Rh7DG187800

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000302
Physical Location & Seq
Reverse (-)
17365572 .. 17366215
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG187800.1

Sequence Viewer

Length: 453 bp
ATGAAGCAACGAATGGTTTATGCATACCACCATGTGGCGACTGGCATTGCAGCAAAGCTGACTGTAGAGGAAGTAAAAGAAATGGAGACAAAAGATGGGTTTATGTCCGCTCATCTAGATAGGATTCTGCCTTTGCACACCACCCATAGTCCGAACTTCTTGGGGTTATACGAAGGATTGGGACTTTGGAAAGGGTCTAATTATGGTGAAGGTGTAATTATTGGAGTTTTGGACTCTAGGATAACACCAGGTCATCCCTCATTCAGCGATGAAGGAGTGCCACCTCCTCCGGCTAAATGGAAAGGTAAGTGTGATTTCAACGGGTCATTCTGCAATAACAAGCTTATTGGTGCCAGAAGTTTCCGAGGTGGGCAAACTACTATAGAGATCCACCTATTGATGTTGATGGCCATGGTACCCACACATCCAGCACAGCCGGAGGAAACTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

150

Amino Acids

16.51

Weight (kDa)

6.7

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 2 cut(s) 350, 415
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 408
AdeI CACNNNGTG 1 cut(s) 34
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 58, 343
AluI AGCT 2 cut(s) 58, 343
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 382
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 50
Asp718I GGTACC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 218
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 2 cut(s) 350, 415
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 89, 400
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 2 cut(s) 116, 237
BfmI CTRYAG 2 cut(s) 63, 381
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 352, 417
BmrFI CCNGG 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 364, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 364, 411
BseGI GGATG 2 cut(s) 253, 424
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 410
BshNI GGYRCC 2 cut(s) 350, 415
BsiSI CCGG 2 cut(s) 290, 437
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 410
Bsp143I GATC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 352, 417
BspPI GGATC 1 cut(s) 382
BspT107I GGYRCC 2 cut(s) 350, 415
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 364, 411
BssMI GATC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 253, 424
BstKTI GATC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 63, 381
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 253, 424
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 1 cut(s) 416
CviAII CATG 2 cut(s) 32, 412
CviJI RGCY 5 cut(s) 58, 293, 343, 410, 436
CviKI_1 RGCY 5 cut(s) 58, 293, 343, 410, 436
CviQI GTAC 1 cut(s) 416
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
DraIII CACNNNGTG 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 2 cut(s) 35, 415
FaiI YATR 9 cut(s) 21, 25, 33, 104, 147, 169, 204, 383, 413
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 31, 411
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 240, 411
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 116, 237
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 410
HapII CCGG 2 cut(s) 290, 437
Hin1II CATG 2 cut(s) 35, 415
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 2 cut(s) 124, 233
HpaII CCGG 2 cut(s) 290, 437
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 153, 365
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 167, 203, 266
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 23, 50, 136, 333
Hsp92II CATG 2 cut(s) 35, 415
KpnI GGTACC 1 cut(s) 419
Kzo9I GATC 1 cut(s) 387
LpnPI CCDG 6 cut(s) 27, 234, 261, 303, 367, 441
Lsp1109I GCAGC 1 cut(s) 62
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 2 cut(s) 116, 237
MalI GATC 1 cut(s) 389
MbiI CCGCTC 1 cut(s) 110
MboI GATC 1 cut(s) 387
MflI RGATCY 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 2 cut(s) 199, 216
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 61, 268, 294, 297, 359, 433
Mox20I TGGCCA 1 cut(s) 410
Mph1103I ATGCAT 1 cut(s) 25
MscI TGGCCA 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 410
MspI CCGG 2 cut(s) 290, 437
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 411
NdeII GATC 1 cut(s) 387
NlaIII CATG 2 cut(s) 35, 415
NlaIV GGNNCC 2 cut(s) 352, 417
NsiI ATGCAT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 352, 417
PsuI RGATCY 1 cut(s) 387
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 387
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 249
SetI ASST 8 cut(s) 60, 214, 253, 286, 307, 345, 370, 396
SexAI ACCWGGT 1 cut(s) 247
SfcI CTRYAG 2 cut(s) 63, 381
Sse9I AATT 2 cut(s) 199, 216
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 116, 237
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 64
TasI AATT 2 cut(s) 199, 216
TfiI GAWTC 1 cut(s) 124
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 17, 285
Van91I CCANNNNNTGG 1 cut(s) 34
XbaI TCTAGA 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XspI CTAG 2 cut(s) 116, 237
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.