Rh7DG188000

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000302
Physical Location & Seq
Reverse (-)
17391519 .. 17392041
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG188000.1

Sequence Viewer

Length: 381 bp
ATGCAAGAAATTCTGGCCATTAATATTGTTGCTTCAAACCCCACATTAGTTCCAACTCCATCTACTGCAAATCTGCAATCCATTATGAAGTACTCAAATGGTAGACTAACACAAACAACTTTCACTTTTGAAGTTCTTAATCATCAGAAGATGGATAACCAAAGCTCACACCCTAACTGGTCGCCAGCTGCCATTAAGTCTGCAATCAAGACAACCGCCGATGTACTAAACCTCGGAGGCAAGCCCATTGTTGATGAAAGACATGCTCCAGCAGACATCTTTGCCACTGGTGCAGGCCATGTCAAACCTTCAAAAGCAAATGACCCTGGGCTCATCTACGACCTAACCCTGAAGATTACATCCCCTACTTGTGCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

126

Amino Acids

13.48

Weight (kDa)

7.91

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AciI CCGC 2 cut(s) 216, 374
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 92, 225
AgsI TTSAA 3 cut(s) 36, 131, 312
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 2 cut(s) 165, 188
AluI AGCT 2 cut(s) 165, 188
AoxI GGCC 2 cut(s) 15, 295
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 9
AseI ATTAAT 1 cut(s) 21
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 67, 145
BciT130I CCWGG 1 cut(s) 327
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 232, 325, 326
Bse1I ACTGG 2 cut(s) 182, 292
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 232, 325, 326
BseGI GGATG 1 cut(s) 359
BseNI ACTGG 2 cut(s) 182, 292
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 17, 297
BsnI GGCC 2 cut(s) 17, 297
Bsp1286I GDGCHC 1 cut(s) 333
BspACI CCGC 2 cut(s) 216, 374
BspANI GGCC 2 cut(s) 17, 297
BsrI ACTGG 2 cut(s) 182, 292
BssECI CCNNGG 3 cut(s) 232, 325, 326
Bst2UI CCWGG 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 186, 242, 295
BstF5I GGATG 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 17, 297
BtsCI GGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 186, 242, 295
Csp6I GTAC 2 cut(s) 91, 224
CviAII CATG 2 cut(s) 263, 299
CviJI RGCY 6 cut(s) 17, 165, 188, 244, 297, 331
CviKI_1 RGCY 6 cut(s) 17, 165, 188, 244, 297, 331
CviQI GTAC 2 cut(s) 91, 224
EaeI YGGCCR 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 2 cut(s) 266, 302
FaiI YATR 3 cut(s) 86, 264, 300
FatI CATG 2 cut(s) 262, 298
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 17, 297
Hin1II CATG 2 cut(s) 266, 302
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 147, 236
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 318
HpyCH4V TGCA 5 cut(s) 4, 68, 76, 203, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Hsp92II CATG 2 cut(s) 266, 302
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 8 cut(s) 163, 198, 273, 279, 282, 312, 339, 362
Lsp1109I GCAGC 1 cut(s) 175
MboII GAAGA 2 cut(s) 160, 364
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 1 cut(s) 9
MluNI TGGCCA 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 230, 242
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 21, 138, 195
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 266, 302
NspI RCATGY 1 cut(s) 266
PasI CCCWGGG 1 cut(s) 326
PkrI GCNGC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 92, 225
RsaNI GTAC 2 cut(s) 91, 224
SaqAI TTAA 3 cut(s) 21, 138, 195
SatI GCNGC 1 cut(s) 189
ScaI AGTACT 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 333
SetI ASST 5 cut(s) 167, 190, 234, 310, 345
Sse9I AATT 1 cut(s) 9
SsiI CCGC 2 cut(s) 216, 374
SspI AATATT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 325
TasI AATT 1 cut(s) 9
TatI WGTACW 2 cut(s) 90, 223
Tru1I TTAA 3 cut(s) 21, 138, 195
Tru9I TTAA 3 cut(s) 21, 138, 195
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 101, 270
TspRI CASTG 1 cut(s) 292
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.