Rmu_sc0001593.1_g000007

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001593.1
Physical Location & Seq
Forward (+)
37717 .. 38289
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001593.1_g000007.1.cds

Sequence Viewer

Length: 573 bp
atggatatgacaaatttacgcacgtgggatatcttgaggatatacaaagaagacattgatgcagttgaccgctttaatgaagaccaaaggatcgcctttaacacgatcatggatgcagttaagagaaaaagaagtgcattattttttgttgatggtcctggtggaactgggaagacatatttataccgtgcattgctagcaaatttacggagaatgaatcatatagtcttagccacagcatcatctggaatagctgcaaatatactgcccggcgggaggacagctcactctagatttaagattccactcaatgtagatgcgtcatctatgtgttccataagtaaacagtctgttctggcacaactgatacaagactcgacttcaattatttgggatgaggcacctatgacacatcgacatgtctttgaagcacttgatcgaacttttcgagacataatggatgtcgacttaccatttggtggaaagataatgatttttgggggagattttcgtcaagtcctccctgttattcctaaggaacgaagtctgaactcattcaagcctccattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.44

Weight (kDa)

9.37

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30739
fragaria_vesca FvH4_1g22680 FvH4_1g27610 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g06413 FvH4_2g09121 FvH4_3g12510 FvH4_3g14390 FvH4_3g14390 FvH4_3g22271 FvH4_3g22301 FvH4_3g27562 FvH4_3g32073 FvH4_3g32074 FvH4_3g36631 FvH4_3g36632 FvH4_4g22471 FvH4_4g27840 FvH4_4g34213 FvH4_5g07390 FvH4_5g19921 FvH4_5g24553 FvH4_5g25262 FvH4_5g25262 FvH4_5g25551 FvH4_5g25552 FvH4_5g26291 FvH4_5g30531 FvH4_5g33791 FvH4_6g00281 FvH4_6g14351 FvH4_6g29181 FvH4_6g38512 FvH4_6g38513 FvH4_7g14272 FvH4_7g16900 FvH4_7g16900 FvH4_7g16900
malus_domestica MD05G1321100.v1.1 MD11G1142100.v1.1 MD15G1301000.v1.1
prunus_persica Prupe.4G269900_v2.0.a1 Prupe.4G273400_v2.0.a1
pyrus_communis pycom01g00220 pycom01g00230 pycom01g00510 pycom01g12380 pycom04g01450 pycom11g26740 pycom12g05830 pycom15g02410 pycom15g39190 pycom16g21480 pycom5153684g00230
rosa_chinensis RchiOBHm_Chr0c36g0502891 RchiOBHm_Chr1g0343901 RchiOBHm_Chr1g0354911 RchiOBHm_Chr1g0354931 RchiOBHm_Chr2g0095281 RchiOBHm_Chr2g0130601 RchiOBHm_Chr2g0138981 RchiOBHm_Chr2g0140301 RchiOBHm_Chr3g0473521 RchiOBHm_Chr4g0421031 RchiOBHm_Chr4g0444461 RchiOBHm_Chr5g0006651 RchiOBHm_Chr5g0007701 RchiOBHm_Chr5g0010451 RchiOBHm_Chr5g0013161 RchiOBHm_Chr5g0039821 RchiOBHm_Chr5g0039831 RchiOBHm_Chr5g0051601 RchiOBHm_Chr5g0053341 RchiOBHm_Chr5g0066551 RchiOBHm_Chr5g0066561 RchiOBHm_Chr6g0270051 RchiOBHm_Chr7g0221811
rosa_multiflora Rmu_sc0000293.1_g000031 Rmu_sc0000315.1_g000010 Rmu_sc0000342.1_g000007 Rmu_sc0000368.1_g000031 Rmu_sc0000383.1_g000027 Rmu_sc0000383.1_g000028 Rmu_sc0000446.1_g000008 Rmu_sc0000642.1_g000009 Rmu_sc0000708.1_g000015 Rmu_sc0000733.1_g000005 Rmu_sc0000733.1_g000006 Rmu_sc0001074.1_g000029 Rmu_sc0001074.1_g000030 Rmu_sc0001083.1_g000002 Rmu_sc0001083.1_g000003 Rmu_sc0001400.1_g000026 Rmu_sc0001466.1_g000001 Rmu_sc0001590.1_g000012 Rmu_sc0001590.1_g000013 Rmu_sc0001593.1_g000007 Rmu_sc0001648.1_g000007 Rmu_sc0001648.1_g000008 Rmu_sc0001861.1_g000046 Rmu_sc0001861.1_g000047 Rmu_sc0002131.1_g000033 