCACCTTAACAATGACCAAATGATTGCATTCAACACCATAATGGCCGCAGTTAAGGGAAGAGAAAGTGCATTATTTTTTATCGATGGTCCTGGAGGTACTGGGAAGACGTACTTATATCATACATTGCTAGCAAAGTTGAGAAGAATGAATCATATAGTCTTAGCCACAGCATCATCTGGAATTACTGCAAATTTATTGTCCGGCGAGAGGACATCTCACTCTAGATTCAAGATTCCACTCAATGTAGATGTATCATCCATGTGTTCCATAAATTCCCCTGCAATTATTTGGGATGAGGCACCTATGACACATCAACATGTGTTTGAAGCACTTGATCGAACATTTCGAGACATAATGGATGTCGAATTACCGTTTGAATTTCTACTTCATGTTGGCGATGGGAGTGAACAAGTCATTGACAACGAAATGATGAGATTACCAGAATGCATGGTGGTTCCATGGGAAAGTGAAGAAATTACATTGTACTCATTTGACTCTGTTGAAGATGACATGAGAAATTTGTACCAACTAGAGTTTCTGAACTCAATAATTGTAGGTGGGCTGCCACCCCACAAGTTAACTTTGAAAGTAGGTGCTCCAATCATGCTTTTAAGGAATATTGACCCTAAATTGGGATTGTGTAATAGTACTAGATTGTTGTGTCGTGGTTCGTACCAAAATCTGATTGATGCTGAGATACTAACAGGACAGTTTGCTGGGACTAGAGTTTTTCTACCTAGAATTCCTTTGAAAAGTGCAGAAAATGCTGGGCTACCATTTCAACTAACAAGAAAGCAATTTCCAGTCAAACTGAGCTTCTCTTTGACCATAAACAAATCTCAAGTTCAAAGCTGGATATTCCTAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

794

Amino Acids

91.46

Weight (kDa)

6.14

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helitron_like_N PF14214 1 - 87 2.8e-35 Helitron helicase-like domain at N-terminus
PIF1 PF05970 506 - 625 1.2e-36 PIF1-like helicase
Pif1_2B_dom PF21530 682 - 724 1.4e-18 DNA helicase Pif1, 2B domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AasI GACNNNNNNGTC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 1810
AccI GTMKAC 2 cut(s) 675, 825
AciI CCGC 3 cut(s) 307, 1487, 1557
AclI AACGTT 1 cut(s) 1171
AcoI YGGCCR 1 cut(s) 1554
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 7 cut(s) 249, 1609, 1622, 1997, 2036, 2161, 2186
AfiI CCNNNNNNNGG 5 cut(s) 64, 1016, 1719, 2143, 2144
AflIII ACRYGT 4 cut(s) 50, 244, 1036, 1828
AhdI GACNNNNNGTC 1 cut(s) 743
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 91, 1600
AjuI GAANNNNNNNTTGG 2 cut(s) 2031, 2063
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 5 cut(s) 85, 283, 1208, 2328, 2364
AluI AGCT 5 cut(s) 85, 283, 1208, 2328, 2364
Alw21I GWGCWC 2 cut(s) 769, 2110
Alw26I GTCTC 3 cut(s) 543, 875, 1854
Alw44I GTGCAC 1 cut(s) 765
AoxI GGCC 2 cut(s) 235, 1554
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 1 cut(s) 2074
ArsI GACNNNNNNTTYG 4 cut(s) 707, 739, 1694, 1726
AseI ATTAAT 1 cut(s) 1092
Asp700I GAANNNNTTC 1 cut(s) 894
AspS9I GGNCC 5 cut(s) 235, 386, 683, 1061, 1598
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 4 cut(s) 934, 970, 999, 1031
AsuII TTCGAA 1 cut(s) 1261
AsuNHI GCTAGC 1 cut(s) 1639
AvaII GGWCC 4 cut(s) 386, 683, 1061, 1598
BaeGI GKGCMC 2 cut(s) 769, 1394
BanI GGYRCC 1 cut(s) 1810
BbsI GAAGAC 6 cut(s) 171, 405, 514, 897, 1470, 1622
