Rmu_sc0011509.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011509.1
OG0000308
Physical Location & Seq
Reverse (-)
12890 .. 13753
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011509.1_g000006.1.cds

Sequence Viewer

Length: 621 bp
atggcatgtcaatggggatcttggggtggagccggcagtagaggattgggttgtgctcactttctcagatctgatggacagagaccgtgtttggcgtggtggccctggggtttcaacggagcccctgtagcactagcggaatatgatggcattgaaatggttgagcatgtgttggcagtgttgctgcaacgttcctcctattgggttacgctgatggatgtgccctcagagttcagatcggaaagggtgatgtgcatgattggcagcgccataggtgatctcaaggagtgggacattctggctttccgacgagggttacaatgttctgggccgaggctggaggacggagttgggaatgtcggacctagtccgagtgggcagacaggcggtgctggagatgtagcactggggatcagggttccttccttccccaaagggctcggcgtcgagtcactattcgggaaattgaagaaaacaatgatcatgcatctcccactaccaggaagaggagaaagagaacaggttgttgagcccaaaagaaaattggagccaaacacaggtgatgtctcggtgtcctcgaaaaagctacggctgagtttggctattgataagcgcaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.35

Weight (kDa)

8.88

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 137, 387
AclI AACGTT 1 cut(s) 190
AclWI GGATC 2 cut(s) 25, 419
AcyI GRCGYC 1 cut(s) 444
AfiI CCNNNNNNNGG 4 cut(s) 201, 500, 506, 557
AgsI TTSAA 3 cut(s) 115, 155, 469
AjnI CCWGG 2 cut(s) 104, 499
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 76, 571
AlwI GGATC 2 cut(s) 25, 419
AoxI GGCC 2 cut(s) 101, 329
ApeKI GCWGC 2 cut(s) 184, 264
AspLEI GCGC 2 cut(s) 269, 615
AspS9I GGNCC 3 cut(s) 102, 329, 362
AsuHPI GGTGA 3 cut(s) 259, 287, 572
AvaII GGWCC 1 cut(s) 362
BaeGI GKGCMC 1 cut(s) 225
BanII GRGCYC 3 cut(s) 124, 441, 534
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 171, 276
BccI CCATC 3 cut(s) 68, 140, 208
BceAI ACGGC 1 cut(s) 605
BciT130I CCWGG 2 cut(s) 106, 501
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 76, 571
BfaI CTAG 2 cut(s) 134, 366
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 270
BglII AGATCT 1 cut(s) 68
BisI GCNGC 2 cut(s) 185, 265
BlsI GCNGC 2 cut(s) 186, 266
Bme1390I CCNGG 2 cut(s) 106, 501
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 3 cut(s) 102, 329, 362
BmiI GGNNCC 4 cut(s) 31, 121, 420, 549
BmrFI CCNGG 2 cut(s) 106, 501
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 496
BmuI ACTGGG 1 cut(s) 416
BpmI CTGGAG 2 cut(s) 359, 414
BpuEI CTTGAG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 104, 105, 332
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 500, 506, 557
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 106, 501
BseDI CCNNGG 3 cut(s) 104, 105, 332
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 4 cut(s) 201, 500, 506, 557
BseMII CTCAG 3 cut(s) 79, 240, 584
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 2 cut(s) 171, 276
BshFI GGCC 2 cut(s) 103, 331
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 4 cut(s) 201, 500, 506, 557
BsmAI GTCTC 2 cut(s) 76, 571
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 2 cut(s) 103, 331
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 5 cut(s) 58, 124, 225, 441, 534
Bsp143I GATC 6 cut(s) 17, 68, 236, 277, 411, 480
BspACI CCGC 2 cut(s) 137, 387
BspANI GGCC 2 cut(s) 103, 331
BspCNI CTCAG 3 cut(s) 78, 239, 585
BspLI GGNNCC 4 cut(s) 31, 121, 420, 549
BspPI GGATC 2 cut(s) 25, 419
BspTNI GGTCTC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 104, 105, 332
BssMI GATC 6 cut(s) 17, 68, 236, 277, 411, 480
BssNI GRCGYC 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 106, 501
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 499
BstACI GRCGYC 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 65, 226, 593
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 269, 615
BstKTI GATC 6 cut(s) 20, 71, 239, 280, 414, 483
BstMAI GTCTC 2 cut(s) 76, 571
BstMBI GATC 6 cut(s) 17, 68, 236, 277, 411, 480
BstMWI GCNNNNNNNGC 2 cut(s) 128, 261
BstNI CCWGG 2 cut(s) 106, 501
BstNSI RCATGY 2 cut(s) 9, 170
BstSCI CCNGG 2 cut(s) 104, 499
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 171, 276
BstX2I RGATCY 2 cut(s) 17, 68
BstYI RGATCY 2 cut(s) 17, 68
BsuRI GGCC 2 cut(s) 103, 331
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 404
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 269, 615
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 102, 329, 362
CseI GACGC 1 cut(s) 433
