Rmu_co8411041.1_g000001

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8411041.1
OG0000302
Physical Location & Seq
Forward (+)
1 .. 1340
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8411041.1_g000001.1.cds

Sequence Viewer

Length: 1340 bp
agaccatccttcatttagtgatgaaggagtaccacatcctccagctaaatggaaaggcaagtgtgatttcagtgggacagtctgcaataacaagcttatcggtgccagaagttttaatggtggaaaaactactggaggccctccagttgacgatgaaggccatggaactcaaacgtcaagcacagctggaggaaattttgtgaaaggtgccagcgtgtttggaatggccaacggcacagcaactggcatggcacctcatgctcacttggcaatttataaagtatgctcagacgagggttgttctgaatcagacattatagctgctatggacactgctgttgatgatggcgttgatgtgctatccctttcactcggtggtggctcagcttattattatgctgatggaattgcagtcggcgcatttggagcaattcagaagggaatctttgtcagctgttcagctggaaatgctggccctcactataagactttatccaatgaagctccatggattctcttggttggagcaagcaccattgacaaaaacataagagcaacaacaaagcttggaaacgggcaagaatatgacggggaatcactattccagcctacatattttggttcaaaactgttgcctcttgtttatgcaggtgaacatagcaatgattcatcagctttgtgtgacgaaagatctcttgaaaatgttgaaggcaaagtagtggtctatgaggtaggtggaggaattggaagaattgcacaaggggtaaaagtgaaaagagctggtggtgttgccatgattcttgtcaaccaagactttgctggctataccaccatagcagacgctcacgtgcttccgacaacacatgtgagttacgctacaggggtgagtatcaaaacctatataaactcaacctcaactcctacagctacaatcttattcaaaggcactatcatcagtgatcagcttgctcccaaggttgctttcttttcatcaagaggaccaaacctggcaagcccaacaattttgaaacctgacattattggtcctggtgtgagcatcctagcagcgtggcctttttcggtggataataccacagaatctaaggccacatttgacattatttcaggtacttcaatgtcatgccctcacctaagtggcattacagccttgctcaagagctcacaccctgactggtcaccagctgccattaagtctgcaatgatgacaactgctgatgtactaaacctcgctggctcgaccattcttgatcaaacacttcttgcagcagacctgtttgccatcagcgcaggccatgttaacccttcaaaagcaaatgacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

446

Amino Acids

45.96

Weight (kDa)

