ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 368, 567 |
| Acc16I | TGCGCA | 1 cut(s) | 497 |
| AccB1I | GGYRCC | 1 cut(s) | 352 |
| AccBSI | CCGCTC | 1 cut(s) | 153 |
| AccII | CGCG | 2 cut(s) | 136, 148 |
| AciI | CCGC | 5 cut(s) | 21, 50, 136, 151, 962 |
| AclWI | GGATC | 2 cut(s) | 245, 350 |
| AcoI | YGGCCR | 2 cut(s) | 18, 255 |
| AcyI | GRCGYC | 2 cut(s) | 365, 564 |
| AfaI | GTAC | 4 cut(s) | 326, 374, 717, 1078 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 86, 208 |
| AgsI | TTSAA | 6 cut(s) | 298, 457, 557, 586, 637, 1070 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 749 |
| AjiI | CACGTC | 1 cut(s) | 26 |
| AjnI | CCWGG | 1 cut(s) | 747 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 812, 844 |
| AluBI | AGCT | 7 cut(s) | 124, 305, 476, 730, 796, 1055, 1073 |
| AluI | AGCT | 7 cut(s) | 124, 305, 476, 730, 796, 1055, 1073 |
| Alw26I | GTCTC | 3 cut(s) | 32, 677, 703 |
| AlwI | GGATC | 2 cut(s) | 245, 350 |
| AoxI | GGCC | 7 cut(s) | 18, 62, 255, 284, 402, 881, 919 |
| ApeKI | GCWGC | 2 cut(s) | 32, 1055 |
| AspLEI | GCGC | 3 cut(s) | 136, 150, 498 |
| AspS9I | GGNCC | 2 cut(s) | 284, 881 |
| AsuC2I | CCSGG | 2 cut(s) | 203, 776 |
| AsuHPI | GGTGA | 3 cut(s) | 199, 800, 1004 |
| AxyI | CCTNAGG | 1 cut(s) | 1092 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 316, 349 |
| BanI | GGYRCC | 1 cut(s) | 352 |
| BbsI | GAAGAC | 1 cut(s) | 1034 |
| BbvI | GCAGC | 2 cut(s) | 44, 1042 |
| BccI | CCATC | 3 cut(s) | 88, 323, 1099 |
| BceAI | ACGGC | 2 cut(s) | 868, 934 |
| BciT130I | CCWGG | 1 cut(s) | 749 |
| BcnI | CCSGG | 2 cut(s) | 203, 776 |
| BcoDI | GTCTC | 3 cut(s) | 32, 677, 703 |
| BfaI | CTAG | 3 cut(s) | 575, 651, 929 |
| BfmI | CTRYAG | 1 cut(s) | 864 |
| BisI | GCNGC | 4 cut(s) | 21, 33, 151, 1056 |
| BlsI | GCNGC | 4 cut(s) | 22, 34, 152, 1057 |
| Bme1390I | CCNGG | 3 cut(s) | 203, 749, 776 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 749 |
| BmgBI | CACGTC | 1 cut(s) | 26 |
| BmgT120I | GGNCC | 2 cut(s) | 284, 881 |
| BmiI | GGNNCC | 3 cut(s) | 354, 396, 1011 |
| BmrFI | CCNGG | 3 cut(s) | 203, 749, 776 |
| BmsI | GCATC | 2 cut(s) | 844, 1029 |
| BpiI | GAAGAC | 1 cut(s) | 1034 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 980, 1012 |
| BpmI | CTGGAG | 2 cut(s) | 237, 663 |
| Bpu10I | CCTNAGC | 1 cut(s) | 981 |
| BpuMI | CCSGG | 2 cut(s) | 203, 776 |
| BsaHI | GRCGYC | 2 cut(s) | 365, 564 |
| BsaJI | CCNNGG | 4 cut(s) | 287, 444, 763, 1043 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 500, 530 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 86, 208 |
| Bse1I | ACTGG | 4 cut(s) | 65, 220, 380, 568 |
| Bse21I | CCTNAGG | 1 cut(s) | 1092 |
| Bse3DI | GCAATG | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 749 |
| BseDI | CCNNGG | 4 cut(s) | 287, 444, 763, 1043 |
| BseGI | GGATG | 3 cut(s) | 80, 384, 859 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 86, 208 |
| BseMI | GCAATG | 1 cut(s) | 21 |
| BseMII | CTCAG | 1 cut(s) | 1011 |
| BseNI | ACTGG | 4 cut(s) | 65, 220, 380, 568 |
| BseX3I | CGGCCG | 1 cut(s) | 255 |
