subtilisin-like protease
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Inhibitor_I9 | PF05922 | 41 - 126 | 6.3e-11 | Peptidase inhibitor I9 |
| Peptidase_S8 | PF00082 | 149 - 233 | 7.3e-07 | Subtilase family |
| PA | PF02225 | 241 - 311 | 3.2e-09 | PA domain |
| Peptidase_S8 | PF00082 | 336 - 429 | 1.6e-17 | Subtilase family |
| fn3_6 | PF17766 | 507 - 607 | 2.8e-21 | Fibronectin type-III domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1252 |
| Acc36I | ACCTGC | 1 cut(s) | 1252 |
| Acc65I | GGTACC | 1 cut(s) | 195 |
| AccB1I | GGYRCC | 2 cut(s) | 195, 590 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 274 |
| AccBSI | CCGCTC | 1 cut(s) | 350 |
| AccI | GTMKAC | 1 cut(s) | 1753 |
| AciI | CCGC | 4 cut(s) | 80, 348, 561, 1725 |
| AcoI | YGGCCR | 1 cut(s) | 1302 |
| AcsI | RAATTY | 3 cut(s) | 465, 682, 949 |
| AcuI | CTGAAG | 1 cut(s) | 1299 |
| AdeI | CACNNNGTG | 1 cut(s) | 274 |
| AfaI | GTAC | 3 cut(s) | 197, 519, 1174 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 274, 443 |
| AflII | CTTAAG | 1 cut(s) | 1633 |
| AflIII | ACRYGT | 3 cut(s) | 51, 660, 907 |
| AgsI | TTSAA | 9 cut(s) | 317, 752, 954, 985, 1072, 1179, 1371, 1441, 1614 |
| AhlI | ACTAGT | 1 cut(s) | 58 |
| AjiI | CACGTC | 1 cut(s) | 663 |
| AjnI | CCWGG | 2 cut(s) | 1050, 1384 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1010, 1042 |
| AleI | CACNNNNGTG | 1 cut(s) | 1197 |
| Alw21I | GWGCWC | 3 cut(s) | 700, 1226, 1493 |
| Alw26I | GTCTC | 1 cut(s) | 1791 |
| Alw44I | GTGCAC | 1 cut(s) | 696 |
| AoxI | GGCC | 7 cut(s) | 434, 646, 1115, 1149, 1302, 1354, 1600 |
| ApaLI | GTGCAC | 1 cut(s) | 696 |
| ApeKI | GCWGC | 8 cut(s) | 83, 290, 406, 409, 1109, 1208, 1247, 1328 |
| ApoI | RAATTY | 3 cut(s) | 465, 682, 949 |
| Asp718I | GGTACC | 1 cut(s) | 195 |
| AspLEI | GCGC | 1 cut(s) | 1352 |
| AspS9I | GGNCC | 5 cut(s) | 434, 735, 1043, 1088, 1601 |
| AsuC2I | CCSGG | 1 cut(s) | 1092 |
| AsuHPI | GGTGA | 7 cut(s) | 458, 940, 1013, 1184, 1233, 1462, 1574 |
| AvaII | GGWCC | 3 cut(s) | 735, 1043, 1088 |
| AxyI | CCTNAGG | 1 cut(s) | 1668 |
| BaeGI | GKGCMC | 1 cut(s) | 700 |
| BanI | GGYRCC | 2 cut(s) | 195, 590 |
| BanII | GRGCYC | 2 cut(s) | 1226, 1392 |
| Bbv12I | GWGCWC | 3 cut(s) | 700, 1226, 1493 |
| BbvI | GCAGC | 8 cut(s) | 95, 302, 393, 421, 1096, 1220, 1234, 1340 |
| BccI | CCATC | 5 cut(s) | 316, 329, 501, 1727, 1742 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 143, 177, 979, 1013 |
| BciT130I | CCWGG | 2 cut(s) | 1052, 1386 |