Bbv12I GWGCWC 2 cut(s) 769, 2110
BbvI GCAGC 1 cut(s) 2061
BccI CCATC 3 cut(s) 1210, 1589, 1904
BciT130I CCWGG 2 cut(s) 93, 1602
BciVI GTATCC 1 cut(s) 825
BcnI CCSGG 1 cut(s) 719
BcoDI GTCTC 3 cut(s) 543, 875, 1854
BfuI GTATCC 1 cut(s) 825
BglII AGATCT 2 cut(s) 542, 1357
BisI GCNGC 2 cut(s) 1557, 2075
BlsI GCNGC 2 cut(s) 1558, 2076
BmcAI AGTACT 1 cut(s) 2161
Bme1390I CCNGG 3 cut(s) 93, 719, 1602
Bme18I GGWCC 4 cut(s) 386, 683, 1061, 1598
BmeRI GACNNNNNGTC 1 cut(s) 743
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 5 cut(s) 235, 386, 683, 1061, 1598
BmiI GGNNCC 4 cut(s) 236, 397, 1812, 1968
BmrFI CCNGG 3 cut(s) 93, 719, 1602
BmrI ACTGGG 1 cut(s) 1620
BmsI GCATC 7 cut(s) 425, 478, 739, 1170, 1492, 1691, 2191
BmtI GCTAGC 1 cut(s) 1643
BmuI ACTGGG 1 cut(s) 1620
BpiI GAAGAC 6 cut(s) 171, 405, 514, 897, 1470, 1622
BplI GAGNNNNNCTC 2 cut(s) 1711, 1743
BpmI CTGGAG 3 cut(s) 567, 1416, 1623
Bpu14I TTCGAA 1 cut(s) 1261
BpuEI CTTGAG 2 cut(s) 170, 2337
BpuMI CCSGG 1 cut(s) 719
Bsa29I ATCGAT 1 cut(s) 1593
BsaAI YACGTR 2 cut(s) 539, 1037
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 91, 590, 1970
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 1016, 1719, 2143, 2144
Bse1I ACTGG 5 cut(s) 527, 1258, 1399, 1615, 2315
Bse3DI GCAATG 1 cut(s) 1634
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 2 cut(s) 93, 1602
BseCI ATCGAT 1 cut(s) 1593
BseDI CCNNGG 3 cut(s) 91, 590, 1970
BseGI GGATG 6 cut(s) 274, 1161, 1279, 1766, 1810, 1876
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 5 cut(s) 64, 1016, 1719, 2143, 2144
BseMI GCAATG 1 cut(s) 1634
BseMII CTCAG 3 cut(s) 1442, 2196, 2315
BseNI ACTGG 5 cut(s) 527, 1258, 1399, 1615, 2315
BseSI GKGCMC 2 cut(s) 769, 1394
BseXI GCAGC 1 cut(s) 2061
BseYI CCCAGC 2 cut(s) 2228, 2279
BsgI GTGCAG 1 cut(s) 2289
BshFI GGCC 2 cut(s) 237, 1556
BshNI GGYRCC 1 cut(s) 1810
BshVI ATCGAT 1 cut(s) 1593
BsiHKAI GWGCWC 2 cut(s) 769, 2110
BsiSI CCGG 2 cut(s) 719, 1713
BslFI GGGAC 2 cut(s) 515, 2245
BslI CCNNNNNNNGG 5 cut(s) 64, 1016, 1719, 2143, 2144
BsmAI GTCTC 3 cut(s) 543, 875, 1854
BsmFI GGGAC 2 cut(s) 515, 2245
BsmI GAATGC 4 cut(s) 1203, 1374, 1538, 1961
BsnI GGCC 2 cut(s) 237, 1556
Bsp119I TTCGAA 1 cut(s) 1261
Bsp1286I GDGCHC 3 cut(s) 769, 1394, 2110
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
Bsp19I CCATGG 1 cut(s) 1970
BspACI CCGC 3 cut(s) 307, 1487, 1557
BspANI GGCC 2 cut(s) 237, 1556
BspCNI CTCAG 3 cut(s) 1443, 2197, 2316
BspDI ATCGAT 1 cut(s) 1593
BspHI TCATGA 2 cut(s) 1075, 1290
BspLI GGNNCC 4 cut(s) 236, 397, 1812, 1968
BspOI GCTAGC 1 cut(s) 1643
