Rmu_sc0020375.1_g000001

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020375.1
OG0000302
Physical Location & Seq
Forward (+)
26 .. 597
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020375.1_g000001.1.cds

Sequence Viewer

Length: 572 bp
atgtgtgtagtgatgcagatcatataccttcttggctttagtttcatgttttacttttcactagcagttgctgatgaaaatacggcagcattggagccgctagccaagacaaagagcatgcaaacttctatagtttgggtggaaaagccagtcagagatttgattgcacaatctgaacatgaagatttagggagttggtaccatacatttttgcctcaaactattgcaaactcaaaccagctcgagaagccacgaatggtttatgcataccacaatgtggcaactggcttcgctgcaaagcagacagcggaggaagttgaagagatggaaaagaaagatgggtttagctccgctcatccagaacgaaatctgcaattgcacacaactcatagtcctaacttcttagggctgcagcaaggaatgggacttggtaaagggcctaactatgccgaaggtgtgattattggaattttggatagtgggatattcccagaccatccttcatttagtgatgaaggagtaccacatcctccagctaaatggaaaggcaagtgtgatttcagtgggacagt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

191

Amino Acids

21.18

Weight (kDa)

5.41

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 353
AciI CCGC 3 cut(s) 98, 308, 351
AcsI RAATTY 1 cut(s) 468
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 2 cut(s) 200, 522
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 3 cut(s) 241, 348, 536
AluI AGCT 3 cut(s) 241, 348, 536
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 4 cut(s) 86, 293, 409, 412
ApoI RAATTY 1 cut(s) 468
Asp718I GGTACC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 198
BbvI GCAGC 4 cut(s) 98, 280, 396, 424
BccI CCATC 3 cut(s) 319, 332, 504
BceAI ACGGC 1 cut(s) 99
BfaI CTAG 2 cut(s) 62, 101
BfmI CTRYAG 2 cut(s) 129, 410
BisI GCNGC 5 cut(s) 87, 98, 294, 410, 413
BlsI GCNGC 5 cut(s) 88, 99, 295, 411, 414
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 96, 200
BmsI GCATC 1 cut(s) 3
BmtI GCTAGC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 516
BsaBI GATNNNNATC 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 149, 289
Bse8I GATNNNNATC 1 cut(s) 17
BseGI GGATG 3 cut(s) 355, 496, 526
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 277
BseNI ACTGG 2 cut(s) 149, 289
BseXI GCAGC 4 cut(s) 98, 280, 396, 424
BshFI GGCC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 242
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 3 cut(s) 98, 308, 351
BspANI GGCC 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 96, 200
BspMAI CTGCAG 1 cut(s) 414
BspOI GCTAGC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 353
BsrI ACTGG 2 cut(s) 149, 289
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 102, 119
BstDEI CTNAG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 355, 496, 526
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 129, 410
BstV1I GCAGC 4 cut(s) 98, 280, 396, 424
BstXI CCANNNNNNTGG 1 cut(s) 540
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 3 cut(s) 355, 496, 526
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 102, 119
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 199, 521
CviAII CATG 3 cut(s) 46, 118, 179
CviQI GTAC 2 cut(s) 199, 521
DdeI CTNAG 1 cut(s) 403
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 437
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 3 cut(s) 49, 121, 182
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 45, 117, 178
Fnu4HI GCNGC 5 cut(s) 87, 98, 294, 410, 413
FokI GGATG 3 cut(s) 342, 483, 513
Fsp4HI GCNGC 5 cut(s) 87, 98, 294, 410, 413
FspBI CTAG 2 cut(s) 62, 101
GluI GCNGC 5 cut(s) 87, 98, 294, 410, 413
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 439
Hin1II CATG 3 cut(s) 49, 121, 182
Hpy188I TCNGA 2 cut(s) 155, 175
Hpy188III TCNNGA 2 cut(s) 244, 359
HpyAV CCTTC 4 cut(s) 38, 446, 509, 510
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 9 cut(s) 16, 121, 167, 227, 266, 296, 373, 379, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 403
Hsp92II CATG 3 cut(s) 49, 121, 182
KpnI GGTACC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 94, 353
LpnPI CCDG 6 cut(s) 162, 251, 270, 372, 504, 546
Lsp1109I GCAGC 4 cut(s) 98, 280, 396, 424
LweI GCATC 1 cut(s) 3
MaeI CTAG 2 cut(s) 62, 101
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 353
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 194, 332
MfeI CAATTG 1 cut(s) 374
MluCI AATT 2 cut(s) 374, 468
MnlI CCTC 3 cut(s) 225, 304, 540
Mph1103I ATGCAT 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 308
MunI CAATTG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 18
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 3 cut(s) 49, 121, 182
NlaIV GGNNCC 2 cut(s) 96, 200
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 121
PaeI GCATGC 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 5 cut(s) 88, 99, 295, 411, 414
PspN4I GGNNCC 2 cut(s) 96, 200
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 200, 522
RsaNI GTAC 2 cut(s) 199, 521
SatI GCNGC 5 cut(s) 87, 98, 294, 410, 413
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 437
SetI ASST 5 cut(s) 30, 243, 350, 457, 538
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 2 cut(s) 129, 410
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SphI GCATGC 1 cut(s) 121
Sse9I AATT 2 cut(s) 374, 468
SsiI CCGC 3 cut(s) 98, 308, 351
SspMI CTAG 2 cut(s) 62, 101
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 374, 468
TauI GCSGC 1 cut(s) 100
TscAI CASTG 1 cut(s) 568
TseI GCWGC 4 cut(s) 86, 293, 409, 412
TspDTI ATGAA 5 cut(s) 34, 90, 195, 492, 528
TspRI CASTG 1 cut(s) 568
Van91I CCANNNNNTGG 1 cut(s) 277
XapI RAATTY 1 cut(s) 468
XceI RCATGY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 2 cut(s) 62, 101
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.