Rh7DG187500

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000302
Physical Location & Seq
Reverse (-)
17363424 .. 17364674
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG187500.1

Sequence Viewer

Length: 459 bp
ATGCCCTCACCTGAGTGGCATTGCAGCTTTGCTCAAAAGAGCTCACACCCTGATTGGTCACCAGCTGCCATTAAGTCTGCAATTTTGACAACTGCTCAAGTACTAAACCTCGGCGTCAAGCCCATTGTGGATGAAACACTCGGTCCAGCTGACATCTTTGCCACTGGTGCAGCCCATGTTAACCCTTCAAGAGCAGATGACCGCGGCCTAATCTTTGACTTAGAACCAGCGGATTACATCCCCTATCTATGCGGTTTGAATTACAGTGACGATCAGATACAGATCATCACCCAACAAACAGTGAAATGCTCTCAAAATCGGCATTTTACAGTGAAACAAATCGAAGTCTTTGCCATCTTCAGTGAGCACTCCTCAGGTTCACTCATGCACTTAAGAACATCCAACAGGCCAGCCCCAATCGAGGATAATATGTCGAAAGCCCATGTGAGCTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

152

Amino Acids

16.7

Weight (kDa)

5.72

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 4 cut(s) 202, 204, 230, 252
AcuI CTGAAG 1 cut(s) 343
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 421
AflII CTTAAG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 189, 259
AleI CACNNNNGTG 1 cut(s) 13
AluBI AGCT 5 cut(s) 27, 42, 65, 149, 450
AluI AGCT 5 cut(s) 27, 42, 65, 149, 450
Alw21I GWGCWC 2 cut(s) 44, 369
AoxI GGCC 2 cut(s) 205, 407
ApeKI GCWGC 3 cut(s) 24, 65, 170
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 51, 280
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 373
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 2 cut(s) 44, 369
BbvI GCAGC 3 cut(s) 36, 52, 182
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BfrI CTTAAG 1 cut(s) 391
BisI GCNGC 4 cut(s) 25, 66, 171, 205
BlsI GCNGC 4 cut(s) 26, 67, 172, 206
BmcAI AGTACT 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpuEI CTTGAG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 109, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 169
Bse21I CCTNAGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 109, 202
BseGI GGATG 3 cut(s) 136, 237, 398
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 3 cut(s) 36, 52, 182
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 207, 409
BsiHKAI GWGCWC 2 cut(s) 44, 369
BslI CCNNNNNNNGG 1 cut(s) 421
BsnI GGCC 2 cut(s) 207, 409
Bsp1286I GDGCHC 2 cut(s) 44, 369
Bsp143I GATC 2 cut(s) 271, 282
BspACI CCGC 4 cut(s) 202, 204, 230, 252
BspANI GGCC 2 cut(s) 207, 409
BspCNI CTCAG 2 cut(s) 4, 386
BspFNI CGCG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 455
BspTI CTTAAG 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 109, 202
BssMI GATC 2 cut(s) 271, 282
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 266, 301, 331
BstACI GRCGYC 1 cut(s) 114
BstAFI CTTAAG 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 12, 220, 373
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 57
BstF5I GGATG 3 cut(s) 136, 237, 398
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 2 cut(s) 274, 285
BstMBI GATC 2 cut(s) 271, 282
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 57
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 36, 52, 182
Bsu36I CCTNAGG 1 cut(s) 373
BsuRI GGCC 2 cut(s) 207, 409
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 3 cut(s) 136, 237, 398
BtsIMutI CAGTG 5 cut(s) 162, 271, 306, 336, 367
Cac8I GCNNGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 143
Cfr42I CCGCGG 1 cut(s) 205
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 101
CviAII CATG 4 cut(s) 176, 385, 443, 456
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 12, 220, 373
DpnI GATC 2 cut(s) 273, 284
DpnII GATC 2 cut(s) 271, 282
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 343
Eco81I CCTNAGG 1 cut(s) 373
Eco91I GGTNACC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 4 cut(s) 179, 388, 446, 459
FaiI YATR 6 cut(s) 177, 250, 386, 431, 444, 457
FatI CATG 4 cut(s) 175, 384, 442, 455
Fnu4HI GCNGC 4 cut(s) 25, 66, 171, 205
FokI GGATG 3 cut(s) 143, 224, 385
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 25, 66, 171, 205
GluI GCNGC 4 cut(s) 25, 66, 171, 205
HaeIII GGCC 2 cut(s) 207, 409
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 179, 388, 446, 459
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 2 cut(s) 51, 280
Hpy166II GTNNAC 2 cut(s) 181, 380
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 2 cut(s) 189, 456
Hpy8I GTNNAC 2 cut(s) 181, 380
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 3 cut(s) 266, 301, 331
HpyCH4V TGCA 4 cut(s) 24, 80, 170, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 12, 220, 373
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 179, 388, 446, 459
KspAI GTTAAC 1 cut(s) 181
KspI CCGCGG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 271, 282
LpnPI CCDG 9 cut(s) 24, 63, 75, 150, 159, 240, 360, 391, 423
Lsp1109I GCAGC 3 cut(s) 36, 52, 182
MaeIII GTNAC 2 cut(s) 57, 266
MalI GATC 2 cut(s) 273, 284
MboI GATC 2 cut(s) 271, 282
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 44, 369
MluCI AATT 2 cut(s) 81, 259
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 16, 119, 382, 415
MseI TTAA 3 cut(s) 72, 180, 392
MslI CAYNNNNRTG 1 cut(s) 13
MspA1I CMGCKG 4 cut(s) 65, 149, 204, 230
MspCI CTTAAG 1 cut(s) 391
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 271, 282
NlaIII CATG 4 cut(s) 179, 388, 446, 459
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 57, 266
OliI CACNNNNGTG 1 cut(s) 13
PagI TCATGA 1 cut(s) 455
PkrI GCNGC 4 cut(s) 26, 67, 172, 206
Psp124BI GAGCTC 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 65, 149
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 13
SacI GAGCTC 1 cut(s) 44
SacII CCGCGG 1 cut(s) 205
SaqAI TTAA 3 cut(s) 72, 180, 392
SatI GCNGC 4 cut(s) 25, 66, 171, 205
Sau3AI GATC 2 cut(s) 271, 282
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 102
SduI GDGCHC 2 cut(s) 44, 369
SetI ASST 8 cut(s) 13, 29, 44, 67, 111, 151, 379, 452
Sfr303I CCGCGG 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 205
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 96, 391
SmoI CTYRAG 2 cut(s) 96, 391
Sse9I AATT 2 cut(s) 81, 259
SsiI CCGC 4 cut(s) 202, 204, 230, 252
SstI GAGCTC 1 cut(s) 44
TaaI ACNGT 3 cut(s) 266, 301, 331
TaqI TCGA 3 cut(s) 342, 420, 434
TaqII GACCGA 1 cut(s) 131
TasI AATT 2 cut(s) 81, 259
TatI WGTACW 1 cut(s) 100
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 3 cut(s) 72, 180, 392
Tru9I TTAA 3 cut(s) 72, 180, 392
TscAI CASTG 5 cut(s) 169, 271, 306, 336, 367
TseFI GTSAC 2 cut(s) 57, 266
TseI GCWGC 3 cut(s) 24, 65, 170
Tsp45I GTSAC 2 cut(s) 57, 266
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 5 cut(s) 169, 271, 306, 336, 367
Vha464I CTTAAG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.