Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000080

Physical Location & Seq

Genomic Coordinates Forward (+)

17562869 .. 17591610

Gene Structure 28742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG184300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTTAATGATCAGAATCTGACTATTCCTAACATGACCATGGATTGTAGAAGAAAATCAAAAAGGTGGAGAGAAGCATCTGAGACATTGATCATCAAAGACAATCAGATTTTTGACAGCAATGATCAAAATGGTTCTGGACTGGCTTTTTTGGCTGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGATCAATGATCTTACAAGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

98

Amino Acids

11.15

Weight (kDa)

6.56

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	18 - 89	8.8e-12	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30739
fragaria_vesca	FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica	MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica	Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis	pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis	RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora	Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa	Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha	Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana	Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	19
BauI	CACGAG	1 cut(s)	177
BclI	TGATCA	3 cut(s)	10, 90, 124
BcoDI	GTCTC	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	86, 216
BpmI	CTGGAG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	72, 147
BseNI	ACTGG	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	77
Bsp143I	GATC	5 cut(s)	10, 90, 124, 273, 280
Bsp19I	CCATGG	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	73, 148
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	5 cut(s)	10, 90, 124, 273, 280
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	81, 156
BstDSI	CCRYGG	1 cut(s)	39
BstKTI	GATC	5 cut(s)	13, 93, 127, 276, 283
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	5 cut(s)	10, 90, 124, 273, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	19
CviAII	CATG	2 cut(s)	34, 40
CviJI	RGCY	3 cut(s)	146, 155, 176
CviKI_1	RGCY	3 cut(s)	146, 155, 176
DdeI	CTNAG	2 cut(s)	81, 156
DpnI	GATC	5 cut(s)	12, 92, 126, 275, 282
DpnII	GATC	5 cut(s)	10, 90, 124, 273, 280
Eco130I	CCWWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	37, 43
FaiI	YATR	4 cut(s)	35, 41, 164, 188
FatI	CATG	2 cut(s)	33, 39
FbaI	TGATCA	3 cut(s)	10, 90, 124
GsuI	CTGGAG	1 cut(s)	254
Hin1II	CATG	2 cut(s)	37, 43
HinfI	GANTC	3 cut(s)	16, 166, 221
Hpy188I	TCNGA	5 cut(s)	15, 21, 82, 108, 171
Hpy188III	TCNNGA	2 cut(s)	138, 271
HpyAV	CCTTC	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	81, 156
Hsp92II	CATG	2 cut(s)	37, 43
Ksp22I	TGATCA	3 cut(s)	10, 90, 124
Kzo9I	GATC	5 cut(s)	10, 90, 124, 273, 280
LpnPI	CCDG	5 cut(s)	123, 128, 216, 231, 284
LweI	GCATC	2 cut(s)	86, 216
MalI	GATC	5 cut(s)	12, 92, 126, 275, 282
MboI	GATC	5 cut(s)	10, 90, 124, 273, 280
MboII	GAAGA	2 cut(s)	63, 191
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	198
MseI	TTAA	3 cut(s)	6, 210, 234
MslI	CAYNNNNRTG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	10, 90, 124, 273, 280
NlaIII	CATG	2 cut(s)	37, 43
PfeI	GAWTC	2 cut(s)	16, 166
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	6, 210, 234
Sau3AI	GATC	5 cut(s)	10, 90, 124, 273, 280
SchI	GAGTC	1 cut(s)	215
SetI	ASST	3 cut(s)	68, 178, 240
SfaNI	GCATC	2 cut(s)	86, 216
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	2 cut(s)	224, 292
TfiI	GAWTC	2 cut(s)	16, 166
Tru1I	TTAA	3 cut(s)	6, 210, 234
Tru9I	TTAA	3 cut(s)	6, 210, 234
Vha464I	CTTAAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.