BspQI GCTCTTC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 1261
BspT107I GGYRCC 1 cut(s) 1810
BsrDI GCAATG 1 cut(s) 1634
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 5 cut(s) 527, 1258, 1399, 1615, 2315
BssECI CCNNGG 3 cut(s) 91, 590, 1970
BssMI GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
BssT1I CCWWGG 1 cut(s) 1970
Bst2UI CCWGG 2 cut(s) 93, 1602
Bst4CI ACNGT 8 cut(s) 386, 411, 475, 606, 823, 886, 1884, 2223
Bst6I CTCTTC 3 cut(s) 187, 336, 1564
BstAPI GCANNNNNTGC 1 cut(s) 2276
BstAUI TGTACA 1 cut(s) 247
BstBAI YACGTR 2 cut(s) 539, 1037
BstBI TTCGAA 1 cut(s) 1261
BstC8I GCNNGC 2 cut(s) 912, 1641
BstDEI CTNAG 4 cut(s) 1451, 1672, 2205, 2324
BstDSI CCRYGG 2 cut(s) 590, 1970
BstF5I GGATG 6 cut(s) 274, 1161, 1279, 1766, 1810, 1876
BstKTI GATC 7 cut(s) 112, 361, 545, 1070, 1360, 1408, 1849
BstMAI GTCTC 3 cut(s) 543, 875, 1854
BstMBI GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
BstMWI GCNNNNNNNGC 2 cut(s) 773, 2276
BstNI CCWGG 2 cut(s) 93, 1602
BstNSI RCATGY 4 cut(s) 248, 256, 914, 1832
BstSCI CCNGG 3 cut(s) 91, 717, 1600
BstSLI GKGCMC 2 cut(s) 769, 1394
BstSNI TACGTA 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 2061
BstV2I GAAGAC 6 cut(s) 171, 405, 514, 897, 1470, 1622
BstX2I RGATCY 2 cut(s) 542, 1357
BstYI RGATCY 2 cut(s) 542, 1357
Bsu15I ATCGAT 1 cut(s) 1593
BsuI GTATCC 1 cut(s) 825
BsuRI GGCC 2 cut(s) 237, 1556
BsuTUI ATCGAT 1 cut(s) 1593
BtgI CCRYGG 2 cut(s) 590, 1970
BtgZI GCGATG 1 cut(s) 1923
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 6 cut(s) 274, 1161, 1279, 1766, 1810, 1876
BtsIMutI CAGTG 2 cut(s) 471, 1392
Cac8I GCNNGC 2 cut(s) 912, 1641
CciI TCATGA 2 cut(s) 1075, 1290
Cfr13I GGNCC 5 cut(s) 235, 386, 683, 1061, 1598
ClaI ATCGAT 1 cut(s) 1593
Csp6I GTAC 7 cut(s) 248, 1608, 1621, 1996, 2035, 2160, 2185
CviQI GTAC 7 cut(s) 248, 1608, 1621, 1996, 2035, 2160, 2185
DdeI CTNAG 4 cut(s) 1451, 1672, 2205, 2324
DpnI GATC 7 cut(s) 111, 360, 544, 1069, 1359, 1407, 1848
DpnII GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
DraI TTTAAA 1 cut(s) 793
DrdI GACNNNNNNGTC 1 cut(s) 516
DriI GACNNNNNGTC 1 cut(s) 743
DseDI GACNNNNNNGTC 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 1554
Eam1104I CTCTTC 3 cut(s) 187, 336, 1564
Eam1105I GACNNNNNGTC 1 cut(s) 743
EarI CTCTTC 3 cut(s) 187, 336, 1564
Eco105I TACGTA 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 1970
Eco47I GGWCC 4 cut(s) 386, 683, 1061, 1598
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 2 cut(s) 235, 683
EcoRI GAATTC 1 cut(s) 2253
EcoRII CCWGG 2 cut(s) 91, 1600
EcoT14I CCWWGG 1 cut(s) 1970
