Rmu_sc0006398.1_g000007

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006398.1
OG0000302
Physical Location & Seq
Reverse (-)
19576 .. 20492
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006398.1_g000007.1.cds

Sequence Viewer

Length: 642 bp
atgcaagaaattctggccattaatattgttgcttcaaaccccacattagttccaactccatctactgcaaatctgcaatccattatgaagtactcaaatggtagactaacacaaacaactttcacttttgaagttcttaatcatcagaagatggataaccaaagctcacaccctaactggtcgccagctgccattaagtctgcaatcaagacaaccgccgatgtactaaacctcggaggcaagcccattgttgatgaaagacatgctccagcagacatctttgccactggtgcaggccatgtcaaaccttcaaaagcaaatgaccctgggctcatctacgacctaaccctgaagattacatcccctacttgtgcgtctcaagattacacaaggacggtgacgaatgttggtccagctaattccacttacaagttggatcttttggtaccgaaaacaataggcatgactgtgagtccttcagtgctcacattcacagaggtcagccagactatcacataccatgtcaagtttgtcccacaaaatggtatggggaaggatggaccattccatcagggatatctgagatgggtttctgataagcattctgttactagccccatagtggtgaggcacattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

213

Amino Acids

23.15

Weight (kDa)

8.95

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 542
AccI GTMKAC 1 cut(s) 103
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 371, 462
AfaI GTAC 3 cut(s) 92, 225, 447
AfiI CCNNNNNNNGG 2 cut(s) 542, 622
AgsI TTSAA 3 cut(s) 36, 131, 312
AhdI GACNNNNNGTC 1 cut(s) 471
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 165, 188, 416
AluI AGCT 3 cut(s) 165, 188, 416
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 444
AoxI GGCC 2 cut(s) 15, 295
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 9
AseI ATTAAT 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 410, 560
AsuHPI GGTGA 2 cut(s) 409, 637
AvaII GGWCC 2 cut(s) 410, 560
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 175
BccI CCATC 5 cut(s) 67, 145, 551, 576, 579
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 1 cut(s) 612
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 2 cut(s) 410, 560
BmeRI GACNNNNNGTC 1 cut(s) 471
BmgT120I GGNCC 2 cut(s) 410, 560
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 232, 325, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 622
Bse1I ACTGG 2 cut(s) 182, 292
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 232, 325, 326
BseGI GGATG 2 cut(s) 359, 562
BseLI CCNNNNNNNGG 2 cut(s) 542, 622
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 2 cut(s) 182, 292
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 17, 297
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 486
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 542, 622
BsmAI GTCTC 1 cut(s) 381
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 2 cut(s) 17, 297
Bsp1286I GDGCHC 2 cut(s) 333, 486
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 1 cut(s) 216
BspANI GGCC 2 cut(s) 17, 297
BspCNI CTCAG 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 445
BsrI ACTGG 2 cut(s) 182, 292
BssECI CCNNGG 3 cut(s) 232, 325, 326
BssMI GATC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 397, 469
BstC8I GCNNGC 3 cut(s) 186, 242, 295
BstDEI CTNAG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 359, 562
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 2 cut(s) 17, 297
BtsCI GGATG 2 cut(s) 359, 562
BtsIMutI CAGTG 2 cut(s) 285, 486
Cac8I GCNNGC 3 cut(s) 186, 242, 295
Cfr13I GGNCC 2 cut(s) 410, 560
CseI GACGC 1 cut(s) 363
Csp6I GTAC 3 cut(s) 91, 224, 446
CviAII CATG 4 cut(s) 263, 299, 463, 521
CviJI RGCY 9 cut(s) 17, 165, 188, 244, 297, 331, 416, 504, 615
CviKI_1 RGCY 9 cut(s) 17, 165, 188, 244, 297, 331, 416, 504, 615
CviQI GTAC 3 cut(s) 91, 224, 446
DdeI CTNAG 1 cut(s) 581
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DriI GACNNNNNGTC 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 578
Eco47I GGWCC 2 cut(s) 410, 560
Eco57I CTGAAG 2 cut(s) 371, 462
EcoRII CCWGG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 578
EcoT38I GRGCYC 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 4 cut(s) 266, 302, 466, 524
FaiI YATR 8 cut(s) 86, 264, 300, 464, 517, 522, 548, 620
FaqI GGGAC 1 cut(s) 518
FatI CATG 4 cut(s) 262, 298, 462, 520
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 346, 569
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 612
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 17, 297
HgaI GACGC 1 cut(s) 363
Hin1II CATG 4 cut(s) 266, 302, 466, 524
HinfI GANTC 1 cut(s) 472
HphI GGTGA 2 cut(s) 409, 637
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 147, 236, 582, 595
Hpy188III TCNNGA 2 cut(s) 208, 380
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 318, 486, 547
HpyCH4III ACNGT 2 cut(s) 397, 469
HpyCH4V TGCA 5 cut(s) 4, 68, 76, 203, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 581
Hsp92II CATG 4 cut(s) 266, 302, 466, 524
KpnI GGTACC 1 cut(s) 449
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 1 cut(s) 175
MaeI CTAG 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 397, 607
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 2 cut(s) 160, 364
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 333, 486
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 2 cut(s) 9, 418
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 481
MmeI TCCRAC 2 cut(s) 77, 414
MnlI CCTC 4 cut(s) 230, 242, 490, 621
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 21, 138, 195
MslI CAYNNNNRTG 2 cut(s) 467, 623
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 1 cut(s) 436
NlaIII CATG 4 cut(s) 266, 302, 466, 524
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 1 cut(s) 266
PasI CCCWGGG 1 cut(s) 326
PctI GAATGC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 2 cut(s) 410, 560
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 92, 225, 447
RsaNI GTAC 3 cut(s) 91, 224, 446
RseI CAYNNNNRTG 2 cut(s) 467, 623
SaqAI TTAA 3 cut(s) 21, 138, 195
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 2 cut(s) 410, 560
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 333, 486
SetI ASST 7 cut(s) 167, 190, 234, 310, 345, 418, 501
SinI GGWCC 2 cut(s) 410, 560
SmiMI CAYNNNNRTG 2 cut(s) 467, 623
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 2 cut(s) 9, 418
SsiI CCGC 1 cut(s) 216
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 2 cut(s) 397, 469
TasI AATT 2 cut(s) 9, 418
TatI WGTACW 2 cut(s) 90, 223
Tru1I TTAA 3 cut(s) 21, 138, 195
Tru9I TTAA 3 cut(s) 21, 138, 195
TscAI CASTG 2 cut(s) 292, 486
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 101, 270
TspRI CASTG 2 cut(s) 292, 486
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 410, 560
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 612
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.