RchiOBHm_Chr0c20g0500211

Subtilisin-like serine protease

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000302
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGATTCTAGTGAACCAAATCACTGATGACTATAGCACCTTAGCTGACGCTCATGTACTTCCAGCAACAAATGTTGGTTTTCAAGCAGGTTTGAGTATCAAAACCTATATAAAATCAACAACAACACCTATAGCCACAGTCTATTCTCCACGCACTGAAATAGGAGATACACTTGCTCCAATGGTTGCTTCTTTCTCATCAAGAGGACCGAGCATAGCTAGCCCCGGAATTTTGAAACCTGACATCATTGGTCCTGGTCTTAATATCCTCGCTGCATGGCCTGTTTCGGTGGATAATGTCACAACATTTGACATTCTTTCAGGTACCTTAGTGTCATGCCCACACCTAAGTGGCATTGCAGCCTTGATCAAGAGTTCACACCCGGACTGGTCACCTGCTGCCATTAAATCGGCCATTATGACAATCGCTGATATGCTAAATCTCGAAGGCATACCAATTGTTGATAGATCAAATATCCCAGCAGACATCTACAGCACTGGCTCAAGCCATGTCATCTATGACATAAAACCAATGACCCGGGGATCATCTATGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

185

Amino Acids

19.41

Weight (kDa)