CviAII CATG 4 cut(s) 6, 167, 256, 484
DdeI CTNAG 3 cut(s) 65, 226, 593
DpnI GATC 6 cut(s) 19, 70, 238, 279, 413, 482
DpnII GATC 6 cut(s) 17, 68, 236, 277, 411, 480
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Eco24I GRGCYC 3 cut(s) 124, 441, 534
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 104, 499
EcoT22I ATGCAT 1 cut(s) 489
EcoT38I GRGCYC 3 cut(s) 124, 441, 534
FaeI CATG 4 cut(s) 9, 170, 259, 487
FaiI YATR 6 cut(s) 7, 144, 168, 257, 272, 485
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 5, 166, 255, 483
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 185, 265
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 3 cut(s) 124, 441, 534
Fsp4HI GCNGC 2 cut(s) 185, 265
FspBI CTAG 2 cut(s) 134, 366
GlaI GCGC 2 cut(s) 268, 614
GluI GCNGC 2 cut(s) 185, 265
GsuI CTGGAG 2 cut(s) 359, 414
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 103, 331
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 269, 615
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 4 cut(s) 9, 170, 259, 487
Hin6I GCGC 2 cut(s) 267, 613
HinP1I GCGC 2 cut(s) 267, 613
HinfI GANTC 1 cut(s) 449
HpaII CCGG 1 cut(s) 33
HphI GGTGA 3 cut(s) 259, 287, 572
Hpy188I TCNGA 8 cut(s) 68, 73, 229, 236, 241, 308, 362, 372
Hpy188III TCNNGA 1 cut(s) 460
Hpy99I CGWCG 2 cut(s) 312, 449
HpyAV CCTTC 2 cut(s) 432, 436
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 3 cut(s) 187, 255, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 261
HpyF3I CTNAG 3 cut(s) 65, 226, 593
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 4 cut(s) 9, 170, 259, 487
HspAI GCGC 2 cut(s) 267, 613
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 6 cut(s) 17, 68, 236, 277, 411, 480
LmnI GCTCC 3 cut(s) 29, 119, 547
Lsp1109I GCAGC 2 cut(s) 171, 276
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 134, 366
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 3 cut(s) 205, 315, 450
MalI GATC 6 cut(s) 19, 70, 238, 279, 413, 482
MboI GATC 6 cut(s) 17, 68, 236, 277, 411, 480
MboII GAAGA 2 cut(s) 481, 516
MflI RGATCY 2 cut(s) 17, 68
MhlI GDGCHC 5 cut(s) 58, 124, 225, 441, 534
MluCI AATT 2 cut(s) 464, 542
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 2 cut(s) 331, 340
MnlI CCTC 8 cut(s) 35, 205, 235, 305, 327, 334, 500, 586
Mph1103I ATGCAT 1 cut(s) 489
MroNI GCCGGC 1 cut(s) 32
MslI CAYNNNNRTG 2 cut(s) 10, 155
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 2 cut(s) 106, 501
MvaI CCWGG 2 cut(s) 106, 501
MwoI GCNNNNNNNGC 2 cut(s) 128, 261
NaeI GCCGGC 1 cut(s) 34
NdeII GATC 6 cut(s) 17, 68, 236, 277, 411, 480
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 4 cut(s) 9, 170, 259, 487
NlaIV GGNNCC 4 cut(s) 31, 121, 420, 549
NmeAIII GCCGAG 2 cut(s) 357, 420
NmuCI GTSAC 1 cut(s) 450
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 2 cut(s) 9, 170
PasI CCCWGGG 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PdiI GCCGGC 1 cut(s) 34
PflFI GACNNNGTC 1 cut(s) 366
PkrI GCNGC 2 cut(s) 186, 266
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 104, 499
PspGI CCWGG 2 cut(s) 104, 499
PspN4I GGNNCC 4 cut(s) 31, 121, 420, 549
PspPI GGNCC 3 cut(s) 102, 329, 362
PsuI RGATCY 2 cut(s) 17, 68
PsyI GACNNNGTC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 10, 155
SatI GCNGC 2 cut(s) 185, 265
Sau3AI GATC 6 cut(s) 17, 68, 236, 277, 411, 480
Sau96I GGNCC 3 cut(s) 102, 329, 362
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 106, 501
SduI GDGCHC 5 cut(s) 58, 124, 225, 441, 534
SetI ASST 6 cut(s) 193, 277, 367, 525, 562, 588
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 10, 155
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 464, 542
SsiI CCGC 2 cut(s) 137, 387
SspMI CTAG 2 cut(s) 134, 366
StyD4I CCNGG 2 cut(s) 104, 499
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 447, 578
TasI AATT 2 cut(s) 464, 542
TscAI CASTG 2 cut(s) 183, 411
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 2 cut(s) 184, 264
Tsp45I GTSAC 1 cut(s) 450
TspGWI ACGGA 2 cut(s) 132, 360
TspRI CASTG 2 cut(s) 183, 411
Tth111I GACNNNGTC 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 362
XceI RCATGY 2 cut(s) 9, 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XspI CTAG 2 cut(s) 134, 366
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.