Rmu_sc0002153.1_g000001 Rmu_sc0002153.1_g000002 Rmu_sc0002284.1_g000017 Rmu_sc0002351.1_g000030 Rmu_sc0002495.1_g000040 Rmu_sc0002495.1_g000041 Rmu_sc0002540.1_g000006 Rmu_sc0002822.1_g000028 Rmu_sc0002822.1_g000029 Rmu_sc0002822.1_g000030 Rmu_sc0003074.1_g000028 Rmu_sc0003198.1_g000015 Rmu_sc0003207.1_g000042 Rmu_sc0003441.1_g000022 Rmu_sc0003880.1_g000015 Rmu_sc0004301.1_g000006 Rmu_sc0004368.1_g000014 Rmu_sc0004467.1_g000037 Rmu_sc0004467.1_g000038 Rmu_sc0004815.1_g000007 Rmu_sc0004836.1_g000008 Rmu_sc0005065.1_g000038 Rmu_sc0005400.1_g000007 Rmu_sc0005693.1_g000018 Rmu_sc0005956.1_g000001 Rmu_sc0005999.1_g000010 Rmu_sc0005999.1_g000011 Rmu_sc0006101.1_g000002 Rmu_sc0006101.1_g000003 Rmu_sc0006101.1_g000004 Rmu_sc0006119.1_g000014 Rmu_sc0006314.1_g000002 Rmu_sc0006478.1_g000019 Rmu_sc0006478.1_g000020 Rmu_sc0006729.1_g000003 Rmu_sc0006824.1_g000018 Rmu_sc0006898.1_g000009 Rmu_sc0006898.1_g000010 Rmu_sc0007131.1_g000012 Rmu_sc0007131.1_g000013 Rmu_sc0008829.1_g000003 Rmu_sc0008921.1_g000003 Rmu_sc0009472.1_g000019 Rmu_sc0009472.1_g000020 Rmu_sc0012301.1_g000003 Rmu_sc0015523.1_g000009 Rmu_sc0019288.1_g000001 Rmu_sc0019670.1_g000001 Rmu_sc0026849.1_g000001 Rmu_sc0026849.1_g000002 Rmu_sc0031895.1_g000001
rosa_roxburghii Rroxscaffold_176G00431570 Rroxscaffold_1G00011120 Rroxscaffold_2G00105630 Rroxscaffold_2G00122600 Rroxscaffold_2G00128220 Rroxscaffold_2G00129710 Rroxscaffold_3G00218940 Rroxscaffold_3G00247370 Rroxscaffold_4G00310060 Rroxscaffold_4G00313710 Rroxscaffold_4G00319150 Rroxscaffold_5G00346740 Rroxscaffold_5G00359690 Rroxscaffold_5G00365700 Rroxscaffold_6G00394170 Rroxscaffold_6G00404040 Rroxscaffold_7G00205320 Rroxscaffold_7G00211550 Rroxscaffold_7G00211560 Rroxscaffold_7G00215100
rosa_rugosa Rorug03G0285900 Rorug03G0286000 Rorug03G0286100 Rorug03G0286200 Rorug04G0098600 Rorug04G0098700 Rorug04G0098800 Rorug04G0139000 Rorug04G0209800 Rorug05G0101300 Rorug05G0101400 Rorug05G0101500 Rorug05G0415400 Rorug05G0466200 Rorug06G0017400 Rorug06G0017500 Rorug06G0151300 Rorug06G0318500 Rorug06G0318600 Rorug06G0318700.1
rosa_samantha Rh1CG085700 Rh1CG254600 Rh2BG228400 Rh2BG351000 Rh2CG225500 Rh2CG304800 Rh2DG104100 Rh2DG341000 Rh2DG380500 Rh3AG184300 Rh3AG184400 Rh3CG208500 Rh3CG208700 Rh3CG208900 Rh4AG207400 Rh4AG413200 Rh4BG424700 Rh4CG301500 Rh4CG439000 Rh4CG439100 Rh4CG439200 Rh5AG462900 Rh5BG193500 Rh5CG089900 Rh5CG300900 Rh5CG303800 Rh5CG343800 Rh5CG431500 Rh5CG431600 Rh5DG385700 Rh5DG396200 Rh6AG400600 Rh6AG400700 Rh6BG120400 Rh6BG293100 Rh6CG020800 Rh6DG504700 Rh7AG170200 Rh7AG364500 Rh7BG310700 Rh7BG326900 Rh7CG361900 Rh7DG342300