EcoT22I ATGCAT 2 cut(s) 493, 1961
ErhI CCWWGG 1 cut(s) 1970
FalI AAGNNNNNCTT 2 cut(s) 1607, 1639
FaqI GGGAC 2 cut(s) 515, 2245
FauI CCCGC 1 cut(s) 1494
FauNDI CATATG 1 cut(s) 375
FblI GTMKAC 2 cut(s) 675, 825
Fnu4HI GCNGC 2 cut(s) 1557, 2075
FokI GGATG 6 cut(s) 281, 1148, 1286, 1753, 1817, 1883
Fsp4HI GCNGC 2 cut(s) 1557, 2075
GluI GCNGC 2 cut(s) 1557, 2075
GsaI CCCAGC 2 cut(s) 2232, 2283
GsuI CTGGAG 3 cut(s) 567, 1416, 1623
HaeIII GGCC 2 cut(s) 237, 1556
HapII CCGG 2 cut(s) 719, 1713
HincII GTYRAC 3 cut(s) 826, 1247, 2091
HindII GTYRAC 3 cut(s) 826, 1247, 2091
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 6 cut(s) 379, 867, 1660, 1737, 1744, 2006
HpaI GTTAAC 1 cut(s) 2091
HpaII CCGG 2 cut(s) 719, 1713
HphI GGTGA 4 cut(s) 934, 970, 999, 1031
Hpy166II GTNNAC 7 cut(s) 250, 676, 767, 826, 1247, 1919, 2091
Hpy188I TCNGA 8 cut(s) 228, 715, 866, 1015, 1166, 1340, 2052, 2196
Hpy8I GTNNAC 7 cut(s) 250, 676, 767, 826, 1247, 1919, 2091
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 960, 1010, 1052
HpyCH4III ACNGT 8 cut(s) 386, 411, 475, 606, 823, 886, 1884, 2223
HpyCH4IV ACGT 6 cut(s) 50, 213, 538, 1036, 1171, 1619
HpyF10VI GCNNNNNNNGC 2 cut(s) 773, 2276
HpyF3I CTNAG 4 cut(s) 1451, 1672, 2205, 2324
HpySE526I ACGT 6 cut(s) 50, 213, 538, 1036, 1171, 1619
KspAI GTTAAC 1 cut(s) 2091
Kzo9I GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 2 cut(s) 639, 2113
Lsp1109I GCAGC 1 cut(s) 2061
LweI GCATC 7 cut(s) 425, 478, 739, 1170, 1492, 1691, 2191
MaeII ACGT 6 cut(s) 50, 213, 538, 1036, 1171, 1619
MaeIII GTNAC 3 cut(s) 53, 614, 1225
MalI GATC 7 cut(s) 111, 360, 544, 1069, 1359, 1407, 1848
MboI GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
MfeI CAATTG 1 cut(s) 1506
MflI RGATCY 2 cut(s) 542, 1357
MhlI GDGCHC 3 cut(s) 769, 1394, 2110
MlyI GAGTC 1 cut(s) 2000
MmeI TCCRAC 3 cut(s) 246, 842, 1189
Mph1103I ATGCAT 2 cut(s) 493, 1961
MroXI GAANNNNTTC 1 cut(s) 894
MslI CAYNNNNRTG 5 cut(s) 557, 621, 1550, 1771, 1827
MspI CCGG 2 cut(s) 719, 1713
MspR9I CCNGG 3 cut(s) 93, 719, 1602
MunI CAATTG 1 cut(s) 1506
Mva1269I GAATGC 4 cut(s) 1203, 1374, 1538, 1961
MvaI CCWGG 2 cut(s) 93, 1602
MwoI GCNNNNNNNGC 2 cut(s) 773, 2276
NciI CCSGG 1 cut(s) 719
NcoI CCATGG 1 cut(s) 1970
NdeI CATATG 1 cut(s) 375
NdeII GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
NheI GCTAGC 1 cut(s) 1639
NlaIV GGNNCC 4 cut(s) 236, 397, 1812, 1968
NmuCI GTSAC 2 cut(s) 614, 1225
NsiI ATGCAT 2 cut(s) 493, 1961
NspI RCATGY 4 cut(s) 248, 256, 914, 1832
NspV TTCGAA 1 cut(s) 1261
OliI CACNNNNGTG 1 cut(s) 557
PaeI GCATGC 1 cut(s) 914