| BclI | TGATCA | 2 cut(s) | 1003, 1312 |
| BcnI | CCSGG | 1 cut(s) | 1092 |
| BcoDI | GTCTC | 1 cut(s) | 1791 |
| BcuI | ACTAGT | 1 cut(s) | 58 |
| BfaI | CTAG | 4 cut(s) | 59, 98, 425, 1106 |
| BfmI | CTRYAG | 3 cut(s) | 407, 921, 966 |
| BfrI | CTTAAG | 1 cut(s) | 1633 |
| BfuAI | ACCTGC | 1 cut(s) | 1252 |
| Bme1390I | CCNGG | 3 cut(s) | 1052, 1092, 1386 |
| Bme18I | GGWCC | 3 cut(s) | 735, 1043, 1088 |
| BmgBI | CACGTC | 1 cut(s) | 663 |
| BmgT120I | GGNCC | 5 cut(s) | 434, 735, 1043, 1088, 1601 |
| BmiI | GGNNCC | 6 cut(s) | 197, 592, 736, 737, 1090, 1629 |
| BmrFI | CCNGG | 3 cut(s) | 1052, 1092, 1386 |
| BmsI | GCATC | 3 cut(s) | 3, 942, 1110 |
| BpmI | CTGGAG | 3 cut(s) | 513, 615, 696 |
| BpuEI | CTTGAG | 2 cut(s) | 260, 1202 |
| BpuMI | CCSGG | 1 cut(s) | 1092 |
| BsaBI | GATNNNNATC | 1 cut(s) | 17 |
| BsaJI | CCNNGG | 4 cut(s) | 649, 1017, 1384, 1385 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 946, 976 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 274, 443 |
| Bse1I | ACTGG | 4 cut(s) | 286, 625, 632, 1241 |
| Bse21I | CCTNAGG | 1 cut(s) | 1668 |
| Bse3DI | GCAATG | 3 cut(s) | 712, 1203, 1269 |
| Bse8I | GATNNNNATC | 1 cut(s) | 17 |
| BseBI | CCWGG | 2 cut(s) | 1052, 1386 |
| BseDI | CCNNGG | 4 cut(s) | 649, 1017, 1384, 1385 |
| BseGI | GGATG | 3 cut(s) | 352, 493, 1101 |
| BseJI | GATNNNNATC | 1 cut(s) | 17 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 274, 443 |
| BseMI | GCAATG | 3 cut(s) | 712, 1203, 1269 |
| BseMII | CTCAG | 3 cut(s) | 1583, 1659, 1778 |
| BseNI | ACTGG | 4 cut(s) | 286, 625, 632, 1241 |
| BseRI | GAGGAG | 1 cut(s) | 516 |
| BseSI | GKGCMC | 1 cut(s) | 700 |
| BseXI | GCAGC | 8 cut(s) | 95, 302, 393, 421, 1096, 1220, 1234, 1340 |
| BseYI | CCCAGC | 2 cut(s) | 1603, 1739 |
| BshFI | GGCC | 7 cut(s) | 436, 648, 1117, 1151, 1304, 1356, 1602 |
| BshNI | GGYRCC | 2 cut(s) | 195, 590 |
| BsiHKAI | GWGCWC | 3 cut(s) | 700, 1226, 1493 |
| BsiSI | CCGG | 2 cut(s) | 899, 1092 |
| BslFI | GGGAC | 4 cut(s) | 435, 577, 721, 1074 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 274, 443 |
| BsmAI | GTCTC | 1 cut(s) | 1791 |
| BsmFI | GGGAC | 4 cut(s) | 435, 577, 721, 1074 |
| BsmI | GAATGC | 1 cut(s) | 1795 |
| BsnI | GGCC | 7 cut(s) | 436, 648, 1117, 1151, 1304, 1356, 1602 |
| Bsp1286I | GDGCHC | 4 cut(s) | 700, 1226, 1392, 1493 |
| Bsp143I | GATC | 3 cut(s) | 18, 1003, 1312 |
| Bsp19I | CCATGG | 1 cut(s) | 649 |
| BspACI | CCGC | 4 cut(s) | 80, 348, 561, 1725 |