5.51

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 277
AarI CACCTGC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 639
AccB1I GGYRCC 3 cut(s) 102, 207, 251
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 194
AcvI CACGTG 1 cut(s) 848
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 3 cut(s) 31, 1130, 1240
AflIII ACRYGT 1 cut(s) 863
AgsI TTSAA 7 cut(s) 625, 699, 708, 941, 1028, 1135, 1327
AjnI CCWGG 2 cut(s) 1006, 1046
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
AleI CACNNNNGTG 1 cut(s) 1153
Alw21I GWGCWC 1 cut(s) 1182
AlwNI CAGNNNCTG 1 cut(s) 243
AoxI GGCC 7 cut(s) 137, 158, 226, 473, 1071, 1105, 1310
ApeKI GCWGC 4 cut(s) 321, 1065, 1203, 1284
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
AspLEI GCGC 2 cut(s) 420, 1308
AspS9I GGNCC 4 cut(s) 138, 474, 999, 1044
AsuHPI GGTGA 4 cut(s) 663, 896, 1140, 1189
AvaII GGWCC 2 cut(s) 999, 1044
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 3 cut(s) 102, 207, 251
BanII GRGCYC 1 cut(s) 1182
BbrPI CACGTG 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 1182
BbvI GCAGC 4 cut(s) 308, 1077, 1190, 1296
BccI CCATC 4 cut(s) 13, 339, 396, 1308
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 1008, 1048
BclI TGATCA 2 cut(s) 959, 1268
BfaI CTAG 1 cut(s) 1062
BfmI CTRYAG 2 cut(s) 877, 922
BfuAI ACCTGC 1 cut(s) 639
BglII AGATCT 1 cut(s) 690
BisI GCNGC 4 cut(s) 322, 1066, 1204, 1285
BlpI GCTNAGC 1 cut(s) 383
BlsI GCNGC 4 cut(s) 323, 1067, 1205, 1286
Bme1390I CCNGG 2 cut(s) 1008, 1048
Bme18I GGWCC 2 cut(s) 999, 1044
BmgT120I GGNCC 4 cut(s) 138, 474, 999, 1044
BmiI GGNNCC 3 cut(s) 104, 209, 253
BmrFI CCNGG 2 cut(s) 1008, 1048
BmsI GCATC 1 cut(s) 1066
BpmI CTGGAG 4 cut(s) 25, 127, 154, 208
Bpu1102I GCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 1158
BsaAI YACGTR 1 cut(s) 848
BsaJI CCNNGG 3 cut(s) 161, 507, 973
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bse1I ACTGG 4 cut(s) 137, 144, 248, 1197
Bse3DI GCAATG 2 cut(s) 668, 1225
BseBI CCWGG 2 cut(s) 1008, 1048
BseDI CCNNGG 3 cut(s) 161, 507, 973
BseGI GGATG 3 cut(s) 5, 35, 1057
BseMI GCAATG 2 cut(s) 668, 1225
BseMII CTCAG 2 cut(s) 301, 397
BseNI ACTGG 4 cut(s) 137, 144, 248, 1197
BseXI GCAGC 4 cut(s) 308, 1077, 1190, 1296
BshFI GGCC 7 cut(s) 139, 160, 228, 475, 1073, 1107, 1312
BshNI GGYRCC 3 cut(s) 102, 207, 251
BsiHKAI GWGCWC 1 cut(s) 1182
BslFI GGGAC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 7 cut(s) 139, 160, 228, 475, 1073, 1107, 1312
Bsp1286I GDGCHC 1 cut(s) 1182
Bsp143I GATC 3 cut(s) 690, 959, 1268
Bsp1720I GCTNAGC 1 cut(s) 383
Bsp19I CCATGG 2 cut(s) 161, 507
BspANI GGCC 7 cut(s) 139, 160, 228, 475, 1073, 1107, 1312
BspCNI CTCAG 2 cut(s) 300, 396
BspLI GGNNCC 3 cut(s) 104, 209, 253
BspMI ACCTGC 1 cut(s) 639
BspT107I GGYRCC 3 cut(s) 102, 207, 251
BsrDI GCAATG 2 cut(s) 668, 1225
BsrI ACTGG 4 cut(s) 137, 144, 248, 1197
BssECI CCNNGG 3 cut(s) 161, 507, 973
BssMI GATC 3 cut(s) 690, 959, 1268
BssT1I CCWWGG 3 cut(s) 161, 507, 973
Bst2UI CCWGG 2 cut(s) 1008, 1048
Bst4CI ACNGT 2 cut(s) 80, 631
BstAPI GCANNNNNTGC 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 8 cut(s) 212, 473, 530, 821, 967, 1013, 1253, 1310
BstDEI CTNAG 4 cut(s) 287, 383, 1102, 1152
