G-quadruplex DNA unwinding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 96, 184 |
| AcvI | CACGTG | 2 cut(s) | 8, 509 |
| AfaI | GTAC | 2 cut(s) | 421, 434 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 386, 486 |
| AflIII | ACRYGT | 1 cut(s) | 301 |
| AgsI | TTSAA | 7 cut(s) | 27, 59, 101, 194, 202, 356, 461 |
| AluBI | AGCT | 2 cut(s) | 224, 561 |
| AluI | AGCT | 2 cut(s) | 224, 561 |
| Alw26I | GTCTC | 3 cut(s) | 206, 441, 579 |
| ApeKI | GCWGC | 2 cut(s) | 263, 308 |
| ApoI | RAATTY | 2 cut(s) | 96, 184 |
| AsuHPI | GGTGA | 1 cut(s) | 341 |
| BbrPI | CACGTG | 2 cut(s) | 8, 509 |
| BbsI | GAAGAC | 1 cut(s) | 15 |
| BbvI | GCAGC | 2 cut(s) | 250, 320 |
| BccI | CCATC | 3 cut(s) | 25, 80, 320 |
| BcoDI | GTCTC | 3 cut(s) | 206, 441, 579 |
| BglII | AGATCT | 1 cut(s) | 548 |
| BisI | GCNGC | 2 cut(s) | 264, 309 |
| BlsI | GCNGC | 2 cut(s) | 265, 310 |
| BpiI | GAAGAC | 1 cut(s) | 15 |
| BpuEI | CTTGAG | 2 cut(s) | 160, 389 |
| BsaAI | YACGTR | 2 cut(s) | 8, 509 |
| BsaJI | CCNNGG | 1 cut(s) | 578 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 386, 486 |
| Bse1I | ACTGG | 1 cut(s) | 526 |
| Bse3DI | GCAATG | 2 cut(s) | 469, 481 |
| BseDI | CCNNGG | 1 cut(s) | 578 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 386, 486 |
| BseMI | GCAATG | 2 cut(s) | 469, 481 |
| BseMII | CTCAG | 1 cut(s) | 144 |
| BseNI | ACTGG | 1 cut(s) | 526 |
| BseXI | GCAGC | 2 cut(s) | 250, 320 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 386, 486 |
| BsmAI | GTCTC | 3 cut(s) | 206, 441, 579 |
| Bsp143I | GATC | 2 cut(s) | 136, 548 |
| Bsp19I | CCATGG | 1 cut(s) | 578 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BsrDI | GCAATG | 2 cut(s) | 469, 481 |
| BsrI | ACTGG | 1 cut(s) | 526 |
| BssECI | CCNNGG | 1 cut(s) | 578 |
| BssMI | GATC | 2 cut(s) | 136, 548 |
| BssT1I | CCWWGG | 1 cut(s) | 578 |
| Bst6I | CTCTTC | 2 cut(s) | 26, 204 |
| BstBAI | YACGTR | 2 cut(s) | 8, 509 |
| BstDEI | CTNAG | 1 cut(s) | 153 |
| BstDSI | CCRYGG | 1 cut(s) | 578 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstKTI | GATC | 2 cut(s) | 139, 551 |
| BstMAI | GTCTC | 3 cut(s) | 206, 441, 579 |
| BstMBI | GATC | 2 cut(s) | 136, 548 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 471 |
| BstNSI | RCATGY | 1 cut(s) | 305 |
| BstV1I | GCAGC | 2 cut(s) | 250, 320 |
| BstV2I | GAAGAC | 1 cut(s) | 15 |
| BstX2I | RGATCY | 1 cut(s) | 548 |
| BstYI | RGATCY | 1 cut(s) | 548 |
| BtgI | CCRYGG | 1 cut(s) | 578 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 519 |
| Csp6I | GTAC | 2 cut(s) | 420, 433 |
| CviAII | CATG | 3 cut(s) | 86, 302, 579 |
| CviJI | RGCY | 2 cut(s) | 224, 561 |
| CviKI_1 | RGCY | 2 cut(s) | 224, 561 |
| CviQI | GTAC | 2 cut(s) | 420, 433 |
| DdeI | CTNAG | 1 cut(s) | 153 |
| DpnI | GATC | 2 cut(s) | 138, 550 |
| DpnII | GATC | 2 cut(s) | 136, 548 |
| Eam1104I | CTCTTC | 2 cut(s) | 26, 204 |
| EarI | CTCTTC | 2 cut(s) | 26, 204 |
| Eco130I | CCWWGG | 1 cut(s) | 578 |
| Eco72I | CACGTG | 2 cut(s) | 8, 509 |
