RchiOBHm_Chr7g0200121

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000302
Physical Location & Seq
Reverse (-)
18013557 .. 18013928
372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17911

Sequence Viewer

Length: 372 bp
ATGCCCTCACCTGAGTGGCATTGCAGCTTTGCTCAAAAGAGCTCACACCCTGATTGGTCACCAGCTGCCATTAAGTCTGCAATTTTGACAACTGCTCAAGTACTAAACCTCGGCGTCAAGCCCATTGTGGATGAAACACTCGGTCCAGCTGACATCTTTGCCACTGGTGCAGCCCATGTTAACCCTTCAAGAGCAGATGACCGCGGCCTAATCTTTGACTTAGAACCAGCGGATTACATCCCCTATCTATGCGGTTTGAATTACAGTGACGATCAGATACAGATCATCACCCAACAAACAGTGAAATGCTCTCAAGTAGGAGCCATACCAGAAGCGCAGCTAAATTATCCTTTCATTTTCTATTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

123

Amino Acids

13.5

Weight (kDa)

4.54

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01091 FvH4_5g01093 FvH4_5g01120 FvH4_7g08400
malus_domestica MD00G1069300.v1.1 MD00G1069500.v1.1 MD04G1035800.v1.1 MD04G1071200.v1.1 MD04G1071500.v1.1 MD04G1071800.v1.1 MD04G1071900.v1.1 MD04G1072000.v1.1 MD04G1072200.v1.1 MD04G1072600.v1.1 MD04G1072700.v1.1 MD06G1068800.v1.1
prunus_persica Prupe.5G085000_v2.0.a1 Prupe.5G085100_v2.0.a1 Prupe.5G085200_v2.0.a1 Prupe.5G085300_v2.0.a1 Prupe.5G085400_v2.0.a1 Prupe.5G085500_v2.0.a1 Prupe.5G085600_v2.0.a1 Prupe.5G085700_v2.0.a1 Prupe.5G085800_v2.0.a1 Prupe.5G086100_v2.0.a1
pyrus_communis pycom04g02960 pycom04g06430 pycom04g06590
rosa_chinensis RchiOBHm_Chr0c20g0500201 RchiOBHm_Chr0c20g0500211 RchiOBHm_Chr6g0266941 RchiOBHm_Chr7g0200021 RchiOBHm_Chr7g0200051 RchiOBHm_Chr7g0200061 RchiOBHm_Chr7g0200121 RchiOBHm_Chr7g0200141 RchiOBHm_Chr7g0200151 RchiOBHm_Chr7g0200181 RchiOBHm_Chr7g0200191
rosa_laevigata RLG00000003743 RLG00000003744 RLG00000003745 RLG00000003746 RLG00000003747 RLG00000003748 RLG00000003749 RLG00000003750 RLG00000028998 RLG00000028999 RLG00000029001
rosa_multiflora Rmu_co8342527.1_g000001 Rmu_co8411041.1_g000001 Rmu_sc0003357.1_g000004 Rmu_sc0003357.1_g000005 Rmu_sc0003357.1_g000007 Rmu_sc0006398.1_g000001 Rmu_sc0006398.1_g000003 Rmu_sc0006398.1_g000007 Rmu_sc0006398.1_g000008 Rmu_sc0006398.1_g000009 Rmu_sc0006685.1_g000001 Rmu_sc0010281.1_g000004 Rmu_sc0020375.1_g000001 Rmu_ssc0000486.1_g000017
rosa_roxburghii Rroxscaffold_3G00256220 Rroxscaffold_3G00256230 Rroxscaffold_3G00256240 Rroxscaffold_3G00256250 Rroxscaffold_3G00256260 Rroxscaffold_3G00256270 Rroxscaffold_3G00256280 Rroxscaffold_4G00311060
rosa_rugosa Rorug01G0165100 Rorug01G0165100 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058000 Rorug07G0058100 Rorug07G0058100 Rorug07G0058200
rosa_samantha Rh1AG180000 Rh1CG167000 Rh1DG180300 Rh6AG149600 Rh6BG150600 Rh6CG145600 Rh7AG183300 Rh7AG183400 Rh7AG183800 Rh7AG184000 Rh7CG193000 Rh7CG193100 Rh7CG193200 Rh7CG193500 Rh7CG193600 Rh7CG193700 Rh7CG193800 Rh7CG194000 Rh7DG186300 Rh7DG186400 Rh7DG186500 Rh7DG186700 Rh7DG186800 Rh7DG187400 Rh7DG187500 Rh7DG187600 Rh7DG187800 Rh7DG187900 Rh7DG188000
rosa_wichuraiana Rw1G014970 Rw6G012950 Rw7G016050 Rw7G016060 Rw7G016070 Rw7G016080 Rw7G016090 Rw7G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 4 cut(s) 202, 204, 230, 252
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 2 cut(s) 189, 259
AleI CACNNNNGTG 1 cut(s) 13
AluBI AGCT 5 cut(s) 27, 42, 65, 149, 340
AluI AGCT 5 cut(s) 27, 42, 65, 149, 340
Alw21I GWGCWC 1 cut(s) 44
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 24, 65, 170, 337
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 51, 280
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 36, 52, 182, 349
BisI GCNGC 5 cut(s) 25, 66, 171, 205, 338
BlsI GCNGC 5 cut(s) 26, 67, 172, 206, 339
BmcAI AGTACT 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 81, 297
BsaBI GATNNNNATC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 109, 202
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 109, 202
BseGI GGATG 2 cut(s) 136, 237
BseJI GATNNNNATC 1 cut(s) 281
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 36, 52, 182, 349
