Rh7CG193500

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000302
Physical Location & Seq
Reverse (-)
17049499 .. 17050906
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG193500.1

Sequence Viewer

Length: 468 bp
ATGCAAGAAATTCTGGCCATTAATATTGTTGCTTCAAACCCCACATTAGTTCCAACTCCATCTACTGCAAATCTGCAATCCATTATGAAGTACTCAAATGGTAGACTAACACAAACAACTTTCACTTTTGAAGTTCTTAATCATCAGAAGATGGATAACCAAAGGTTTGTAGCCCTGCAGATTATATATCTTCACTGGCTCAAGAGCTCACACCCTAACTGGTCGCCAGCTGCCATTAAGTCTGCAATCAAGACAACCGCTGATGTACTAAACCTCGGAGGCAAGCCCATTGTTGATGAAAGACATGCTCCAGCAGACATCTTTGCCACTGGTGCAGGCCATGTCAAACCTTCAAAAGCAAATGACCCTGGGCTCATCTACGACCTAAACCCTGAAGATTACATCCCCTACTTGTGCTGTTTGAATTATACAGATGACCAGATACTGATGTTACCCAAGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

155

Amino Acids

17.26

Weight (kDa)

6.95

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AciI CCGC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 92, 267
AgsI TTSAA 4 cut(s) 36, 131, 354, 424
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 2 cut(s) 207, 230
AluI AGCT 2 cut(s) 207, 230
Alw21I GWGCWC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 2 cut(s) 15, 337
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 9
AseI ATTAAT 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 434, 467
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 2 cut(s) 209, 375
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 67, 145
BciT130I CCWGG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 274, 367, 368
Bse1I ACTGG 3 cut(s) 200, 224, 334
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 274, 367, 368
BseGI GGATG 1 cut(s) 402
BseNI ACTGG 3 cut(s) 200, 224, 334
BseXI GCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 17, 339
BsiHKAI GWGCWC 1 cut(s) 209
BsnI GGCC 2 cut(s) 17, 339
Bsp1286I GDGCHC 2 cut(s) 209, 375
BspACI CCGC 1 cut(s) 258
BspANI GGCC 2 cut(s) 17, 339
BspMAI CTGCAG 1 cut(s) 180
BsrI ACTGG 3 cut(s) 200, 224, 334
BssECI CCNNGG 3 cut(s) 274, 367, 368
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 465
BstC8I GCNNGC 3 cut(s) 228, 284, 337
BstF5I GGATG 1 cut(s) 402
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 17, 339
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 193, 327
Cac8I GCNNGC 3 cut(s) 228, 284, 337
CaiI CAGNNNCTG 1 cut(s) 445
Csp6I GTAC 2 cut(s) 91, 266
CviAII CATG 2 cut(s) 305, 341
CviJI RGCY 8 cut(s) 17, 173, 199, 207, 230, 286, 339, 373
CviKI_1 RGCY 8 cut(s) 17, 173, 199, 207, 230, 286, 339, 373
CviQI GTAC 2 cut(s) 91, 266
EaeI YGGCCR 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 209, 375
Eco53kI GAGCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 209, 375
FaeI CATG 2 cut(s) 308, 344
FaiI YATR 6 cut(s) 86, 185, 187, 306, 342, 429
FatI CATG 2 cut(s) 304, 340
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 2 cut(s) 209, 375
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 17, 339
Hin1II CATG 2 cut(s) 308, 344
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 147, 278
Hpy188III TCNNGA 2 cut(s) 202, 250
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 360
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4V TGCA 6 cut(s) 4, 68, 76, 178, 245, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
Hsp92II CATG 2 cut(s) 308, 344
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 450
MboII GAAGA 3 cut(s) 160, 182, 407
MhlI GDGCHC 2 cut(s) 209, 375
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 2 cut(s) 9, 424
MluNI TGGCCA 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 272, 284
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 21, 138, 237
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 2 cut(s) 230, 260
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 332
NlaIII CATG 2 cut(s) 308, 344
NspI RCATGY 1 cut(s) 308
PasI CCCWGGG 1 cut(s) 368
PkrI GCNGC 1 cut(s) 232
PshBI ATTAAT 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 2 cut(s) 92, 267
RsaNI GTAC 2 cut(s) 91, 266
SacI GAGCTC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 21, 138, 237
SatI GCNGC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 2 cut(s) 209, 375
SetI ASST 6 cut(s) 167, 209, 232, 276, 352, 387
SfcI CTRYAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 9, 424
SsiI CCGC 1 cut(s) 258
SspI AATATT 1 cut(s) 25
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 465
TasI AATT 2 cut(s) 9, 424
TatI WGTACW 2 cut(s) 90, 265
Tru1I TTAA 3 cut(s) 21, 138, 237
Tru9I TTAA 3 cut(s) 21, 138, 237
TscAI CASTG 2 cut(s) 200, 334
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 101, 312
TspRI CASTG 2 cut(s) 200, 334
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.