PagI TCATGA 2 cut(s) 1075, 1290
PciI ACATGT 2 cut(s) 244, 1828
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 1855
PctI GAATGC 4 cut(s) 1203, 1374, 1538, 1961
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 5 cut(s) 379, 867, 1660, 1737, 1744
PfoI TCCNGGA 1 cut(s) 1600
PkrI GCNGC 2 cut(s) 1558, 2076
PleI GAGTC 1 cut(s) 2000
PpsI GAGTC 1 cut(s) 2000
Ppu21I YACGTR 2 cut(s) 539, 1037
PpuMI RGGWCCY 1 cut(s) 683
PscI ACATGT 2 cut(s) 244, 1828
PshBI ATTAAT 1 cut(s) 1092
PsiI TTATAA 1 cut(s) 585
Psp1406I AACGTT 1 cut(s) 1171
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 91, 1600
PspFI CCCAGC 2 cut(s) 2228, 2279
PspGI CCWGG 2 cut(s) 91, 1600
PspN4I GGNNCC 4 cut(s) 236, 397, 1812, 1968
PspPI GGNCC 5 cut(s) 235, 386, 683, 1061, 1598
PspPPI RGGWCCY 1 cut(s) 683
PsuI RGATCY 2 cut(s) 542, 1357
RsaI GTAC 7 cut(s) 249, 1609, 1622, 1997, 2036, 2161, 2186
RsaNI GTAC 7 cut(s) 248, 1608, 1621, 1996, 2035, 2160, 2185
RseI CAYNNNNRTG 5 cut(s) 557, 621, 1550, 1771, 1827
SalI GTCGAC 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 336
SatI GCNGC 2 cut(s) 1557, 2075
Sau3AI GATC 7 cut(s) 109, 358, 542, 1067, 1357, 1405, 1846
Sau96I GGNCC 5 cut(s) 235, 386, 683, 1061, 1598
ScaI AGTACT 1 cut(s) 2161
SchI GAGTC 1 cut(s) 2000
ScrFI CCNGG 3 cut(s) 93, 719, 1602
SduI GDGCHC 3 cut(s) 769, 1394, 2110
SfaNI GCATC 7 cut(s) 425, 478, 739, 1170, 1492, 1691, 2191
SfuI TTCGAA 1 cut(s) 1261
SinI GGWCC 4 cut(s) 386, 683, 1061, 1598
SmiI ATTTAAAT 1 cut(s) 793
SmiMI CAYNNNNRTG 5 cut(s) 557, 621, 1550, 1771, 1827
SmlI CTYRAG 2 cut(s) 149, 2352
SmoI CTYRAG 2 cut(s) 149, 2352
SnaBI TACGTA 1 cut(s) 539
SphI GCATGC 1 cut(s) 914
SsiI CCGC 3 cut(s) 307, 1487, 1557
SspI AATATT 2 cut(s) 938, 2131
StyD4I CCNGG 3 cut(s) 91, 717, 1600
StyI CCWWGG 1 cut(s) 1970
SwaI ATTTAAAT 1 cut(s) 793
TaaI ACNGT 8 cut(s) 386, 411, 475, 606, 823, 886, 1884, 2223
TaiI ACGT 6 cut(s) 53, 216, 541, 1039, 1174, 1622
TaqII GACCGA 1 cut(s) 1078
TatI WGTACW 3 cut(s) 247, 1995, 2159
TauI GCSGC 1 cut(s) 1559
TfiI GAWTC 5 cut(s) 379, 867, 1660, 1737, 1744
TscAI CASTG 2 cut(s) 478, 1399
TseFI GTSAC 2 cut(s) 614, 1225
TseI GCWGC 1 cut(s) 2074
Tsp45I GTSAC 2 cut(s) 614, 1225
TspRI CASTG 2 cut(s) 478, 1399
VneI GTGCAC 1 cut(s) 765
VpaK11BI GGWCC 4 cut(s) 386, 683, 1061, 1598
VspI ATTAAT 1 cut(s) 1092
XbaI TCTAGA 1 cut(s) 1733
XceI RCATGY 4 cut(s) 248, 256, 914, 1832
XcmI CCANNNNNNNNNTGG 2 cut(s) 184, 777
XmiI GTMKAC 2 cut(s) 675, 825
XmnI GAANNNNTTC 1 cut(s) 894
ZrmI AGTACT 1 cut(s) 2161
Zsp2I ATGCAT 2 cut(s) 493, 1961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.