Rmu_sc0006398.1_g000009

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006398.1
OG0000302
Physical Location & Seq
Reverse (-)
34646 .. 36171
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006398.1_g000009.1.cds

Sequence Viewer

Length: 855 bp
atggagtgccacctagctcccccggcgaaatggaaaggcaagtgcaagttcaatgggacagtgtgtaacaacaagcttattggtgcaagaaatttccaaggtgggaaagaaacaaaaggagtctctccatttgatgaagaaggccatggcactcacacctccagcacagctgccggaaactttgtgaaagcacagcacagctgccggagtctctccattggaatggcaaatggcacagcctctggcattgcaccttatgcttacttagccatctacaaggtctgcatcgaggcaggttgtgccgaaagtgacatgctagcagctcttgacactgctgttgaggacggcgtggatgtgctctcactgtccattagtgattcctcaattcctttccatcaagatgggattgctatcggcgcgtttggagcaattcaaaagggaatttttgtcagctgttcagctggaaactctggccctttatttagtgacagaaaaattccggggctggctatgctcgatcctaaaatttttagcacttcaccattgctacctcttgtttatccaggtgcaaatcccaataaccaaactgagttctgtccctcgggatctcttgtaaatgttgaaggaggaccgagcatagccagccccggaattttgaaacctgacatcattggtcctggtgttaacatcctcgttgcatggcctgtttcggtggataatgtcacaacatttaacatgattttcaggtacctcaatgtcatgcccgcacctaagcggcattgcagccttgatcaaaagttcacacccagactggtcacctgctgccatcaaatccgccattatgacaactgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

284

Amino Acids

30.02

Weight (kDa)