rosa_wichuraiana Rw0G001510 Rw0G002770 Rw0G002780 Rw0G008190 Rw0G012290 Rw0G013020 Rw0G019710 Rw0G022900 Rw1G005030 Rw1G006850 Rw1G007150 Rw1G008640 Rw1G010010 Rw1G014140 Rw1G014760 Rw1G021180 Rw1G024370 Rw2G008590 Rw2G008860 Rw2G013860 Rw2G018530 Rw2G019600 Rw2G021720 Rw2G022370 Rw3G005800 Rw3G024360 Rw3G027780 Rw3G028480 Rw3G029500 Rw3G029510 Rw4G000390 Rw4G008860 Rw4G013650 Rw4G016890 Rw4G016900 Rw4G018860 Rw4G018870 Rw4G032970 Rw5G004750 Rw5G004760 Rw5G004770 Rw5G011070 Rw5G011930 Rw5G015240 Rw5G015930 Rw5G019260 Rw5G021060 Rw5G027960 Rw5G028040 Rw5G028940 Rw5G031990 Rw5G044560 Rw5G049680 Rw6G014950 Rw6G015560 Rw6G016280 Rw6G017850 Rw6G018010 Rw6G019620 Rw6G028280 Rw7G010650 Rw7G016380 Rw7G020980 Rw7G025640 Rw7G027600 Rw7G029340 Rw7G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 479
AccI GTMKAC 1 cut(s) 465
AciI CCGC 2 cut(s) 70, 273
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 13, 202
AcvI CACGTG 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 276, 479
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 3 cut(s) 384, 428, 559
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 254, 284
AluI AGCT 2 cut(s) 254, 284
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 13, 202
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
Asp700I GAANNNNTTC 1 cut(s) 554
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 270
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 534
BanI GGYRCC 1 cut(s) 400
BbrPI CACGTG 1 cut(s) 24
BbsI GAAGAC 3 cut(s) 57, 87, 179
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 2 cut(s) 197, 291
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 159, 270
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 2 cut(s) 159, 270
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 4 cut(s) 49, 103, 248, 307
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 3 cut(s) 57, 87, 179
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 479
Bse1I ACTGG 1 cut(s) 172
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 159
BseGI GGATG 3 cut(s) 118, 400, 466
BseLI CCNNNNNNNGG 2 cut(s) 276, 479
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 276, 479
BsmAI GTCTC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 90, 105, 436
BspACI CCGC 2 cut(s) 70, 273
BspLI GGNNCC 1 cut(s) 402
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 172
BssMI GATC 3 cut(s) 90, 105, 436
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 188, 348
BstBAI YACGTR 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 229, 534
BstF5I GGATG 3 cut(s) 118, 400, 466
BstKTI GATC 3 cut(s) 93, 108, 439
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 90, 105, 436
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 157, 268
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 3 cut(s) 57, 87, 179
Bsu36I CCTNAGG 1 cut(s) 534
BtsCI GGATG 3 cut(s) 118, 400, 466
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 309
CviAII CATG 2 cut(s) 109, 419
CviJI RGCY 4 cut(s) 233, 254, 284, 562
CviKI_1 RGCY 4 cut(s) 233, 254, 284, 562
DdeI CTNAG 2 cut(s) 229, 534
DpnI GATC 3 cut(s) 92, 107, 438
DpnII GATC 3 cut(s) 90, 105, 436
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 31
FaeI CATG 2 cut(s) 112, 422
FatI CATG 2 cut(s) 108, 418
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 3 cut(s) 125, 407, 473