| BspANI | GGCC | 7 cut(s) | 436, 648, 1117, 1151, 1304, 1356, 1602 |
| BspCNI | CTCAG | 3 cut(s) | 1582, 1660, 1777 |
| BspLI | GGNNCC | 6 cut(s) | 197, 592, 736, 737, 1090, 1629 |
| BspMAI | CTGCAG | 2 cut(s) | 411, 925 |
| BspMI | ACCTGC | 1 cut(s) | 1252 |
| BspT107I | GGYRCC | 2 cut(s) | 195, 590 |
| BspTI | CTTAAG | 1 cut(s) | 1633 |
| BsrBI | CCGCTC | 1 cut(s) | 350 |
| BsrDI | GCAATG | 3 cut(s) | 712, 1203, 1269 |
| BsrI | ACTGG | 4 cut(s) | 286, 625, 632, 1241 |
| BssECI | CCNNGG | 4 cut(s) | 649, 1017, 1384, 1385 |
| BssMI | GATC | 3 cut(s) | 18, 1003, 1312 |
| BssNAI | GTATAC | 1 cut(s) | 1754 |
| BssT1I | CCWWGG | 2 cut(s) | 649, 1017 |
| Bst1107I | GTATAC | 1 cut(s) | 1754 |
| Bst2UI | CCWGG | 2 cut(s) | 1052, 1386 |
| Bst4CI | ACNGT | 3 cut(s) | 568, 1660, 1712 |
| Bst6I | CTCTTC | 1 cut(s) | 312 |
| BstAFI | CTTAAG | 1 cut(s) | 1633 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1061 |
| BstC8I | GCNNGC | 5 cut(s) | 116, 865, 1011, 1297, 1354 |
| BstDEI | CTNAG | 5 cut(s) | 1146, 1196, 1569, 1668, 1764 |
| BstDSI | CCRYGG | 1 cut(s) | 649 |
| BstEII | GGTNACC | 1 cut(s) | 1239 |
| BstF5I | GGATG | 3 cut(s) | 352, 493, 1101 |
| BstHHI | GCGC | 1 cut(s) | 1352 |
| BstKTI | GATC | 3 cut(s) | 21, 1006, 1315 |
| BstMAI | GTCTC | 1 cut(s) | 1791 |
| BstMBI | GATC | 3 cut(s) | 18, 1003, 1312 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 244, 1061, 1301, 1349 |
| BstNI | CCWGG | 2 cut(s) | 1052, 1386 |
| BstNSI | RCATGY | 3 cut(s) | 55, 118, 911 |
| BstPI | GGTNACC | 1 cut(s) | 1239 |
| BstSCI | CCNGG | 3 cut(s) | 1050, 1090, 1384 |
| BstSFI | CTRYAG | 3 cut(s) | 407, 921, 966 |
| BstSLI | GKGCMC | 1 cut(s) | 700 |
| BstV1I | GCAGC | 8 cut(s) | 95, 302, 393, 421, 1096, 1220, 1234, 1340 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 537 |
| BstZ17I | GTATAC | 1 cut(s) | 1754 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1668 |
| BsuRI | GGCC | 7 cut(s) | 436, 648, 1117, 1151, 1304, 1356, 1602 |
| BtgI | CCRYGG | 1 cut(s) | 649 |
| BtgZI | GCGATG | 1 cut(s) | 741 |
| BtrI | CACGTC | 1 cut(s) | 663 |
| BtsCI | GGATG | 3 cut(s) | 352, 493, 1101 |
| BtsI | GCAGTG | 1 cut(s) | 918 |
| BtsIMutI | CAGTG | 2 cut(s) | 918, 1656 |
| BveI | ACCTGC | 1 cut(s) | 1252 |
| Cac8I | GCNNGC | 5 cut(s) | 116, 865, 1011, 1297, 1354 |
| CfoI | GCGC | 1 cut(s) | 1352 |
| Cfr13I | GGNCC | 5 cut(s) | 434, 735, 1043, 1088, 1601 |
| Csp6I | GTAC | 3 cut(s) | 196, 518, 1173 |
| CviQI | GTAC | 3 cut(s) | 196, 518, 1173 |
| DdeI | CTNAG | 5 cut(s) | 1146, 1196, 1569, 1668, 1764 |