7.04

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 827
Acc36I ACCTGC 2 cut(s) 284, 827
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 747
AccII CGCG 1 cut(s) 419
AciI CCGC 3 cut(s) 765, 775, 835
AclWI GGATC 2 cut(s) 512, 613
AcsI RAATTY 5 cut(s) 91, 441, 495, 525, 651
AfaI GTAC 1 cut(s) 749
AgsI TTSAA 4 cut(s) 52, 434, 623, 658
AjnI CCWGG 2 cut(s) 562, 676
AluBI AGCT 7 cut(s) 17, 76, 170, 201, 323, 453, 461
AluI AGCT 7 cut(s) 17, 76, 170, 201, 323, 453, 461
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 127, 215
AlwI GGATC 2 cut(s) 512, 613
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 601
AoxI GGCC 3 cut(s) 142, 472, 701
ApeKI GCWGC 5 cut(s) 170, 201, 320, 783, 822
ApoI RAATTY 5 cut(s) 91, 441, 495, 525, 651
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 3 cut(s) 473, 629, 674
AsuC2I CCSGG 3 cut(s) 23, 501, 648
AsuHPI GGTGA 2 cut(s) 531, 808
AsuNHI GCTAGC 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 601
AvaII GGWCC 2 cut(s) 629, 674
BanI GGYRCC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 5 cut(s) 157, 188, 332, 795, 809
BccI CCATC 4 cut(s) 278, 395, 402, 834
BceAI ACGGC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 564, 678
BclI TGATCA 1 cut(s) 790
BcnI CCSGG 3 cut(s) 23, 501, 648
BcoDI GTCTC 2 cut(s) 127, 215
BfaI CTAG 2 cut(s) 14, 317
BfuAI ACCTGC 2 cut(s) 284, 827
BisI GCNGC 6 cut(s) 171, 202, 321, 776, 784, 823
BlsI GCNGC 6 cut(s) 172, 203, 322, 777, 785, 824
Bme1390I CCNGG 5 cut(s) 23, 501, 564, 648, 678
Bme18I GGWCC 2 cut(s) 629, 674
BmeT110I CYCGRG 1 cut(s) 601
BmgT120I GGNCC 3 cut(s) 473, 629, 674
BmiI GGNNCC 1 cut(s) 749
BmrFI CCNGG 5 cut(s) 23, 501, 564, 648, 678
BmsI GCATC 1 cut(s) 294
BmtI GCTAGC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 771
BpuMI CCSGG 3 cut(s) 23, 501, 648
BsaBI GATNNNNATC 1 cut(s) 410
BsaJI CCNNGG 6 cut(s) 21, 97, 145, 500, 600, 646
Bse1I ACTGG 1 cut(s) 816
Bse3DI GCAATG 3 cut(s) 246, 542, 778
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 2 cut(s) 564, 678
BseDI CCNNGG 6 cut(s) 21, 97, 145, 500, 600, 646
BseGI GGATG 2 cut(s) 358, 687
BseJI GATNNNNATC 1 cut(s) 410
BseMI GCAATG 3 cut(s) 246, 542, 778
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 816
BseXI GCAGC 5 cut(s) 157, 188, 332, 795, 809
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 3 cut(s) 144, 474, 703
BshNI GGYRCC 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 5 cut(s) 23, 174, 205, 500, 648
BslFI GGGAC 2 cut(s) 70, 582
BsmAI GTCTC 2 cut(s) 127, 215
BsmFI GGGAC 2 cut(s) 70, 582
BsnI GGCC 3 cut(s) 144, 474, 703
BsoBI CYCGRG 1 cut(s) 601
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 3 cut(s) 517, 605, 790
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 3 cut(s) 765, 775, 835
BspANI GGCC 3 cut(s) 144, 474, 703
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 749
BspMI ACCTGC 2 cut(s) 284, 827
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 512, 613
BspT107I GGYRCC 1 cut(s) 747
BsrDI GCAATG 3 cut(s) 246, 542, 778
BsrI ACTGG 1 cut(s) 816
BssECI CCNNGG 6 cut(s) 21, 97, 145, 500, 600, 646
BssMI GATC 3 cut(s) 517, 605, 790
BssT1I CCWWGG 2 cut(s) 97, 145
Bst2UI CCWGG 2 cut(s) 564, 678
Bst4CI ACNGT 2 cut(s) 61, 366
BstAPI GCANNNNNTGC 2 cut(s) 257, 299
BstC8I GCNNGC 4 cut(s) 318, 507, 643, 765
BstDEI CTNAG 3 cut(s) 265, 588, 771
BstDSI CCRYGG 1 cut(s) 145
BstEII GGTNACC 1 cut(s) 814
BstF5I GGATG 2 cut(s) 358, 687
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 3 cut(s) 520, 608, 793
BstMAI GTCTC 2 cut(s) 127, 215
BstMBI GATC 3 cut(s) 517, 605, 790
BstMWI GCNNNNNNNGC 8 cut(s) 23, 257, 266, 299, 416, 425, 511, 642
BstNI CCWGG 2 cut(s) 564, 678
BstNSI RCATGY 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 5 cut(s) 21, 499, 562, 646, 676
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 5 cut(s) 157, 188, 332, 795, 809
BstX2I RGATCY 1 cut(s) 605
BstXI CCANNNNNNTGG 2 cut(s) 223, 401
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 3 cut(s) 144, 474, 703
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 2 cut(s) 358, 687
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 66, 330, 362
BveI ACCTGC 2 cut(s) 284, 827
Cac8I GCNNGC 4 cut(s) 318, 507, 643, 765
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 473, 629, 674
Csp6I GTAC 1 cut(s) 748
CviAII CATG 5 cut(s) 146, 313, 699, 736, 760
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 3 cut(s) 265, 588, 771