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 197, 291
GluI GCNGC 1 cut(s) 255
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 112, 422
HincII GTYRAC 2 cut(s) 67, 466
HindII GTYRAC 2 cut(s) 67, 466
HinfI GANTC 3 cut(s) 217, 301, 374
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 3 cut(s) 67, 344, 466
Hpy188I TCNGA 1 cut(s) 549
Hpy188III TCNNGA 4 cut(s) 34, 246, 291, 449
Hpy8I GTNNAC 3 cut(s) 67, 344, 466
HpyCH4III ACNGT 2 cut(s) 188, 348
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 62, 116, 137, 191, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 229, 534
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 112, 422
Kzo9I GATC 3 cut(s) 90, 105, 436
LpnPI CCDG 7 cut(s) 144, 153, 171, 231, 283, 341, 537
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 4 cut(s) 49, 103, 248, 307
MaeI CTAG 2 cut(s) 197, 291
MaeII ACGT 1 cut(s) 23
MalI GATC 3 cut(s) 92, 107, 438
MboI GATC 3 cut(s) 90, 105, 436
MboII GAAGA 3 cut(s) 62, 92, 184
MluCI AATT 3 cut(s) 13, 202, 384
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 5 cut(s) 30, 270, 391, 530, 573
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 4 cut(s) 75, 99, 120, 297
MslI CAYNNNNRTG 3 cut(s) 107, 328, 417
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 159, 270
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 90, 105, 436
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 2 cut(s) 112, 422
NlaIV GGNNCC 1 cut(s) 402
NspI RCATGY 1 cut(s) 422
PciI ACATGT 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 2 cut(s) 217, 301
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 368
PmaCI CACGTG 1 cut(s) 24
PmlI CACGTG 1 cut(s) 24
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 24
PscI ACATGT 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 157
PspCI CACGTG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 155
RseI CAYNNNNRTG 3 cut(s) 107, 328, 417
SalI GTCGAC 1 cut(s) 464
SaqAI TTAA 4 cut(s) 75, 99, 120, 297
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 3 cut(s) 90, 105, 436
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 159, 270
SetI ASST 4 cut(s) 26, 256, 286, 406
SfaNI GCATC 4 cut(s) 49, 103, 248, 307
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 3 cut(s) 107, 328, 417
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 13, 202, 384
SsiI CCGC 2 cut(s) 70, 273
SspMI CTAG 2 cut(s) 197, 291
StyD4I CCNGG 2 cut(s) 157, 268
TaaI ACNGT 2 cut(s) 188, 348
TaiI ACGT 1 cut(s) 26
TaqI TCGA 5 cut(s) 377, 415, 439, 448, 465
TasI AATT 3 cut(s) 13, 202, 384
TfiI GAWTC 2 cut(s) 217, 301
Tru1I TTAA 4 cut(s) 75, 99, 120, 297
Tru9I TTAA 4 cut(s) 75, 99, 120, 297
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 93, 230
TspGWI ACGGA 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 2 cut(s) 13, 202
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 2 cut(s) 197, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.