FvH4_2g24891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000308
Physical Location & Seq
Forward (+)
20237011 .. 20239345
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24891.t1

Sequence Viewer

Length: 966 bp
ATGCCGGAGAAGGAATATTACAGTGACGAAGGGAGAGTCTCCTCGCTCGGAGCCAACATCATCAATAAGGAGGAAGAAGACGGTGGACCTGCGACCGTCGATGACTCGATGGGAAAAGGACTCCGGCAAGTGAAGGGTTTGGAGGGGTGGCCCTTGGGGCTTCAATCGATGCGAGCGCCGGTTGCTTTGACGAAATATGATGGAATTGATGATGTCAATGGTGTTCCTCTCATTGCTTGGCGTAATCGCATTATGAAAATTAGGGTTGACATCGACTTTGAACAACTTCTCCTGCTGGAACGATTGTTCACTCTTGAAGATGAGATTAAAAAAGTTAATCAATTCAAGTATGACAAGATTTTGGACGTTACACTTACCACTCGGTGTGGATTCATCACACATGTTGGACTATCACGCTTTGGCAGACCCTTGGATGAGGCAACACCACCTATTGGGTTGCAGCCGGGACCAGCAATGGCGACCTTCCTTGTGAATATAGTGGCTCCGCCGAGTCAACCAGGTGCTCCAACCACGGTTTTTAGGGCTCAAATCCCTTTTGAACATCAACATCGTTCTCCAATTAGTGGAAAAAGAAGGAAGAGGACTGAGGGATACTCCATCTCTCCCAAATGTCCTCATTTGAGCTTGGCAGTTGGAAGACATAATGTGGATGCAGCCACCGTGTGCTTACTTCCTTTGCAGCCACTTAAAGCCAGTCCCAAGAGAAGAAGAGGATGTCCAGTTGGTAGCAAAAACAAATCAGGAAAGAAAGATCCTGAGAAGAAGAGGAAGTCTATAAAGAAGAACCTTCTTGGTCAGTTGGAGGAGGAGAGTGAGATAGTAGCTGACTCCTATCTGACGAGATTGGAAGATTTAGATGTAATGCGTCTTAGAGAGTTAGAGGGCATGGTTATTTGTAACATTAGACTATTTAGGCTTGCCATATGGAAGTTGATTGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

35.9

Weight (kDa)