| EcoT14I | CCWWGG | 1 cut(s) | 578 |
| ErhI | CCWWGG | 1 cut(s) | 578 |
| FaeI | CATG | 3 cut(s) | 89, 305, 582 |
| FatI | CATG | 3 cut(s) | 85, 301, 578 |
| Fnu4HI | GCNGC | 2 cut(s) | 264, 309 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 2 cut(s) | 264, 309 |
| GluI | GCNGC | 2 cut(s) | 264, 309 |
| Hin1II | CATG | 3 cut(s) | 89, 305, 582 |
| HinfI | GANTC | 2 cut(s) | 373, 513 |
| HphI | GGTGA | 1 cut(s) | 341 |
| Hpy188III | TCNNGA | 3 cut(s) | 59, 177, 344 |
| HpyCH4IV | ACGT | 2 cut(s) | 7, 508 |
| HpyCH4V | TGCA | 2 cut(s) | 266, 474 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 471 |
| HpyF3I | CTNAG | 1 cut(s) | 153 |
| HpySE526I | ACGT | 2 cut(s) | 7, 508 |
| Hsp92II | CATG | 3 cut(s) | 89, 305, 582 |
| Kzo9I | GATC | 2 cut(s) | 136, 548 |
| LpnPI | CCDG | 2 cut(s) | 56, 507 |
| Lsp1109I | GCAGC | 2 cut(s) | 250, 320 |
| MaeII | ACGT | 2 cut(s) | 7, 508 |
| MaeIII | GTNAC | 2 cut(s) | 148, 281 |
| MalI | GATC | 2 cut(s) | 138, 550 |
| MboI | GATC | 2 cut(s) | 136, 548 |
| MboII | GAAGA | 8 cut(s) | 15, 43, 89, 192, 214, 221, 359, 511 |
| MflI | RGATCY | 1 cut(s) | 548 |
| MluCI | AATT | 4 cut(s) | 96, 111, 184, 351 |
| MnlI | CCTC | 2 cut(s) | 184, 390 |
| MseI | TTAA | 2 cut(s) | 231, 291 |
| MslI | CAYNNNNRTG | 2 cut(s) | 460, 474 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 471 |
| NcoI | CCATGG | 1 cut(s) | 578 |
| NdeII | GATC | 2 cut(s) | 136, 548 |
| NlaIII | CATG | 3 cut(s) | 89, 305, 582 |
| NmuCI | GTSAC | 1 cut(s) | 281 |
| NspI | RCATGY | 1 cut(s) | 305 |
| PciI | ACATGT | 1 cut(s) | 301 |
| PfeI | GAWTC | 2 cut(s) | 373, 513 |
| PkrI | GCNGC | 2 cut(s) | 265, 310 |
| PmaCI | CACGTG | 2 cut(s) | 8, 509 |
| PmlI | CACGTG | 2 cut(s) | 8, 509 |
| Ppu21I | YACGTR | 2 cut(s) | 8, 509 |
| PscI | ACATGT | 1 cut(s) | 301 |
| PspCI | CACGTG | 2 cut(s) | 8, 509 |
| PsuI | RGATCY | 1 cut(s) | 548 |
| RsaI | GTAC | 2 cut(s) | 421, 434 |
| RsaNI | GTAC | 2 cut(s) | 420, 433 |
| RseI | CAYNNNNRTG | 2 cut(s) | 460, 474 |
| SaqAI | TTAA | 2 cut(s) | 231, 291 |
| SatI | GCNGC | 2 cut(s) | 264, 309 |
| Sau3AI | GATC | 2 cut(s) | 136, 548 |
| SetI | ASST | 5 cut(s) | 10, 226, 421, 511, 563 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 460, 474 |
| SmlI | CTYRAG | 2 cut(s) | 175, 368 |
| SmoI | CTYRAG | 2 cut(s) | 175, 368 |
| Sse9I | AATT | 4 cut(s) | 96, 111, 184, 351 |
| StyI | CCWWGG | 1 cut(s) | 578 |
| TaiI | ACGT | 2 cut(s) | 10, 511 |
| TaqI | TCGA | 1 cut(s) | 75 |
| TasI | AATT | 4 cut(s) | 96, 111, 184, 351 |
| TatI | WGTACW | 1 cut(s) | 432 |
| TfiI | GAWTC | 2 cut(s) | 373, 513 |
| Tru1I | TTAA | 2 cut(s) | 231, 291 |
| Tru9I | TTAA | 2 cut(s) | 231, 291 |
| TscAI | CASTG | 1 cut(s) | 526 |
| TseFI | GTSAC | 1 cut(s) | 281 |
| TseI | GCWGC | 2 cut(s) | 263, 308 |
| Tsp45I | GTSAC | 1 cut(s) | 281 |
| TspDTI | ATGAA | 7 cut(s) | 96, 132, 216, 222, 312, 350, 458 |
| TspRI | CASTG | 1 cut(s) | 526 |
| XapI | RAATTY | 2 cut(s) | 96, 184 |
| XceI | RCATGY | 1 cut(s) | 305 |