| BseXI | GCAGC | 2 cut(s) | 44, 1042 |
| BseYI | CCCAGC | 1 cut(s) | 696 |
| Bsh1236I | CGCG | 2 cut(s) | 136, 148 |
| Bsh1285I | CGRYCG | 1 cut(s) | 258 |
| BshFI | GGCC | 7 cut(s) | 20, 64, 257, 286, 404, 883, 921 |
| BshNI | GGYRCC | 1 cut(s) | 352 |
| BsiEI | CGRYCG | 1 cut(s) | 258 |
| BsiSI | CCGG | 5 cut(s) | 202, 254, 401, 481, 775 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 86, 208 |
| BsmAI | GTCTC | 3 cut(s) | 32, 677, 703 |
| BsmBI | CGTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 7 cut(s) | 20, 64, 257, 286, 404, 883, 921 |
| Bsp143I | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 5 cut(s) | 21, 50, 136, 151, 962 |
| BspANI | GGCC | 7 cut(s) | 20, 64, 257, 286, 404, 883, 921 |
| BspCNI | CTCAG | 1 cut(s) | 1010 |
| BspFNI | CGCG | 2 cut(s) | 136, 148 |
| BspLI | GGNNCC | 3 cut(s) | 354, 396, 1011 |
| BspPI | GGATC | 2 cut(s) | 245, 350 |
| BspT107I | GGYRCC | 1 cut(s) | 352 |
| BsrBI | CCGCTC | 1 cut(s) | 153 |
| BsrDI | GCAATG | 1 cut(s) | 21 |
| BsrI | ACTGG | 4 cut(s) | 65, 220, 380, 568 |
| BssECI | CCNNGG | 4 cut(s) | 287, 444, 763, 1043 |
| BssMI | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| BssNI | GRCGYC | 2 cut(s) | 365, 564 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 763 |
| Bst2UI | CCWGG | 1 cut(s) | 749 |
| Bst4CI | ACNGT | 4 cut(s) | 230, 445, 609, 873 |
| Bst6I | CTCTTC | 1 cut(s) | 53 |
| BstACI | GRCGYC | 2 cut(s) | 365, 564 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 1 cut(s) | 702 |
| BstDEI | CTNAG | 3 cut(s) | 981, 997, 1092 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 444 |
| BstF5I | GGATG | 3 cut(s) | 80, 384, 859 |
| BstFNI | CGCG | 2 cut(s) | 136, 148 |
| BstHHI | GCGC | 3 cut(s) | 136, 150, 498 |
| BstKTI | GATC | 5 cut(s) | 176, 253, 345, 413, 513 |
| BstMAI | GTCTC | 3 cut(s) | 32, 677, 703 |
| BstMBI | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| BstMCI | CGRYCG | 1 cut(s) | 258 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 20, 29, 41, 311, 447, 889 |
| BstNI | CCWGG | 1 cut(s) | 749 |
| BstSCI | CCNGG | 3 cut(s) | 201, 747, 774 |
| BstSFI | CTRYAG | 1 cut(s) | 864 |
| BstUI | CGCG | 2 cut(s) | 136, 148 |
| BstV1I | GCAGC | 2 cut(s) | 44, 1042 |
| BstV2I | GAAGAC | 1 cut(s) | 1034 |
| BstX2I | RGATCY | 2 cut(s) | 250, 342 |
| BstYI | RGATCY | 2 cut(s) | 250, 342 |
| BstZI | CGGCCG | 1 cut(s) | 255 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1092 |
| BsuRI | GGCC | 7 cut(s) | 20, 64, 257, 286, 404, 883, 921 |
| BtgI | CCRYGG | 2 cut(s) | 287, 444 |
| BtrI | CACGTC | 1 cut(s) | 26 |
| BtsCI | GGATG | 3 cut(s) | 80, 384, 859 |
| BtsIMutI | CAGTG | 1 cut(s) | 72 |
| Cac8I | GCNNGC | 1 cut(s) | 702 |
| CfoI | GCGC | 3 cut(s) | 136, 150, 498 |
| Cfr13I | GGNCC | 2 cut(s) | 284, 881 |
| CsiI | ACCWGGT | 1 cut(s) | 747 |
| Csp6I | GTAC | 4 cut(s) | 325, 373, 716, 1077 |
| CviAII | CATG | 3 cut(s) | 112, 288, 958 |
| CviQI | GTAC | 4 cut(s) | 325, 373, 716, 1077 |
| DdeI | CTNAG | 3 cut(s) | 981, 997, 1092 |
| DpnI | GATC | 5 cut(s) | 175, 252, 344, 412, 512 |
