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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 49, 103, 286 |
| AcoI | YGGCCR | 1 cut(s) | 175 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AflIII | ACRYGT | 1 cut(s) | 82 |
| AgsI | TTSAA | 1 cut(s) | 116 |
| AjnI | CCWGG | 1 cut(s) | 236 |
| AluBI | AGCT | 1 cut(s) | 274 |
| AluI | AGCT | 1 cut(s) | 274 |
| Alw26I | GTCTC | 2 cut(s) | 263, 309 |
| AoxI | GGCC | 1 cut(s) | 175 |
| ApeKI | GCWGC | 1 cut(s) | 124 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| AsuC2I | CCSGG | 1 cut(s) | 46 |
| AsuHPI | GGTGA | 1 cut(s) | 226 |
| BalI | TGGCCA | 1 cut(s) | 177 |
| BbvI | GCAGC | 1 cut(s) | 136 |
| BccI | CCATC | 3 cut(s) | 24, 142, 196 |
| BceAI | ACGGC | 1 cut(s) | 90 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 171, 205 |
| BciT130I | CCWGG | 1 cut(s) | 238 |
| BcnI | CCSGG | 1 cut(s) | 46 |
| BcoDI | GTCTC | 2 cut(s) | 263, 309 |
| BfaI | CTAG | 2 cut(s) | 20, 266 |
| BisI | GCNGC | 2 cut(s) | 103, 125 |
| BlsI | GCNGC | 2 cut(s) | 104, 126 |
| Bme1390I | CCNGG | 2 cut(s) | 46, 238 |
| BmiI | GGNNCC | 2 cut(s) | 132, 201 |
| BmrFI | CCNGG | 2 cut(s) | 46, 238 |
| BmsI | GCATC | 2 cut(s) | 89, 226 |
| BpuMI | CCSGG | 1 cut(s) | 46 |
| BsaAI | YACGTR | 1 cut(s) | 85 |
| BseBI | CCWGG | 1 cut(s) | 238 |
| BseGI | GGATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 1 cut(s) | 320 |
| BseXI | GCAGC | 1 cut(s) | 136 |
| BshFI | GGCC | 1 cut(s) | 177 |
| BsiSI | CCGG | 1 cut(s) | 45 |
| BsmAI | GTCTC | 2 cut(s) | 263, 309 |
| BsnI | GGCC | 1 cut(s) | 177 |
| Bsp143I | GATC | 1 cut(s) | 139 |
| BspACI | CCGC | 3 cut(s) | 49, 103, 286 |
| BspANI | GGCC | 1 cut(s) | 177 |
| BspCNI | CTCAG | 1 cut(s) | 319 |
| BspLI | GGNNCC | 2 cut(s) | 132, 201 |
| BssMI | GATC | 1 cut(s) | 139 |
| Bst2UI | CCWGG | 1 cut(s) | 238 |
| BstBAI | YACGTR | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 1 cut(s) | 306 |
| BstF5I | GGATG | 1 cut(s) | 316 |
| BstKTI | GATC | 1 cut(s) | 142 |
| BstMAI | GTCTC | 2 cut(s) | 263, 309 |
| BstMBI | GATC | 1 cut(s) | 139 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 108 |
| BstNI | CCWGG | 1 cut(s) | 238 |
| BstSCI | CCNGG | 2 cut(s) | 44, 236 |
| BstV1I | GCAGC | 1 cut(s) | 136 |
| BsuRI | GGCC | 1 cut(s) | 177 |
| BtsCI | GGATG | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CseI | GACGC | 1 cut(s) | 223 |
| CsiI | ACCWGGT | 1 cut(s) | 236 |
| CviAII | CATG | 1 cut(s) | 179 |
| CviJI | RGCY | 4 cut(s) | 23, 163, 177, 274 |
| CviKI_1 | RGCY | 4 cut(s) | 23, 163, 177, 274 |
| DdeI | CTNAG | 1 cut(s) | 306 |
| DpnI | GATC | 1 cut(s) | 141 |
| DpnII | GATC | 1 cut(s) | 139 |
| EaeI | YGGCCR | 1 cut(s) | 175 |
| EciI | GGCGGA | 1 cut(s) | 275 |
| EcoRII | CCWGG | 1 cut(s) | 236 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 2 cut(s) | 148, 180 |