DpnI GATC 3 cut(s) 519, 607, 792
DpnII GATC 3 cut(s) 517, 605, 790
EciI GGCGGA 1 cut(s) 824
Eco130I CCWWGG 2 cut(s) 97, 145
Eco47I GGWCC 2 cut(s) 629, 674
Eco88I CYCGRG 1 cut(s) 601
Eco91I GGTNACC 1 cut(s) 814
EcoO65I GGTNACC 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 562, 676
EcoT14I CCWWGG 2 cut(s) 97, 145
ErhI CCWWGG 2 cut(s) 97, 145
FaeI CATG 5 cut(s) 149, 316, 702, 739, 763
FaiI YATR 9 cut(s) 147, 258, 314, 512, 638, 700, 737, 761, 843
FaqI GGGAC 2 cut(s) 70, 582
FatI CATG 5 cut(s) 145, 312, 698, 735, 759
FauI CCCGC 1 cut(s) 772
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 6 cut(s) 171, 202, 321, 776, 784, 823
FokI GGATG 2 cut(s) 365, 674
Fsp4HI GCNGC 6 cut(s) 171, 202, 321, 776, 784, 823
FspBI CTAG 2 cut(s) 14, 317
GlaI GCGC 1 cut(s) 418
GluI GCNGC 6 cut(s) 171, 202, 321, 776, 784, 823
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 3 cut(s) 144, 474, 703
HapII CCGG 5 cut(s) 23, 174, 205, 500, 648
HhaI GCGC 1 cut(s) 419
Hin1II CATG 5 cut(s) 149, 316, 702, 739, 763
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 3 cut(s) 120, 208, 377
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 5 cut(s) 23, 174, 205, 500, 648
HphI GGTGA 2 cut(s) 531, 808
Hpy166II GTNNAC 2 cut(s) 685, 801
Hpy188III TCNNGA 3 cut(s) 326, 398, 603
Hpy8I GTNNAC 2 cut(s) 685, 801
HpyAV CCTTC 2 cut(s) 134, 617
HpyCH4III ACNGT 2 cut(s) 61, 366
HpyCH4V TGCA 7 cut(s) 45, 86, 251, 285, 569, 698, 783
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 257, 266, 299, 416, 425, 511, 642
HpyF3I CTNAG 3 cut(s) 265, 588, 771
Hsp92II CATG 5 cut(s) 149, 316, 702, 739, 763
HspAI GCGC 1 cut(s) 417
KpnI GGTACC 1 cut(s) 751
Ksp22I TGATCA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 3 cut(s) 517, 605, 790
LmnI GCTCC 2 cut(s) 22, 425
Lsp1109I GCAGC 5 cut(s) 157, 188, 332, 795, 809
LweI GCATC 1 cut(s) 294
MaeI CTAG 2 cut(s) 14, 317
MaeIII GTNAC 5 cut(s) 65, 308, 485, 721, 814
MalI GATC 3 cut(s) 519, 607, 792
MboI GATC 3 cut(s) 517, 605, 790
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 7 cut(s) 91, 384, 429, 441, 495, 525, 651
MlyI GAGTC 2 cut(s) 129, 217
MseI TTAA 2 cut(s) 684, 732
MslI CAYNNNNRTG 2 cut(s) 221, 399
MspA1I CMGCKG 4 cut(s) 170, 201, 453, 461
MspI CCGG 5 cut(s) 23, 174, 205, 500, 648
MspR9I CCNGG 5 cut(s) 23, 501, 564, 648, 678
MvaI CCWGG 2 cut(s) 564, 678
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 8 cut(s) 23, 257, 266, 299, 416, 425, 511, 642
NciI CCSGG 3 cut(s) 23, 501, 648
NcoI CCATGG 1 cut(s) 145
NdeII GATC 3 cut(s) 517, 605, 790
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 5 cut(s) 149, 316, 702, 739, 763
NlaIV GGNNCC 1 cut(s) 749
NmuCI GTSAC 4 cut(s) 308, 485, 721, 814
NspI RCATGY 1 cut(s) 316
PaqCI CACCTGC 1 cut(s) 827
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 6 cut(s) 172, 203, 322, 777, 785, 824
PleI GAGTC 2 cut(s) 128, 216
PpsI GAGTC 2 cut(s) 128, 216
Psp6I CCWGG 2 cut(s) 562, 676
PspEI GGTNACC 1 cut(s) 814
PspGI CCWGG 2 cut(s) 562, 676
PspN4I GGNNCC 1 cut(s) 749
PspPI GGNCC 3 cut(s) 473, 629, 674
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 605
PvuII CAGCTG 4 cut(s) 170, 201, 453, 461
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 2 cut(s) 221, 399
SaqAI TTAA 2 cut(s) 684, 732
SatI GCNGC 6 cut(s) 171, 202, 321, 776, 784, 823
Sau3AI GATC 3 cut(s) 517, 605, 790
Sau96I GGNCC 3 cut(s) 473, 629, 674
SchI GAGTC 2 cut(s) 129, 217
ScrFI CCNGG 5 cut(s) 23, 501, 564, 648, 678
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 1 cut(s) 294
SinI GGWCC 2 cut(s) 629, 674
SmiMI CAYNNNNRTG 2 cut(s) 221, 399
Sse9I AATT 7 cut(s) 91, 384, 429, 441, 495, 525, 651
SsiI CCGC 3 cut(s) 765, 775, 835
SspMI CTAG 2 cut(s) 14, 317
StyD4I CCNGG 5 cut(s) 21, 499, 562, 646, 676
StyI CCWWGG 2 cut(s) 97, 145
TaaI ACNGT 2 cut(s) 61, 366
TaqI TCGA 2 cut(s) 288, 516
TaqII GACCGA 1 cut(s) 646
TasI AATT 7 cut(s) 91, 384, 429, 441, 495, 525, 651
TauI GCSGC 1 cut(s) 778
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 684, 732
Tru9I TTAA 2 cut(s) 684, 732
TscAI CASTG 3 cut(s) 66, 337, 369
TseFI GTSAC 4 cut(s) 308, 485, 721, 814
TseI GCWGC 5 cut(s) 170, 201, 320, 783, 822
Tsp45I GTSAC 4 cut(s) 308, 485, 721, 814
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 3 cut(s) 66, 337, 369
VpaK11BI GGWCC 2 cut(s) 629, 674
XapI RAATTY 5 cut(s) 91, 441, 495, 525, 651
XceI RCATGY 1 cut(s) 316
XspI CTAG 2 cut(s) 14, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.