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 44
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 271, 282
BspACI CCGC 4 cut(s) 202, 204, 230, 252
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 4
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 109, 202
BssMI GATC 2 cut(s) 271, 282
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 266, 301
BstACI GRCGYC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 12, 220
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 57
BstF5I GGATG 2 cut(s) 136, 237
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 274, 285
BstMBI GATC 2 cut(s) 271, 282
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 57
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 36, 52, 182, 349
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 136, 237
BtsIMutI CAGTG 3 cut(s) 162, 271, 306
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 143
Cfr42I CCGCGG 1 cut(s) 205
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 176
CviJI RGCY 9 cut(s) 27, 42, 65, 121, 149, 173, 207, 323, 340
CviKI_1 RGCY 9 cut(s) 27, 42, 65, 121, 149, 173, 207, 323, 340
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 12, 220
DpnI GATC 2 cut(s) 273, 284
DpnII GATC 2 cut(s) 271, 282
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 42
Eco91I GGTNACC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 179
FaiI YATR 3 cut(s) 177, 250, 326
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 5 cut(s) 25, 66, 171, 205, 338
FokI GGATG 2 cut(s) 143, 224
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 5 cut(s) 25, 66, 171, 205, 338
GlaI GCGC 1 cut(s) 336
GluI GCNGC 5 cut(s) 25, 66, 171, 205, 338
HaeIII GGCC 1 cut(s) 207
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 2 cut(s) 51, 280
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 266, 301
HpyCH4V TGCA 3 cut(s) 24, 80, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 12, 220
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 1 cut(s) 335
KspAI GTTAAC 1 cut(s) 181
KspI CCGCGG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 271, 282
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 24, 63, 75, 150, 159, 240, 342
Lsp1109I GCAGC 4 cut(s) 36, 52, 182, 349
MaeIII GTNAC 2 cut(s) 57, 266
MalI GATC 2 cut(s) 273, 284
MboI GATC 2 cut(s) 271, 282
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 81, 259, 343
MnlI CCTC 2 cut(s) 16, 119
MseI TTAA 2 cut(s) 72, 180
MslI CAYNNNNRTG 1 cut(s) 13
MspA1I CMGCKG 4 cut(s) 65, 149, 204, 230
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 271, 282
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 57, 266
OliI CACNNNNGTG 1 cut(s) 13
PkrI GCNGC 5 cut(s) 26, 67, 172, 206, 339
Psp124BI GAGCTC 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 65, 149
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 13
SacI GAGCTC 1 cut(s) 44
SacII CCGCGG 1 cut(s) 205
SaqAI TTAA 2 cut(s) 72, 180
SatI GCNGC 5 cut(s) 25, 66, 171, 205, 338
Sau3AI GATC 2 cut(s) 271, 282
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 102
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 13, 29, 44, 67, 111, 151, 342
Sfr303I CCGCGG 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 205
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 96, 312
SmoI CTYRAG 2 cut(s) 96, 312
Sse9I AATT 3 cut(s) 81, 259, 343
SsiI CCGC 4 cut(s) 202, 204, 230, 252
SstI GAGCTC 1 cut(s) 44
TaaI ACNGT 2 cut(s) 266, 301
TaqII GACCGA 1 cut(s) 131
TasI AATT 3 cut(s) 81, 259, 343
TatI WGTACW 1 cut(s) 100
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 2 cut(s) 72, 180
Tru9I TTAA 2 cut(s) 72, 180
TscAI CASTG 3 cut(s) 169, 271, 306
TseFI GTSAC 2 cut(s) 57, 266
TseI GCWGC 4 cut(s) 24, 65, 170, 337
Tsp45I GTSAC 2 cut(s) 57, 266
TspDTI ATGAA 2 cut(s) 147, 343
TspRI CASTG 3 cut(s) 169, 271, 306
VpaK11BI GGWCC 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.