| DpnI | GATC | 3 cut(s) | 20, 1005, 1314 |
| DpnII | GATC | 3 cut(s) | 18, 1003, 1312 |
| DraIII | CACNNNGTG | 1 cut(s) | 274 |
| EaeI | YGGCCR | 1 cut(s) | 1302 |
| Eam1104I | CTCTTC | 1 cut(s) | 312 |
| EarI | CTCTTC | 1 cut(s) | 312 |
| Ecl136II | GAGCTC | 1 cut(s) | 1224 |
| Eco130I | CCWWGG | 2 cut(s) | 649, 1017 |
| Eco24I | GRGCYC | 2 cut(s) | 1226, 1392 |
| Eco32I | GATATC | 1 cut(s) | 1461 |
| Eco47I | GGWCC | 3 cut(s) | 735, 1043, 1088 |
| Eco53kI | GAGCTC | 1 cut(s) | 1224 |
| Eco57I | CTGAAG | 1 cut(s) | 1299 |
| Eco81I | CCTNAGG | 1 cut(s) | 1668 |
| Eco91I | GGTNACC | 1 cut(s) | 1239 |
| EcoICRI | GAGCTC | 1 cut(s) | 1224 |
| EcoO109I | RGGNCCY | 2 cut(s) | 434, 735 |
| EcoO65I | GGTNACC | 1 cut(s) | 1239 |
| EcoRII | CCWGG | 2 cut(s) | 1050, 1384 |
| EcoRV | GATATC | 1 cut(s) | 1461 |
| EcoT14I | CCWWGG | 2 cut(s) | 649, 1017 |
| EcoT22I | ATGCAT | 1 cut(s) | 265 |
| EcoT38I | GRGCYC | 2 cut(s) | 1226, 1392 |
| ErhI | CCWWGG | 2 cut(s) | 649, 1017 |
| FaqI | GGGAC | 4 cut(s) | 435, 577, 721, 1074 |
| FauI | CCCGC | 1 cut(s) | 554 |
| FbaI | TGATCA | 2 cut(s) | 1003, 1312 |
| FblI | GTMKAC | 1 cut(s) | 1753 |
| FokI | GGATG | 3 cut(s) | 339, 480, 1088 |
| FriOI | GRGCYC | 2 cut(s) | 1226, 1392 |
| FspBI | CTAG | 4 cut(s) | 59, 98, 425, 1106 |
| GlaI | GCGC | 1 cut(s) | 1351 |
| GsaI | CCCAGC | 2 cut(s) | 1607, 1743 |
| GsuI | CTGGAG | 3 cut(s) | 513, 615, 696 |
| HaeIII | GGCC | 7 cut(s) | 436, 648, 1117, 1151, 1304, 1356, 1602 |
| HapII | CCGG | 2 cut(s) | 899, 1092 |
| HhaI | GCGC | 1 cut(s) | 1352 |
| Hin6I | GCGC | 1 cut(s) | 1350 |
| HinP1I | GCGC | 1 cut(s) | 1350 |
| HincII | GTYRAC | 5 cut(s) | 637, 850, 1363, 1693, 1804 |
| HindII | GTYRAC | 5 cut(s) | 637, 850, 1363, 1693, 1804 |
| HindIII | AAGCTT | 1 cut(s) | 581 |
| HinfI | GANTC | 6 cut(s) | 92, 710, 841, 1142, 1503, 1553 |
| HpaI | GTTAAC | 3 cut(s) | 1363, 1693, 1804 |
| HpaII | CCGG | 2 cut(s) | 899, 1092 |
| HphI | GGTGA | 7 cut(s) | 458, 940, 1013, 1184, 1233, 1462, 1574 |
| Hpy166II | GTNNAC | 8 cut(s) | 637, 698, 850, 1285, 1363, 1693, 1754, 1804 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 1572 |
| Hpy188III | TCNNGA | 4 cut(s) | 356, 1038, 1219, 1310 |
| Hpy8I | GTNNAC | 8 cut(s) | 637, 698, 850, 1285, 1363, 1693, 1754, 1804 |
| HpyAV | CCTTC | 6 cut(s) | 443, 506, 507, 638, 746, 1377 |
| HpyCH4III | ACNGT | 3 cut(s) | 568, 1660, 1712 |
| HpyCH4IV | ACGT | 1 cut(s) | 662 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 244, 1061, 1301, 1349 |