5.36

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 57 - 146 1.2e-13 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 2 cut(s) 77, 403
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 2 cut(s) 57, 325
AgsI TTSAA 2 cut(s) 83, 235
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 2 cut(s) 44, 218
AluI AGCT 2 cut(s) 44, 218
AlwI GGATC 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 2 cut(s) 278, 411
ApeKI GCWGC 3 cut(s) 272, 359, 398
ApoI RAATTY 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 206, 251
AsuC2I CCSGG 4 cut(s) 225, 383, 538, 539
AsuHPI GGTGA 1 cut(s) 384
AsuNHI GCTAGC 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 2 cut(s) 206, 251
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 259, 371, 385
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 366
BcnI CCSGG 4 cut(s) 225, 383, 538, 539
BfaI CTAG 2 cut(s) 8, 219
BfmI CTRYAG 3 cut(s) 31, 129, 490
BfuAI ACCTGC 2 cut(s) 77, 403
BisI GCNGC 3 cut(s) 273, 360, 399
BlsI GCNGC 3 cut(s) 274, 361, 400
Bme1390I CCNGG 5 cut(s) 225, 255, 383, 538, 539
Bme18I GGWCC 2 cut(s) 206, 251
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 206, 251
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 5 cut(s) 225, 255, 383, 538, 539
BmtI GCTAGC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 487
BpuMI CCSGG 4 cut(s) 225, 383, 538, 539
BsaJI CCNNGG 3 cut(s) 223, 537, 538
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse1I ACTGG 2 cut(s) 392, 502
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 223, 537, 538
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 392, 502
BseXI GCAGC 3 cut(s) 259, 371, 385
BseYI CCCAGC 1 cut(s) 478
BshFI GGCC 2 cut(s) 280, 413
BshNI GGYRCC 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 3 cut(s) 225, 383, 538
BsnI GGCC 2 cut(s) 280, 413
BsoBI CYCGRG 1 cut(s) 537
Bsp143I GATC 3 cut(s) 366, 467, 542
BspANI GGCC 2 cut(s) 280, 413
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 2 cut(s) 77, 403
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 2 cut(s) 392, 502
BssECI CCNNGG 3 cut(s) 223, 537, 538
BssMI GATC 3 cut(s) 366, 467, 542
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 40, 328, 347
BstEII GGTNACC 1 cut(s) 390
BstKTI GATC 3 cut(s) 369, 470, 545
BstMBI GATC 3 cut(s) 366, 467, 542
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstNI CCWGG 1 cut(s) 255
BstPI GGTNACC 1 cut(s) 390
BstSCI CCNGG 5 cut(s) 223, 253, 381, 536, 537
BstSFI CTRYAG 3 cut(s) 31, 129, 490
BstV1I GCAGC 3 cut(s) 259, 371, 385
BsuRI GGCC 2 cut(s) 280, 413
BtsIMutI CAGTG 3 cut(s) 21, 153, 495
BveI ACCTGC 2 cut(s) 77, 403
Cac8I GCNNGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 206, 251
Cfr9I CCCGGG 1 cut(s) 537
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 56, 324
CviAII CATG 4 cut(s) 53, 276, 336, 509
CviJI RGCY 9 cut(s) 44, 134, 218, 222, 280, 362, 413, 501, 507
CviKI_1 RGCY 9 cut(s) 44, 134, 218, 222, 280, 362, 413, 501, 507
CviQI GTAC 2 cut(s) 56, 324
DdeI CTNAG 3 cut(s) 40, 328, 347
DpnI GATC 3 cut(s) 368, 469, 544
DpnII GATC 3 cut(s) 366, 467, 542
EaeI YGGCCR 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 206, 251
Eco88I CYCGRG 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 56, 279, 339, 512
FatI CATG 4 cut(s) 52, 275, 335, 508
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 3 cut(s) 273, 360, 399
Fsp4HI GCNGC 3 cut(s) 273, 360, 399
FspBI CTAG 2 cut(s) 8, 219
GluI GCNGC 3 cut(s) 273, 360, 399
GsaI CCCAGC 1 cut(s) 482
HaeIII GGCC 2 cut(s) 280, 413
HapII CCGG 3 cut(s) 225, 383, 538
HgaI GACGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 56, 279, 339, 512
HinfI GANTC 1 cut(s) 4
HpaII CCGG 3 cut(s) 225, 383, 538
HphI GGTGA 1 cut(s) 384
Hpy166II GTNNAC 2 cut(s) 13, 377
Hpy188III TCNNGA 3 cut(s) 201, 370, 443
Hpy8I GTNNAC 2 cut(s) 13, 377
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 275, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 3 cut(s) 40, 328, 347
Hsp92II CATG 4 cut(s) 56, 279, 339, 512
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 3 cut(s) 366, 467, 542
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 3 cut(s) 259, 371, 385
MaeI CTAG 2 cut(s) 8, 219
MaeIII GTNAC 2 cut(s) 298, 390
MalI GATC 3 cut(s) 368, 469, 544
MboI GATC 3 cut(s) 366, 467, 542
MfeI CAATTG 1 cut(s) 456
MluCI AATT 2 cut(s) 228, 456
MnlI CCTC 2 cut(s) 197, 278
MseI TTAA 2 cut(s) 261, 405
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 3 cut(s) 225, 383, 538
MspR9I CCNGG 5 cut(s) 225, 255, 383, 538, 539
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 219
NciI CCSGG 4 cut(s) 225, 383, 538, 539
NdeII GATC 3 cut(s) 366, 467, 542
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 56, 279, 339, 512
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 298, 390
OliI CACNNNNGTG 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 274, 361, 400
Psp6I CCWGG 1 cut(s) 253
PspEI GGTNACC 1 cut(s) 390
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 206, 251
RsaI GTAC 2 cut(s) 57, 325
RsaNI GTAC 2 cut(s) 56, 324
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 2 cut(s) 261, 405
SatI GCNGC 3 cut(s) 273, 360, 399
Sau3AI GATC 3 cut(s) 366, 467, 542
Sau96I GGNCC 2 cut(s) 206, 251
ScrFI CCNGG 5 cut(s) 225, 255, 383, 538, 539
SfcI CTRYAG 3 cut(s) 31, 129, 490
SinI GGWCC 2 cut(s) 206, 251
SmaI CCCGGG 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 2 cut(s) 228, 456
SspMI CTAG 2 cut(s) 8, 219
StyD4I CCNGG 5 cut(s) 223, 253, 381, 536, 537
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 444
TaqII GACCGA 1 cut(s) 223
TasI AATT 2 cut(s) 228, 456
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 261, 405
Tru9I TTAA 2 cut(s) 261, 405
TscAI CASTG 3 cut(s) 28, 160, 502
TseFI GTSAC 2 cut(s) 298, 390
TseI GCWGC 3 cut(s) 272, 359, 398
Tsp45I GTSAC 2 cut(s) 298, 390
TspMI CCCGGG 1 cut(s) 537
TspRI CASTG 3 cut(s) 28, 160, 502
VpaK11BI GGWCC 2 cut(s) 206, 251
XapI RAATTY 1 cut(s) 228
XmaI CCCGGG 1 cut(s) 537
XspI CTAG 2 cut(s) 8, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.