9.34

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AccB7I CCANNNNNTGG 2 cut(s) 452, 584
AciI CCGC 1 cut(s) 506
AclWI GGATC 1 cut(s) 767
AdeI CACNNNGTG 2 cut(s) 384, 684
AfiI CCNNNNNNNGG 2 cut(s) 452, 584
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 5 cut(s) 164, 281, 317, 346, 560
AjnI CCWGG 1 cut(s) 517
AloI GAACNNNNNNTCC 4 cut(s) 273, 290, 305, 322
AluBI AGCT 2 cut(s) 645, 845
AluI AGCT 2 cut(s) 645, 845
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 767
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 3 cut(s) 460, 674, 700
ArsI GACNNNNNNTTYG 4 cut(s) 21, 53, 260, 292
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 86, 150, 467
AsuC2I CCSGG 1 cut(s) 465
AvaII GGWCC 2 cut(s) 86, 467
BanII GRGCYC 1 cut(s) 547
BarI GAAGNNNNNNTAC 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 84, 664
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 3 cut(s) 472, 686, 712
BccI CCATC 3 cut(s) 103, 194, 626
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 1 cut(s) 605
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 97
BfuI GTATCC 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 157
BisI GCNGC 3 cut(s) 461, 675, 701
BlsI GCNGC 3 cut(s) 462, 676, 702
Bme1390I CCNGG 2 cut(s) 465, 519
Bme18I GGWCC 2 cut(s) 86, 467
BmgT120I GGNCC 3 cut(s) 86, 150, 467
BmiI GGNNCC 3 cut(s) 52, 468, 504
BmrFI CCNGG 2 cut(s) 465, 519
BmsI GCATC 2 cut(s) 159, 661
BpiI GAAGAC 2 cut(s) 84, 664
BplI GAGNNNNNCTC 2 cut(s) 599, 631
BpuMI CCSGG 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 153, 429, 531
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 584
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 714, 740
Bse3DI GCAATG 2 cut(s) 231, 480
BseBI CCWGG 1 cut(s) 519
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 153, 429, 531
BseGI GGATG 3 cut(s) 439, 676, 740
BseLI CCNNNNNNNGG 2 cut(s) 452, 584
BseMI GCAATG 2 cut(s) 231, 480
BseMII CTCAG 2 cut(s) 597, 768
BseNI ACTGG 2 cut(s) 714, 740
BseRI GAGGAG 3 cut(s) 31, 839, 842
BseXI GCAGC 3 cut(s) 472, 686, 712
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 151
BshVI ATCGAT 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 4 cut(s) 5, 124, 179, 464
BslFI GGGAC 2 cut(s) 480, 702
BslI CCNNNNNNNGG 2 cut(s) 452, 584
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 480, 702
BsnI GGCC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 526, 547
Bsp143I GATC 1 cut(s) 772
BspACI CCGC 1 cut(s) 506
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 598, 769
BspDI ATCGAT 1 cut(s) 167
BspLI GGNNCC 3 cut(s) 52, 468, 504
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 767
BsrDI GCAATG 2 cut(s) 231, 480
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 714, 740
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 3 cut(s) 153, 429, 531
BssMI GATC 1 cut(s) 772
BssT1I CCWWGG 2 cut(s) 153, 429
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 5 cut(s) 23, 83, 97, 535, 682
Bst6I CTCTTC 3 cut(s) 593, 724, 779
BstC8I GCNNGC 2 cut(s) 174, 939
BstDEI CTNAG 3 cut(s) 606, 777, 890
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 439, 676, 740
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 775
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 772
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 157, 182
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 2 cut(s) 463, 517
BstV1I GCAGC 3 cut(s) 472, 686, 712
BstV2I GAAGAC 2 cut(s) 84, 664
BstX2I RGATCY 1 cut(s) 772
BstYI RGATCY 1 cut(s) 772
Bsu15I ATCGAT 1 cut(s) 167
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 1 cut(s) 151
BsuTUI ATCGAT 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 3 cut(s) 439, 676, 740
BtsIMutI CAGTG 1 cut(s) 28
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 174, 939
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 86, 150, 467
ClaI ATCGAT 1 cut(s) 167
CseI GACGC 1 cut(s) 875
CsiI ACCWGGT 1 cut(s) 517
CviAII CATG 2 cut(s) 401, 907
DdeI CTNAG 3 cut(s) 606, 777, 890
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
DraIII CACNNNGTG 2 cut(s) 384, 684
Eam1104I CTCTTC 3 cut(s) 593, 724, 779
EarI CTCTTC 3 cut(s) 593, 724, 779
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 2 cut(s) 153, 429
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 86, 467
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 153, 429
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 2 cut(s) 153, 429
FaeI CATG 2 cut(s) 404, 910
FaqI GGGAC 2 cut(s) 480, 702
FatI CATG 2 cut(s) 400, 906
FauNDI CATATG 1 cut(s) 944
Fnu4HI GCNGC 3 cut(s) 461, 675, 701
FokI GGATG 3 cut(s) 446, 683, 747
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 3 cut(s) 461, 675, 701
GlaI GCGC 1 cut(s) 177
GluI GCNGC 3 cut(s) 461, 675, 701
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 5, 124, 179, 464
HgaI GACGC 1 cut(s) 875
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 404, 910
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 2 cut(s) 268, 515
HindII GTYRAC 2 cut(s) 268, 515
HinfI GANTC 6 cut(s) 36, 104, 120, 390, 511, 848
HpaII CCGG 4 cut(s) 5, 124, 179, 464
Hpy166II GTNNAC 4 cut(s) 86, 268, 309, 515
Hpy188I TCNGA 2 cut(s) 50, 858
Hpy188III TCNNGA 3 cut(s) 314, 762, 776
Hpy8I GTNNAC 4 cut(s) 86, 268, 309, 515
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 4, 23, 127, 493, 588, 818
HpyCH4III ACNGT 5 cut(s) 23, 83, 97, 535, 682
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 460, 674, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 182
HpyF3I CTNAG 3 cut(s) 606, 777, 890
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 2 cut(s) 404, 910
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 772
LmnI GCTCC 3 cut(s) 50, 508, 529
Lsp1109I GCAGC 3 cut(s) 472, 686, 712
LweI GCATC 2 cut(s) 159, 661
MabI ACCWGGT 1 cut(s) 517
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 23, 367, 917
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 2 cut(s) 526, 547
MluCI AATT 4 cut(s) 204, 258, 341, 579
MlyI GAGTC 5 cut(s) 45, 98, 114, 520, 842
MmeI TCCRAC 4 cut(s) 385, 551, 634, 801
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 3 cut(s) 327, 336, 708
MspI CCGG 4 cut(s) 5, 124, 179, 464
MspR9I CCNGG 2 cut(s) 465, 519
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 157, 182
NciI CCSGG 1 cut(s) 465
NdeI CATATG 1 cut(s) 944
NdeII GATC 1 cut(s) 772
NlaIII CATG 2 cut(s) 404, 910
NlaIV GGNNCC 3 cut(s) 52, 468, 504
NmeAIII GCCGAG 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 404
PciI ACATGT 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 390
PflMI CCANNNNNTGG 2 cut(s) 452, 584
PkrI GCNGC 3 cut(s) 462, 676, 702
PleI GAGTC 5 cut(s) 44, 98, 114, 519, 842
PpsI GAGTC 5 cut(s) 44, 98, 114, 519, 842
PscI ACATGT 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 3 cut(s) 52, 468, 504
PspPI GGNCC 3 cut(s) 86, 150, 467
PsuI RGATCY 1 cut(s) 772
SaqAI TTAA 3 cut(s) 327, 336, 708
SatI GCNGC 3 cut(s) 461, 675, 701
Sau3AI GATC 1 cut(s) 772
Sau96I GGNCC 3 cut(s) 86, 150, 467
SchI GAGTC 5 cut(s) 45, 98, 114, 520, 842
ScrFI CCNGG 2 cut(s) 465, 519
SduI GDGCHC 2 cut(s) 526, 547
SetI ASST 8 cut(s) 91, 369, 451, 485, 523, 647, 810, 847
SexAI ACCWGGT 1 cut(s) 517
SfaNI GCATC 2 cut(s) 159, 661
SinI GGWCC 2 cut(s) 86, 467
Sse9I AATT 4 cut(s) 204, 258, 341, 579
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 463, 517
StyI CCWWGG 2 cut(s) 153, 429
TaaI ACNGT 5 cut(s) 23, 83, 97, 535, 682
TaiI ACGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 99, 107, 167, 273
TasI AATT 4 cut(s) 204, 258, 341, 579
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 3 cut(s) 327, 336, 708
Tru9I TTAA 3 cut(s) 327, 336, 708
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 3 cut(s) 460, 674, 700
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 269, 382
TspRI CASTG 1 cut(s) 28
Van91I CCANNNNNTGG 2 cut(s) 452, 584
VpaK11BI GGWCC 2 cut(s) 86, 467
XceI RCATGY 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.