BstDSI CCRYGG 2 cut(s) 161, 507
BstEII GGTNACC 1 cut(s) 1195
BstF5I GGATG 3 cut(s) 5, 35, 1057
BstHHI GCGC 2 cut(s) 420, 1308
BstKTI GATC 3 cut(s) 693, 962, 1271
BstMBI GATC 3 cut(s) 690, 959, 1268
BstMWI GCNNNNNNNGC 6 cut(s) 258, 267, 417, 426, 468, 1305
BstNI CCWGG 2 cut(s) 1008, 1048
BstNSI RCATGY 1 cut(s) 867
BstPI GGTNACC 1 cut(s) 1195
BstSCI CCNGG 2 cut(s) 1006, 1046
BstSFI CTRYAG 2 cut(s) 877, 922
BstV1I GCAGC 4 cut(s) 308, 1077, 1190, 1296
BstX2I RGATCY 1 cut(s) 690
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 690
BsuRI GGCC 7 cut(s) 139, 160, 228, 475, 1073, 1107, 1312
BtgI CCRYGG 2 cut(s) 161, 507
BtsCI GGATG 3 cut(s) 5, 35, 1057
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 77, 331, 962
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 8 cut(s) 212, 473, 530, 821, 967, 1013, 1253, 1310
CaiI CAGNNNCTG 1 cut(s) 243
CfoI GCGC 2 cut(s) 420, 1308
Cfr13I GGNCC 4 cut(s) 138, 474, 999, 1044
CseI GACGC 1 cut(s) 849
Csp6I GTAC 3 cut(s) 30, 1129, 1239
CviAII CATG 8 cut(s) 162, 248, 258, 508, 794, 864, 1141, 1314
CviQI GTAC 3 cut(s) 30, 1129, 1239
DdeI CTNAG 4 cut(s) 287, 383, 1102, 1152
DpnI GATC 3 cut(s) 692, 961, 1270
DpnII GATC 3 cut(s) 690, 959, 1268
DraIII CACNNNGTG 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 1180
Eco130I CCWWGG 3 cut(s) 161, 507, 973
Eco24I GRGCYC 1 cut(s) 1182
Eco47I GGWCC 2 cut(s) 999, 1044
Eco53kI GAGCTC 1 cut(s) 1180
Eco72I CACGTG 1 cut(s) 848
Eco91I GGTNACC 1 cut(s) 1195
EcoICRI GAGCTC 1 cut(s) 1180
EcoO109I RGGNCCY 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 1195
EcoRII CCWGG 2 cut(s) 1006, 1046
EcoT14I CCWWGG 3 cut(s) 161, 507, 973
EcoT38I GRGCYC 1 cut(s) 1182
ErhI CCWWGG 3 cut(s) 161, 507, 973
FaeI CATG 8 cut(s) 165, 251, 261, 511, 797, 867, 1144, 1317
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 89
FatI CATG 8 cut(s) 161, 247, 257, 507, 793, 863, 1140, 1313
FbaI TGATCA 2 cut(s) 959, 1268
Fnu4HI GCNGC 4 cut(s) 322, 1066, 1204, 1285
FokI GGATG 2 cut(s) 22, 1044
FriOI GRGCYC 1 cut(s) 1182
Fsp4HI GCNGC 4 cut(s) 322, 1066, 1204, 1285
FspBI CTAG 1 cut(s) 1062
GlaI GCGC 2 cut(s) 419, 1307
GluI GCNGC 4 cut(s) 322, 1066, 1204, 1285
GsuI CTGGAG 4 cut(s) 25, 127, 154, 208
HaeIII GGCC 7 cut(s) 139, 160, 228, 475, 1073, 1107, 1312
HgaI GACGC 1 cut(s) 849
HhaI GCGC 2 cut(s) 420, 1308
Hin1II CATG 8 cut(s) 165, 251, 261, 511, 797, 867, 1144, 1317
Hin6I GCGC 2 cut(s) 418, 1306
HinP1I GCGC 2 cut(s) 418, 1306
HincII GTYRAC 3 cut(s) 149, 806, 1319
HindII GTYRAC 3 cut(s) 149, 806, 1319
HindIII AAGCTT 2 cut(s) 93, 564
HinfI GANTC 7 cut(s) 306, 442, 512, 594, 666, 797, 1098
HpaI GTTAAC 1 cut(s) 1319
HphI GGTGA 4 cut(s) 663, 896, 1140, 1189
Hpy166II GTNNAC 4 cut(s) 149, 654, 806, 1319
Hpy188I TCNGA 5 cut(s) 290, 305, 311, 436, 856
Hpy188III TCNNGA 4 cut(s) 696, 994, 1175, 1266
Hpy8I GTNNAC 4 cut(s) 149, 654, 806, 1319
HpyAV CCTTC 6 cut(s) 18, 19, 150, 431, 702, 1333
HpyCH4III ACNGT 2 cut(s) 80, 631
HpyCH4IV ACGT 2 cut(s) 174, 847
HpyCH4V TGCA 6 cut(s) 85, 411, 648, 756, 1218, 1284
HpyF10VI GCNNNNNNNGC 6 cut(s) 258, 267, 417, 426, 468, 1305
HpyF3I CTNAG 4 cut(s) 287, 383, 1102, 1152
HpySE526I ACGT 2 cut(s) 174, 847
Hsp92II CATG 8 cut(s) 165, 251, 261, 511, 797, 867, 1144, 1317