| HpyF3I | CTNAG | 5 cut(s) | 1146, 1196, 1569, 1668, 1764 |
| HpySE526I | ACGT | 1 cut(s) | 662 |
| HspAI | GCGC | 1 cut(s) | 1350 |
| KflI | GGGWCCC | 1 cut(s) | 735 |
| KpnI | GGTACC | 1 cut(s) | 199 |
| Ksp22I | TGATCA | 2 cut(s) | 1003, 1312 |
| KspAI | GTTAAC | 3 cut(s) | 1363, 1693, 1804 |
| Kzo9I | GATC | 3 cut(s) | 18, 1003, 1312 |
| LmnI | GCTCC | 3 cut(s) | 1018, 1633, 1736 |
| Lsp1109I | GCAGC | 8 cut(s) | 95, 302, 393, 421, 1096, 1220, 1234, 1340 |
| LweI | GCATC | 3 cut(s) | 3, 942, 1110 |
| MaeI | CTAG | 4 cut(s) | 59, 98, 425, 1106 |
| MaeII | ACGT | 1 cut(s) | 662 |
| MaeIII | GTNAC | 4 cut(s) | 54, 93, 914, 1239 |
| MalI | GATC | 3 cut(s) | 20, 1005, 1314 |
| MbiI | CCGCTC | 1 cut(s) | 350 |
| MboI | GATC | 3 cut(s) | 18, 1003, 1312 |
| MboII | GAAGA | 3 cut(s) | 191, 329, 804 |
| MfeI | CAATTG | 1 cut(s) | 371 |
| MhlI | GDGCHC | 4 cut(s) | 700, 1226, 1392, 1493 |
| MlyI | GAGTC | 3 cut(s) | 101, 1512, 1562 |
| Mph1103I | ATGCAT | 1 cut(s) | 265 |
| MseI | TTAA | 7 cut(s) | 603, 741, 1254, 1362, 1634, 1692, 1803 |
| MslI | CAYNNNNRTG | 4 cut(s) | 705, 890, 1197, 1658 |
| MspA1I | CMGCKG | 2 cut(s) | 561, 674 |
| MspCI | CTTAAG | 1 cut(s) | 1633 |
| MspI | CCGG | 2 cut(s) | 899, 1092 |
| MspR9I | CCNGG | 3 cut(s) | 1052, 1092, 1386 |
| MunI | CAATTG | 1 cut(s) | 371 |
| Mva1269I | GAATGC | 1 cut(s) | 1795 |
| MvaI | CCWGG | 2 cut(s) | 1052, 1386 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 244, 1061, 1301, 1349 |
| NciI | CCSGG | 1 cut(s) | 1092 |
| NcoI | CCATGG | 1 cut(s) | 649 |
| NdeII | GATC | 3 cut(s) | 18, 1003, 1312 |
| NlaIV | GGNNCC | 6 cut(s) | 197, 592, 736, 737, 1090, 1629 |
| NmeAIII | GCCGAG | 1 cut(s) | 1280 |
| NmuCI | GTSAC | 3 cut(s) | 54, 93, 1239 |
| NsiI | ATGCAT | 1 cut(s) | 265 |
| NspI | RCATGY | 3 cut(s) | 55, 118, 911 |
| OliI | CACNNNNGTG | 1 cut(s) | 1197 |
| PaeI | GCATGC | 1 cut(s) | 118 |
| PaqCI | CACCTGC | 1 cut(s) | 1252 |
| PasI | CCCWGGG | 1 cut(s) | 1385 |
| PciI | ACATGT | 2 cut(s) | 51, 907 |
| PctI | GAATGC | 1 cut(s) | 1795 |
| PfeI | GAWTC | 3 cut(s) | 710, 841, 1142 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 274 |
| PleI | GAGTC | 3 cut(s) | 100, 1511, 1561 |
| PpsI | GAGTC | 3 cut(s) | 100, 1511, 1561 |
| PpuMI | RGGWCCY | 1 cut(s) | 735 |
| PscI | ACATGT | 2 cut(s) | 51, 907 |
| Psp124BI | GAGCTC | 1 cut(s) | 1226 |
| Psp5II | RGGWCCY | 1 cut(s) | 735 |
| Psp6I | CCWGG | 2 cut(s) | 1050, 1384 |
| PspEI | GGTNACC | 1 cut(s) | 1239 |