| FatI | CATG | 1 cut(s) | 178 |
| FauI | CCCGC | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 2 cut(s) | 103, 125 |
| FokI | GGATG | 1 cut(s) | 303 |
| Fsp4HI | GCNGC | 2 cut(s) | 103, 125 |
| FspBI | CTAG | 2 cut(s) | 20, 266 |
| GluI | GCNGC | 2 cut(s) | 103, 125 |
| HaeIII | GGCC | 1 cut(s) | 177 |
| HapII | CCGG | 1 cut(s) | 45 |
| HgaI | GACGC | 1 cut(s) | 223 |
| Hin1II | CATG | 1 cut(s) | 182 |
| HpaII | CCGG | 1 cut(s) | 45 |
| HphI | GGTGA | 1 cut(s) | 226 |
| Hpy188I | TCNGA | 5 cut(s) | 56, 80, 139, 157, 309 |
| Hpy99I | CGWCG | 1 cut(s) | 217 |
| HpyAV | CCTTC | 4 cut(s) | 38, 213, 260, 299 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 182 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 108 |
| HpyF3I | CTNAG | 1 cut(s) | 306 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| Kzo9I | GATC | 1 cut(s) | 139 |
| LmnI | GCTCC | 1 cut(s) | 279 |
| LpnPI | CCDG | 8 cut(s) | 58, 74, 113, 177, 182, 223, 250, 284 |
| Lsp1109I | GCAGC | 1 cut(s) | 136 |
| LweI | GCATC | 2 cut(s) | 89, 226 |
| MabI | ACCWGGT | 1 cut(s) | 236 |
| MaeI | CTAG | 2 cut(s) | 20, 266 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MalI | GATC | 1 cut(s) | 141 |
| MboI | GATC | 1 cut(s) | 139 |
| MlsI | TGGCCA | 1 cut(s) | 177 |
| MluCI | AATT | 2 cut(s) | 35, 279 |
| MluNI | TGGCCA | 1 cut(s) | 177 |
| MmeI | TCCRAC | 3 cut(s) | 34, 103, 233 |
| MnlI | CCTC | 4 cut(s) | 35, 42, 84, 86 |
| Mox20I | TGGCCA | 1 cut(s) | 177 |
| MscI | TGGCCA | 1 cut(s) | 177 |
| Msp20I | TGGCCA | 1 cut(s) | 177 |
| MspI | CCGG | 1 cut(s) | 45 |
| MspR9I | CCNGG | 2 cut(s) | 46, 238 |
| MvaI | CCWGG | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 108 |
| NciI | CCSGG | 1 cut(s) | 46 |
| NdeII | GATC | 1 cut(s) | 139 |
| NlaIII | CATG | 1 cut(s) | 182 |
| NlaIV | GGNNCC | 2 cut(s) | 132, 201 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 103 |
| PkrI | GCNGC | 2 cut(s) | 104, 126 |
| Ppu21I | YACGTR | 1 cut(s) | 85 |
| Psp6I | CCWGG | 1 cut(s) | 236 |
| PspGI | CCWGG | 1 cut(s) | 236 |
| PspN4I | GGNNCC | 2 cut(s) | 132, 201 |
| SatI | GCNGC | 2 cut(s) | 103, 125 |
| Sau3AI | GATC | 1 cut(s) | 139 |
| ScrFI | CCNGG | 2 cut(s) | 46, 238 |
| SetI | ASST | 5 cut(s) | 63, 87, 201, 242, 276 |
| SexAI | ACCWGGT | 1 cut(s) | 236 |
| SfaNI | GCATC | 2 cut(s) | 89, 226 |
| Sse9I | AATT | 2 cut(s) | 35, 279 |
| SsiI | CCGC | 3 cut(s) | 49, 103, 286 |
| SspMI | CTAG | 2 cut(s) | 20, 266 |
| StyD4I | CCNGG | 2 cut(s) | 44, 236 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 1 cut(s) | 142 |
| TasI | AATT | 2 cut(s) | 35, 279 |
| TauI | GCSGC | 1 cut(s) | 105 |
| TseI | GCWGC | 1 cut(s) | 124 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XspI | CTAG | 2 cut(s) | 20, 266 |