Rmu_sc0010281.1_g000004

subtilisin-like protease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010281.1
Physical Location & Seq
Reverse (-)
9805 .. 11311
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010281.1_g000004.1.cds

Sequence Viewer

Length: 450 bp
atgcatacctctaagtgtttgcacaaatttgaaattggagacagagaagtagatatggtggcctctgggaaggtggctcaggtcggcaaccgatatctcagccaccggtgcgggccatgtcaatccatcaaaggcgacggacctaggaggctaggactaatctatgatattcaacctgatgattatattccatatctttgtggcttgggctacaacgatacgggagtcagtatcctcgcgcacagaccaataaagtgctcaaaggtatcaaccatccctgaaggagagctgaactacccttcattttctgtcaagcttggaccatctcagacattcacaagaactgtgacaaatgttgatgccccatattccacttattcggtcaaggtatatgcaccactaggagcctatgtgactgtcaacccagcacactttactttacagaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

16.43

Weight (kDa)

8.8

Isoelectric Point (pI)

24.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 239
AciI CCGC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 300
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 2 cut(s) 32, 173
AluBI AGCT 2 cut(s) 289, 316
AluI AGCT 2 cut(s) 289, 316
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 2 cut(s) 60, 113
ApoI RAATTY 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 143
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 3 cut(s) 113, 140, 320
AvaII GGWCC 2 cut(s) 140, 320
AvrII CCTAGG 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
Bbv12I GWGCWC 1 cut(s) 260
BccI CCATC 3 cut(s) 134, 281, 331
BciVI GTATCC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 3 cut(s) 144, 152, 401
BfuI GTATCC 1 cut(s) 242
BlnI CCTAGG 1 cut(s) 143
Bme18I GGWCC 2 cut(s) 140, 320
BmgT120I GGNCC 3 cut(s) 113, 140, 320
BmiI GGNNCC 1 cut(s) 406
BmsI GCATC 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bse118I RCCGGY 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 92, 112, 341
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 2 cut(s) 62, 115
BshTI ACCGGT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 33
BsnI GGCC 2 cut(s) 62, 115
Bsp1286I GDGCHC 1 cut(s) 260
BspACI CCGC 1 cut(s) 111
BspANI GGCC 2 cut(s) 62, 115
BspCNI CTCAG 3 cut(s) 91, 111, 340
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 346, 418
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 12, 78, 98, 327
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstUI CGCG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 62, 115
BtsCI GGATG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 113, 140, 320
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 1 cut(s) 117
DdeI CTNAG 4 cut(s) 12, 78, 98, 327
Eco130I CCWWGG 1 cut(s) 143
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 140, 320
Eco57I CTGAAG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 1 cut(s) 120
FatI CATG 1 cut(s) 116
FauI CCCGC 1 cut(s) 104
FokI GGATG 1 cut(s) 260
FspBI CTAG 3 cut(s) 144, 152, 401
GlaI GCGC 1 cut(s) 240
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 2 cut(s) 62, 115
HapII CCGG 1 cut(s) 106
HhaI GCGC 1 cut(s) 241
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 225
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 3 cut(s) 64, 275, 309
HpyCH4III ACNGT 2 cut(s) 346, 418
HpyCH4V TGCA 3 cut(s) 4, 22, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 4 cut(s) 12, 78, 98, 327
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 6 cut(s) 51, 65, 119, 189, 291, 438
LweI GCATC 1 cut(s) 349
MaeI CTAG 3 cut(s) 144, 152, 401
MaeIII GTNAC 2 cut(s) 346, 412
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 26, 33
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 5 cut(s) 19, 73, 141, 245, 438
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 108
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 346, 412
NsiI ATGCAT 1 cut(s) 6
PinAI ACCGGT 1 cut(s) 105
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 3 cut(s) 113, 140, 320
Sau96I GGNCC 3 cut(s) 113, 140, 320
SchI GAGTC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 1 cut(s) 349
SgrAI CRCCGGYG 1 cut(s) 105
SinI GGWCC 2 cut(s) 140, 320
Sse9I AATT 2 cut(s) 26, 33
SsiI CCGC 1 cut(s) 111
SspMI CTAG 3 cut(s) 144, 152, 401
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 346, 418
TaqII GACCGA 1 cut(s) 370
TasI AATT 2 cut(s) 26, 33
TseFI GTSAC 2 cut(s) 346, 412
Tsp45I GTSAC 2 cut(s) 346, 412
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 140, 320
XapI RAATTY 1 cut(s) 26
XmaJI CCTAGG 1 cut(s) 143
XspI CTAG 3 cut(s) 144, 152, 401
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.