| PspFI | CCCAGC | 2 cut(s) | 1603, 1739 |
| PspGI | CCWGG | 2 cut(s) | 1050, 1384 |
| PspN4I | GGNNCC | 6 cut(s) | 197, 592, 736, 737, 1090, 1629 |
| PspPI | GGNCC | 5 cut(s) | 434, 735, 1043, 1088, 1601 |
| PspPPI | RGGWCCY | 1 cut(s) | 735 |
| PstI | CTGCAG | 2 cut(s) | 411, 925 |
| PvuII | CAGCTG | 1 cut(s) | 674 |
| RsaI | GTAC | 3 cut(s) | 197, 519, 1174 |
| RsaNI | GTAC | 3 cut(s) | 196, 518, 1173 |
| RseI | CAYNNNNRTG | 4 cut(s) | 705, 890, 1197, 1658 |
| SacI | GAGCTC | 1 cut(s) | 1226 |
| SaqAI | TTAA | 7 cut(s) | 603, 741, 1254, 1362, 1634, 1692, 1803 |
| Sau3AI | GATC | 3 cut(s) | 18, 1003, 1312 |
| Sau96I | GGNCC | 5 cut(s) | 434, 735, 1043, 1088, 1601 |
| SchI | GAGTC | 3 cut(s) | 101, 1512, 1562 |
| ScrFI | CCNGG | 3 cut(s) | 1052, 1092, 1386 |
| SduI | GDGCHC | 4 cut(s) | 700, 1226, 1392, 1493 |
| SfaNI | GCATC | 3 cut(s) | 3, 942, 1110 |
| SfcI | CTRYAG | 3 cut(s) | 407, 921, 966 |
| SinI | GGWCC | 3 cut(s) | 735, 1043, 1088 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 705, 890, 1197, 1658 |
| SmlI | CTYRAG | 3 cut(s) | 239, 1217, 1633 |
| SmoI | CTYRAG | 3 cut(s) | 239, 1217, 1633 |
| SpeI | ACTAGT | 1 cut(s) | 58 |
| SphI | GCATGC | 1 cut(s) | 118 |
| SsiI | CCGC | 4 cut(s) | 80, 348, 561, 1725 |
| SspI | AATATT | 2 cut(s) | 483, 1068 |
| SspMI | CTAG | 4 cut(s) | 59, 98, 425, 1106 |
| SstI | GAGCTC | 1 cut(s) | 1226 |
| StyD4I | CCNGG | 3 cut(s) | 1050, 1090, 1384 |
| StyI | CCWWGG | 2 cut(s) | 649, 1017 |
| TaaI | ACNGT | 3 cut(s) | 568, 1660, 1712 |
| TaiI | ACGT | 1 cut(s) | 665 |
| TauI | GCSGC | 2 cut(s) | 83, 1727 |
| TfiI | GAWTC | 3 cut(s) | 710, 841, 1142 |
| Tru1I | TTAA | 7 cut(s) | 603, 741, 1254, 1362, 1634, 1692, 1803 |
| Tru9I | TTAA | 7 cut(s) | 603, 741, 1254, 1362, 1634, 1692, 1803 |
| TscAI | CASTG | 2 cut(s) | 925, 1663 |
| TseFI | GTSAC | 3 cut(s) | 54, 93, 1239 |
| TseI | GCWGC | 8 cut(s) | 83, 290, 406, 409, 1109, 1208, 1247, 1328 |
| Tsp45I | GTSAC | 3 cut(s) | 54, 93, 1239 |
| TspDTI | ATGAA | 9 cut(s) | 31, 87, 192, 489, 525, 657, 702, 878, 1023 |
| TspRI | CASTG | 2 cut(s) | 925, 1663 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 274 |
| Vha464I | CTTAAG | 1 cut(s) | 1633 |
| VneI | GTGCAC | 1 cut(s) | 696 |
| VpaK11BI | GGWCC | 3 cut(s) | 735, 1043, 1088 |
| XapI | RAATTY | 3 cut(s) | 465, 682, 949 |
| XceI | RCATGY | 3 cut(s) | 55, 118, 911 |
| XmiI | GTMKAC | 1 cut(s) | 1753 |
| XspI | CTAG | 4 cut(s) | 59, 98, 425, 1106 |
| Zsp2I | ATGCAT | 1 cut(s) | 265 |