| DpnII | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| DriI | GACNNNNNGTC | 1 cut(s) | 749 |
| EaeI | YGGCCR | 2 cut(s) | 18, 255 |
| EagI | CGGCCG | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 1 cut(s) | 53 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 749 |
| EarI | CTCTTC | 1 cut(s) | 53 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| EclXI | CGGCCG | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 763 |
| Eco52I | CGGCCG | 1 cut(s) | 255 |
| Eco81I | CCTNAGG | 1 cut(s) | 1092 |
| EcoRII | CCWGG | 1 cut(s) | 747 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 763 |
| ErhI | CCWWGG | 2 cut(s) | 287, 763 |
| Esp3I | CGTCTC | 1 cut(s) | 32 |
| FaeI | CATG | 3 cut(s) | 115, 291, 961 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 3 cut(s) | 111, 287, 957 |
| FauI | CCCGC | 2 cut(s) | 129, 955 |
| Fnu4HI | GCNGC | 4 cut(s) | 21, 33, 151, 1056 |
| FokI | GGATG | 3 cut(s) | 67, 391, 866 |
| Fsp4HI | GCNGC | 4 cut(s) | 21, 33, 151, 1056 |
| FspBI | CTAG | 3 cut(s) | 575, 651, 929 |
| FspI | TGCGCA | 1 cut(s) | 497 |
| GlaI | GCGC | 3 cut(s) | 135, 149, 497 |
| GluI | GCNGC | 4 cut(s) | 21, 33, 151, 1056 |
| GsaI | CCCAGC | 1 cut(s) | 700 |
| GsuI | CTGGAG | 2 cut(s) | 237, 663 |
| HaeIII | GGCC | 7 cut(s) | 20, 64, 257, 286, 404, 883, 921 |
| HapII | CCGG | 5 cut(s) | 202, 254, 401, 481, 775 |
| HhaI | GCGC | 3 cut(s) | 136, 150, 498 |
| Hin1I | GRCGYC | 2 cut(s) | 365, 564 |
| Hin1II | CATG | 3 cut(s) | 115, 291, 961 |
| Hin6I | GCGC | 3 cut(s) | 134, 148, 496 |
| HinP1I | GCGC | 3 cut(s) | 134, 148, 496 |
| HincII | GTYRAC | 1 cut(s) | 770 |
| HindII | GTYRAC | 1 cut(s) | 770 |
| HindIII | AAGCTT | 1 cut(s) | 122 |
| HinfI | GANTC | 4 cut(s) | 490, 755, 847, 995 |
| HpaII | CCGG | 5 cut(s) | 202, 254, 401, 481, 775 |
| HphI | GGTGA | 3 cut(s) | 199, 800, 1004 |
| Hpy166II | GTNNAC | 2 cut(s) | 537, 770 |
| Hpy188I | TCNGA | 5 cut(s) | 173, 250, 338, 349, 415 |
| Hpy188III | TCNNGA | 3 cut(s) | 662, 680, 851 |
| Hpy8I | GTNNAC | 2 cut(s) | 537, 770 |
| Hpy99I | CGWCG | 1 cut(s) | 370 |
| HpyAV | CCTTC | 4 cut(s) | 271, 872, 1000, 1093 |
| HpyCH4III | ACNGT | 4 cut(s) | 230, 445, 609, 873 |
| HpyCH4IV | ACGT | 5 cut(s) | 25, 76, 365, 383, 564 |
| HpyCH4V | TGCA | 4 cut(s) | 14, 314, 320, 857 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 20, 29, 41, 311, 447, 889 |
| HpyF3I | CTNAG | 3 cut(s) | 981, 997, 1092 |
| HpySE526I | ACGT | 5 cut(s) | 25, 76, 365, 383, 564 |
| Hsp92I | GRCGYC | 2 cut(s) | 365, 564 |
| Hsp92II | CATG | 3 cut(s) | 115, 291, 961 |
| HspAI | GCGC | 3 cut(s) | 134, 148, 496 |
| Kzo9I | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| LmnI | GCTCC | 2 cut(s) | 310, 727 |
| Lsp1109I | GCAGC | 2 cut(s) | 44, 1042 |
| LweI | GCATC | 2 cut(s) | 844, 1029 |
| MabI | ACCWGGT | 1 cut(s) | 747 |
| MaeI | CTAG | 3 cut(s) | 575, 651, 929 |
| MaeII | ACGT | 5 cut(s) | 25, 76, 365, 383, 564 |
| MaeIII | GTNAC | 2 cut(s) | 859, 992 |
| MalI | GATC | 5 cut(s) | 175, 252, 344, 412, 512 |
| MbiI | CCGCTC | 1 cut(s) | 153 |