HspAI GCGC 2 cut(s) 418, 1306
Ksp22I TGATCA 2 cut(s) 959, 1268
KspAI GTTAAC 1 cut(s) 1319
Kzo9I GATC 3 cut(s) 690, 959, 1268
LmnI GCTCC 4 cut(s) 426, 509, 525, 974
Lsp1109I GCAGC 4 cut(s) 308, 1077, 1190, 1296
LweI GCATC 1 cut(s) 1066
MaeI CTAG 1 cut(s) 1062
MaeII ACGT 2 cut(s) 174, 847
MaeIII GTNAC 3 cut(s) 681, 870, 1195
MalI GATC 3 cut(s) 692, 961, 1270
MboI GATC 3 cut(s) 690, 959, 1268
MboII GAAGA 1 cut(s) 760
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 1182
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 7 cut(s) 194, 271, 406, 430, 742, 751, 1021
MluNI TGGCCA 1 cut(s) 228
MmeI TCCRAC 2 cut(s) 503, 879
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 3 cut(s) 115, 1210, 1318
MslI CAYNNNNRTG 2 cut(s) 661, 1153
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 4 cut(s) 186, 454, 462, 1203
MspR9I CCNGG 2 cut(s) 1008, 1048
MvaI CCWGG 2 cut(s) 1008, 1048
MwoI GCNNNNNNNGC 6 cut(s) 258, 267, 417, 426, 468, 1305
NcoI CCATGG 2 cut(s) 161, 507
NdeII GATC 3 cut(s) 690, 959, 1268
NlaIII CATG 8 cut(s) 165, 251, 261, 511, 797, 867, 1144, 1317
NlaIV GGNNCC 3 cut(s) 104, 209, 253
NmuCI GTSAC 2 cut(s) 681, 1195
NspI RCATGY 1 cut(s) 867
OliI CACNNNNGTG 1 cut(s) 1153
PaqCI CACCTGC 1 cut(s) 639
PciI ACATGT 1 cut(s) 863
PfeI GAWTC 7 cut(s) 306, 442, 512, 594, 666, 797, 1098
PkrI GCNGC 4 cut(s) 323, 1067, 1205, 1286
PmaCI CACGTG 1 cut(s) 848
PmlI CACGTG 1 cut(s) 848
Ppu21I YACGTR 1 cut(s) 848
PscI ACATGT 1 cut(s) 863
PsiI TTATAA 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 1182
Psp6I CCWGG 2 cut(s) 1006, 1046
PspCI CACGTG 1 cut(s) 848
PspEI GGTNACC 1 cut(s) 1195
PspGI CCWGG 2 cut(s) 1006, 1046
PspN4I GGNNCC 3 cut(s) 104, 209, 253
PspPI GGNCC 4 cut(s) 138, 474, 999, 1044
PstNI CAGNNNCTG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 690
PvuII CAGCTG 4 cut(s) 186, 454, 462, 1203
RsaI GTAC 3 cut(s) 31, 1130, 1240
RsaNI GTAC 3 cut(s) 30, 1129, 1239
RseI CAYNNNNRTG 2 cut(s) 661, 1153
SacI GAGCTC 1 cut(s) 1182
SaqAI TTAA 3 cut(s) 115, 1210, 1318
SatI GCNGC 4 cut(s) 322, 1066, 1204, 1285
Sau3AI GATC 3 cut(s) 690, 959, 1268
Sau96I GGNCC 4 cut(s) 138, 474, 999, 1044
ScrFI CCNGG 2 cut(s) 1008, 1048
SduI GDGCHC 1 cut(s) 1182
SfaNI GCATC 1 cut(s) 1066
SfcI CTRYAG 2 cut(s) 877, 922
SinI GGWCC 2 cut(s) 999, 1044
SmiMI CAYNNNNRTG 2 cut(s) 661, 1153
SmlI CTYRAG 1 cut(s) 1173
SmoI CTYRAG 1 cut(s) 1173
Sse9I AATT 7 cut(s) 194, 271, 406, 430, 742, 751, 1021
SspMI CTAG 1 cut(s) 1062
SstI GAGCTC 1 cut(s) 1182
StyD4I CCNGG 2 cut(s) 1006, 1046
StyI CCWWGG 3 cut(s) 161, 507, 973
TaaI ACNGT 2 cut(s) 80, 631
TaiI ACGT 2 cut(s) 177, 850
TaqI TCGA 1 cut(s) 1257
TasI AATT 7 cut(s) 194, 271, 406, 430, 742, 751, 1021
TatI WGTACW 1 cut(s) 1238
TfiI GAWTC 7 cut(s) 306, 442, 512, 594, 666, 797, 1098
Tru1I TTAA 3 cut(s) 115, 1210, 1318
Tru9I TTAA 3 cut(s) 115, 1210, 1318
TscAI CASTG 3 cut(s) 77, 338, 962
TseFI GTSAC 2 cut(s) 681, 1195
TseI GCWGC 4 cut(s) 321, 1065, 1203, 1284
Tsp45I GTSAC 2 cut(s) 681, 1195
TspDTI ATGAA 5 cut(s) 37, 169, 514, 658, 979
TspRI CASTG 3 cut(s) 77, 338, 962
VpaK11BI GGWCC 2 cut(s) 999, 1044
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XspI CTAG 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.