Rh7CG193100

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000302
Physical Location & Seq
Reverse (-)
17038271 .. 17039528
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG193100.1

Sequence Viewer

Length: 804 bp
ATGGGAAAGAATATGATGGGGAATTGTTATTCCAGGATCAAAATTTTTAGTTCAAATTTGTTACCTCTTGTTTATGCGGGTGCATATAGCAATGATTCAACAGCTCTGTGCGATGCAGGAACCCTTAATGGAGTTGAAGGGAAAGTGGTGCTGTGTGAAAGAGGTGGAGAAATTGGAAGAATTGCCAGAGGTGAAGAAGTCAAAAGAGCAGGTGGTGCTGCCATGATCCTTATGAACGAAGAAACAAATGGCTATAGCACCTTAGCTGACGGTCATGTGCTTCCCCGCAACCCATGCCATGTTAACCCTTCAAGAGCAAATGACCCCGGGCTAATCTACGACTTAGAACCAGCGGATTACATCCCCTATCTATGCGGTTTGAATTACAGTGATGATCAGATACAGATCATCACCCAACAAACAGTGAAATGCTCTCATGTAGGAGACATACCAGAAGCGCAGCTAAATTGTCCTTCATTTTCTATTTTATTTGAGAACGTGACCAAGTCTCAAGCTTACACAAGGACGGTGACTAATGTTGGCCCAGCTAACTCAACTTACAGGTTAGAGGTTGGGGTACCAAGTAAAATCGCAATAGGCATTGATACTGGGGAAATTACATTTACAGAGGTTGGACAGAAGATTACATACCAGGTGACGTTTAACCCTCTACAAGGTGCAGGGAAGGATGCACTACTTGTTCAGGGATATCTGAGATGGGTCTCTGATCAGCATTCTGTTACTAGCCCCATATCTGTGATCTTCAACAGACAGTGTAAATTATCGCAAGCTGTGATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

267

Amino Acids

28.93

Weight (kDa)

