FvH4_4g09031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000308
Physical Location & Seq
Reverse (-)
10157173 .. 10158874
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09031.t1

Sequence Viewer

Length: 621 bp
ATGGCTGCAAGGCTTGTATCCTCCTTGACTCTGGCAAGGGGGAAGAAGGCGGTGGATTTGAGGCAGTCGAAAGGGAAAAGTCTCAGTCAAGCAGAGGTGTTTTTGGTAGGGAAACTGATCACTGCATGTGACTTTAATCGCGGATTCTTCATGGGAATGTGTACAACGGCCTGGCAATTGAATGATAAGTTTAGGGTTGAACCTGTTGAAGGAGGAAGGGATGTGGAGACTATCCCCTTGATCAAATCCTCATATTGGATAACTTTGTTGAAGGTTCCTCCTCTTTGTTGGTCCGAAAGACTCATGCATATTGTTGGAAGCACACTGAGGGAGATGAAGGAGTTTGATAAGCCGGCATGGAAGAACAAAATTATAGAGATTCGGGTTGAGATCAATTTCATGCAACCCTTGTTGCTAGAGAGGTTGTTTTGCTTGGATGATGTTTCGCTTCGTAAGAACAAGAACAAGGAAGCTCGTGGGACTGTTGGAAAAGAAGAACTAGAGGGTGTAGGCAAAGCAAGGAAAAAGAAAGCTACAAAGAATCTGTTAATGCAGTTGGAGAAGGAAGTAGAAGAAGATGCTAACTCCAACCCCTCAGGGAAGGAGATTGTGACAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.36

Weight (kDa)

9.43

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 50, 141
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 209, 255
AgsI TTSAA 4 cut(s) 181, 200, 209, 271
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 473, 533
AluI AGCT 2 cut(s) 473, 533
Alw26I GTCTC 2 cut(s) 86, 221
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 291
AvaII GGWCC 1 cut(s) 291
AxyI CCTNAGG 1 cut(s) 595
BauI CACGAG 1 cut(s) 474
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 172
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 2 cut(s) 117, 240
BcoDI GTCTC 2 cut(s) 86, 221
BfaI CTAG 2 cut(s) 416, 500
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 568
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 255
Bse118I RCCGGY 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 595
BseBI CCWGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 226, 442
BseLI CCNNNNNNNGG 2 cut(s) 209, 255
BseMII CTCAG 3 cut(s) 97, 317, 609
BseRI GAGGAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 209, 255
BsmAI GTCTC 2 cut(s) 86, 221
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 161
Bsp143I GATC 3 cut(s) 117, 240, 390
BspACI CCGC 2 cut(s) 50, 141
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 96, 318, 608
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 352
BssMI GATC 3 cut(s) 117, 240, 390
BssSI CACGAG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 484, 616
BstAUI TGTACA 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 83, 326, 595
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 226, 442
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 3 cut(s) 120, 243, 393
BstMAI GTCTC 2 cut(s) 86, 221
BstMBI GATC 3 cut(s) 117, 240, 390
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 595
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 226, 442
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 323
Cac8I GCNNGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 162
CviAII CATG 5 cut(s) 126, 151, 304, 357, 400
CviJI RGCY 6 cut(s) 5, 13, 170, 352, 473, 533
CviKI_1 RGCY 6 cut(s) 5, 13, 170, 352, 473, 533
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 83, 326, 595
DpnI GATC 3 cut(s) 119, 242, 392
DpnII GATC 3 cut(s) 117, 240, 390
Eco47I GGWCC 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 595
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 309
FaeI CATG 5 cut(s) 129, 154, 307, 360, 403
FaiI YATR 8 cut(s) 127, 152, 253, 305, 309, 358, 374, 401
FaqI GGGAC 1 cut(s) 493
FatI CATG 5 cut(s) 125, 150, 303, 356, 399
FbaI TGATCA 2 cut(s) 117, 240
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 233, 449
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 416, 500
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 353
Hin1II CATG 5 cut(s) 129, 154, 307, 360, 403
HinfI GANTC 5 cut(s) 28, 144, 300, 379, 541
HpaII CCGG 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 7 cut(s) 40, 203, 210, 265, 331, 556, 595
HpyCH4III ACNGT 2 cut(s) 484, 616
HpyCH4V TGCA 5 cut(s) 8, 125, 307, 403, 553
HpyF3I CTNAG 3 cut(s) 83, 326, 595
Hsp92II CATG 5 cut(s) 129, 154, 307, 360, 403
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Ksp22I TGATCA 2 cut(s) 117, 240
Kzo9I GATC 3 cut(s) 117, 240, 390
LpnPI CCDG 6 cut(s) 17, 157, 184, 216, 366, 582
LweI GCATC 1 cut(s) 568
MaeI CTAG 2 cut(s) 416, 500
MaeIII GTNAC 2 cut(s) 128, 610
MalI GATC 3 cut(s) 119, 242, 392
MboI GATC 3 cut(s) 117, 240, 390
MboII GAAGA 6 cut(s) 55, 139, 373, 506, 584, 587
MfeI CAATTG 1 cut(s) 176
MluCI AATT 3 cut(s) 176, 369, 394
MlyI GAGTC 2 cut(s) 22, 294
MmeI TCCRAC 4 cut(s) 295, 466, 537, 612
Mph1103I ATGCAT 1 cut(s) 309
MroNI GCCGGC 1 cut(s) 352
MseI TTAA 2 cut(s) 135, 548
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 141
NaeI GCCGGC 1 cut(s) 354
NdeII GATC 3 cut(s) 117, 240, 390
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 5 cut(s) 129, 154, 307, 360, 403
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 128, 610
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 144, 379, 541
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 22, 294
PpsI GAGTC 2 cut(s) 22, 294
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 291
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 135, 548
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 117, 240, 390
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 2 cut(s) 22, 294
ScrFI CCNGG 1 cut(s) 172
SetI ASST 6 cut(s) 99, 205, 276, 425, 475, 535
SfaNI GCATC 1 cut(s) 568
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 3 cut(s) 176, 369, 394
SsiI CCGC 2 cut(s) 50, 141
SspMI CTAG 2 cut(s) 416, 500
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 484, 616
TaqI TCGA 1 cut(s) 68
TasI AATT 3 cut(s) 176, 369, 394
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 3 cut(s) 144, 379, 541
Tru1I TTAA 2 cut(s) 135, 548
Tru9I TTAA 2 cut(s) 135, 548
TscAI CASTG 2 cut(s) 127, 330
TseFI GTSAC 2 cut(s) 128, 610
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 128, 610
TspDTI ATGAA 3 cut(s) 139, 350, 388
TspRI CASTG 2 cut(s) 127, 330
VpaK11BI GGWCC 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 207
XceI RCATGY 1 cut(s) 129
XspI CTAG 2 cut(s) 416, 500
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.