| MboI | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| MboII | GAAGA | 6 cut(s) | 70, 233, 569, 625, 1015, 1039 |
| MfeI | CAATTG | 2 cut(s) | 6, 309 |
| MflI | RGATCY | 2 cut(s) | 250, 342 |
| MluCI | AATT | 6 cut(s) | 6, 309, 420, 821, 944, 1065 |
| MlyI | GAGTC | 3 cut(s) | 484, 764, 989 |
| MmeI | TCCRAC | 2 cut(s) | 855, 1110 |
| MseI | TTAA | 1 cut(s) | 1117 |
| MslI | CAYNNNNRTG | 1 cut(s) | 503 |
| MspI | CCGG | 5 cut(s) | 202, 254, 401, 481, 775 |
| MspR9I | CCNGG | 3 cut(s) | 203, 749, 776 |
| MunI | CAATTG | 2 cut(s) | 6, 309 |
| MvaI | CCWGG | 1 cut(s) | 749 |
| MvnI | CGCG | 2 cut(s) | 136, 148 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 20, 29, 41, 311, 447, 889 |
| NciI | CCSGG | 2 cut(s) | 203, 776 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeII | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| NlaIII | CATG | 3 cut(s) | 115, 291, 961 |
| NlaIV | GGNNCC | 3 cut(s) | 354, 396, 1011 |
| NmeAIII | GCCGAG | 1 cut(s) | 1068 |
| NmuCI | GTSAC | 1 cut(s) | 992 |
| NsbI | TGCGCA | 1 cut(s) | 497 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 152 |
| PfeI | GAWTC | 1 cut(s) | 847 |
| PkrI | GCNGC | 4 cut(s) | 22, 34, 152, 1057 |
| PleI | GAGTC | 3 cut(s) | 484, 763, 989 |
| PpsI | GAGTC | 3 cut(s) | 484, 763, 989 |
| Psp6I | CCWGG | 1 cut(s) | 747 |
| PspFI | CCCAGC | 1 cut(s) | 696 |
| PspGI | CCWGG | 1 cut(s) | 747 |
| PspN4I | GGNNCC | 3 cut(s) | 354, 396, 1011 |
| PspPI | GGNCC | 2 cut(s) | 284, 881 |
| PsuI | RGATCY | 2 cut(s) | 250, 342 |
| RsaI | GTAC | 4 cut(s) | 326, 374, 717, 1078 |
| RsaNI | GTAC | 4 cut(s) | 325, 373, 716, 1077 |
| RseI | CAYNNNNRTG | 1 cut(s) | 503 |
| SaqAI | TTAA | 1 cut(s) | 1117 |
| SatI | GCNGC | 4 cut(s) | 21, 33, 151, 1056 |
| Sau3AI | GATC | 5 cut(s) | 173, 250, 342, 410, 510 |
| Sau96I | GGNCC | 2 cut(s) | 284, 881 |
| SchI | GAGTC | 3 cut(s) | 484, 764, 989 |
| ScrFI | CCNGG | 3 cut(s) | 203, 749, 776 |
| SexAI | ACCWGGT | 1 cut(s) | 747 |
| SfaNI | GCATC | 2 cut(s) | 844, 1029 |
| SfcI | CTRYAG | 1 cut(s) | 864 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 503 |
| Sse9I | AATT | 6 cut(s) | 6, 309, 420, 821, 944, 1065 |
| SsiI | CCGC | 5 cut(s) | 21, 50, 136, 151, 962 |
| SspMI | CTAG | 3 cut(s) | 575, 651, 929 |
| StyD4I | CCNGG | 3 cut(s) | 201, 747, 774 |
| StyI | CCWWGG | 2 cut(s) | 287, 763 |
| TaaI | ACNGT | 4 cut(s) | 230, 445, 609, 873 |
| TaiI | ACGT | 5 cut(s) | 28, 79, 368, 386, 567 |
| TaqI | TCGA | 3 cut(s) | 409, 513, 753 |
| TasI | AATT | 6 cut(s) | 6, 309, 420, 821, 944, 1065 |
| TatI | WGTACW | 1 cut(s) | 372 |
| TauI | GCSGC | 2 cut(s) | 23, 153 |
| TfiI | GAWTC | 1 cut(s) | 847 |
| Tru1I | TTAA | 1 cut(s) | 1117 |
| Tru9I | TTAA | 1 cut(s) | 1117 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 992 |
| TseI | GCWGC | 2 cut(s) | 32, 1055 |
| Tsp45I | GTSAC | 1 cut(s) | 992 |
| TspDTI | ATGAA | 1 cut(s) | 100 |
| TspGWI | ACGGA | 2 cut(s) | 355, 502 |
| TspRI | CASTG | 1 cut(s) | 72 |
| XspI | CTAG | 3 cut(s) | 575, 651, 929 |
| ZraI | GACGTC | 2 cut(s) | 366, 565 |