5.44

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 22 - 93 1.9e-09 PA domain
fn3_6 PF17766 154 - 253 9.6e-25 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 577
AciI CCGC 4 cut(s) 77, 286, 353, 375
AclWI GGATC 2 cut(s) 44, 220
AcsI RAATTY 2 cut(s) 42, 55
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 6 cut(s) 54, 99, 137, 312, 382, 766
AjnI CCWGG 2 cut(s) 32, 651
AluBI AGCT 6 cut(s) 104, 266, 463, 515, 548, 791
AluI AGCT 6 cut(s) 104, 266, 463, 515, 548, 791
Alw26I GTCTC 3 cut(s) 438, 513, 727
AlwI GGATC 2 cut(s) 44, 220
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 218, 460
ApoI RAATTY 2 cut(s) 42, 55
Asp718I GGTACC 1 cut(s) 577
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 2 cut(s) 327, 328
AsuHPI GGTGA 4 cut(s) 203, 403, 541, 667
AvaI CYCGRG 1 cut(s) 326
BanI GGYRCC 1 cut(s) 577
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BbvI GCAGC 2 cut(s) 205, 472
BccI CCATC 2 cut(s) 10, 711
BciT130I CCWGG 2 cut(s) 34, 653
BclI TGATCA 2 cut(s) 394, 727
BcnI CCSGG 2 cut(s) 327, 328
BcoDI GTCTC 3 cut(s) 438, 513, 727
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 200
BisI GCNGC 2 cut(s) 219, 461
BlsI GCNGC 2 cut(s) 220, 462
Bme1390I CCNGG 4 cut(s) 34, 327, 328, 653
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 2 cut(s) 121, 579
BmrFI CCNGG 4 cut(s) 34, 327, 328, 653
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 103, 679
BmuI ACTGGG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 327, 328
BsaBI GATNNNNATC 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 727
BsaJI CCNNGG 2 cut(s) 325, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 404
BseBI CCWGG 2 cut(s) 34, 653
BseDI CCNNGG 2 cut(s) 325, 326
BseGI GGATG 2 cut(s) 360, 694
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 1 cut(s) 613
BseXI GCAGC 2 cut(s) 205, 472
BseYI CCCAGC 1 cut(s) 544
BsgI GTGCAG 1 cut(s) 699
BshFI GGCC 1 cut(s) 543
BshNI GGYRCC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 3 cut(s) 438, 513, 727
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 1 cut(s) 543
Bso31I GGTCTC 1 cut(s) 727
BsoBI CYCGRG 1 cut(s) 326
Bsp143I GATC 6 cut(s) 36, 225, 394, 405, 727, 759
BspACI CCGC 4 cut(s) 77, 286, 353, 375
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 1 cut(s) 705
BspLI GGNNCC 2 cut(s) 121, 579
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 44, 220
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 2 cut(s) 325, 326
BssMI GATC 6 cut(s) 36, 225, 394, 405, 727, 759
Bst2UI CCWGG 2 cut(s) 34, 653
Bst4CI ACNGT 5 cut(s) 272, 389, 424, 529, 774
BstAPI GCANNNNNTGC 2 cut(s) 215, 294
BstC8I GCNNGC 1 cut(s) 789
BstDEI CTNAG 3 cut(s) 262, 343, 713
BstENI CCTNNNNNAGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 360, 694
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 6 cut(s) 39, 228, 397, 408, 730, 762
BstMAI GTCTC 3 cut(s) 438, 513, 727
BstMBI GATC 6 cut(s) 36, 225, 394, 405, 727, 759
BstMWI GCNNNNNNNGC 2 cut(s) 215, 294
BstNI CCWGG 2 cut(s) 34, 653
BstSCI CCNGG 4 cut(s) 32, 325, 326, 651
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 205, 472
BsuRI GGCC 1 cut(s) 543
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 360, 694
BtsIMutI CAGTG 3 cut(s) 394, 429, 779
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 789
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 542
Cfr9I CCCGGG 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 1 cut(s) 578
CviAII CATG 5 cut(s) 223, 275, 294, 299, 437
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 3 cut(s) 262, 343, 713
DpnI GATC 6 cut(s) 38, 227, 396, 407, 729, 761
DpnII GATC 6 cut(s) 36, 225, 394, 405, 727, 759
Eco31I GGTCTC 1 cut(s) 727
Eco32I GATATC 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 32, 651
EcoRV GATATC 1 cut(s) 710
FaeI CATG 5 cut(s) 226, 278, 297, 302, 440
FatI CATG 5 cut(s) 222, 274, 293, 298, 436
FauI CCCGC 2 cut(s) 70, 293
FbaI TGATCA 2 cut(s) 394, 727
Fnu4HI GCNGC 2 cut(s) 219, 461
FokI GGATG 2 cut(s) 347, 701
Fsp4HI GCNGC 2 cut(s) 219, 461
FspBI CTAG 1 cut(s) 744
GlaI GCGC 1 cut(s) 459
GluI GCNGC 2 cut(s) 219, 461
GsaI CCCAGC 1 cut(s) 548
HaeIII GGCC 1 cut(s) 543
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 460
Hin1II CATG 5 cut(s) 226, 278, 297, 302, 440
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 1 cut(s) 95
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 327
HphI GGTGA 4 cut(s) 203, 403, 541, 667
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 399, 714, 727
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 4 cut(s) 131, 318, 483, 679
HpyCH4III ACNGT 5 cut(s) 272, 389, 424, 529, 774
HpyCH4IV ACGT 2 cut(s) 498, 659
HpyCH4V TGCA 4 cut(s) 83, 116, 680, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 294
HpyF3I CTNAG 3 cut(s) 262, 343, 713
HpySE526I ACGT 2 cut(s) 498, 659
Hsp92II CATG 5 cut(s) 226, 278, 297, 302, 440
HspAI GCGC 1 cut(s) 458
KpnI GGTACC 1 cut(s) 581
Ksp22I TGATCA 2 cut(s) 394, 727
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 6 cut(s) 36, 225, 394, 405, 727, 759
Lsp1109I GCAGC 2 cut(s) 205, 472
LweI GCATC 2 cut(s) 103, 679
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 1 cut(s) 744
MaeII ACGT 2 cut(s) 498, 659
MaeIII GTNAC 5 cut(s) 60, 499, 529, 655, 739
MalI GATC 6 cut(s) 38, 227, 396, 407, 729, 761
MboI GATC 6 cut(s) 36, 225, 394, 405, 727, 759
MboII GAAGA 5 cut(s) 189, 206, 251, 652, 754
MluCI AATT 9 cut(s) 22, 42, 55, 171, 180, 382, 466, 615, 779
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 6 cut(s) 75, 155, 182, 562, 622, 678
MseI TTAA 3 cut(s) 126, 303, 663
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 4 cut(s) 34, 327, 328, 653
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 2 cut(s) 34, 653
MwoI GCNNNNNNNGC 2 cut(s) 215, 294
NciI CCSGG 2 cut(s) 327, 328
NdeII GATC 6 cut(s) 36, 225, 394, 405, 727, 759
NlaIII CATG 5 cut(s) 226, 278, 297, 302, 440
NlaIV GGNNCC 2 cut(s) 121, 579
NmuCI GTSAC 3 cut(s) 499, 529, 655
PaqCI CACCTGC 1 cut(s) 200
PctI GAATGC 1 cut(s) 733
PfeI GAWTC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 2 cut(s) 220, 462
Psp6I CCWGG 2 cut(s) 32, 651
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 2 cut(s) 32, 651
PspN4I GGNNCC 2 cut(s) 121, 579
PspPI GGNCC 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 505
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 3 cut(s) 126, 303, 663
SatI GCNGC 2 cut(s) 219, 461
Sau3AI GATC 6 cut(s) 36, 225, 394, 405, 727, 759
Sau96I GGNCC 1 cut(s) 542
ScrFI CCNGG 4 cut(s) 34, 327, 328, 653
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 2 cut(s) 103, 679
SfcI CTRYAG 1 cut(s) 253
SmaI CCCGGG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
Sse9I AATT 9 cut(s) 22, 42, 55, 171, 180, 382, 466, 615, 779
SsiI CCGC 4 cut(s) 77, 286, 353, 375
SspMI CTAG 1 cut(s) 744
StyD4I CCNGG 4 cut(s) 32, 325, 326, 651
TaaI ACNGT 5 cut(s) 272, 389, 424, 529, 774
TaiI ACGT 2 cut(s) 501, 662
TasI AATT 9 cut(s) 22, 42, 55, 171, 180, 382, 466, 615, 779
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 126, 303, 663
Tru9I TTAA 3 cut(s) 126, 303, 663
TscAI CASTG 3 cut(s) 394, 429, 779
TseFI GTSAC 3 cut(s) 499, 529, 655
TseI GCWGC 2 cut(s) 218, 460
Tsp45I GTSAC 3 cut(s) 499, 529, 655
TspDTI ATGAA 2 cut(s) 248, 465
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 3 cut(s) 394, 429, 779
Tth111I GACNNNGTC 1 cut(s) 505
XagI CCTNNNNNAGG 1 cut(s) 672
XapI RAATTY 2 cut(s) 42, 55
XmaI CCCGGG 1 cut(s) 326
XspI CTAG 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.