Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004952.1

Orthogroup ID

OG0000308

Physical Location & Seq

Genomic Coordinates Forward (+)

39824 .. 40159

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004952.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggcaattgatccaatggccgccagtttgacctcctccctagcactggctaatggaaagaaactggtggacctgcgtccatccaaaggattaagacaacccgaagcattcatggtggggaagctgctcacggcgcgggaatattctcgtcgctctttccttggcatgttcctatctgcatggcgaatcaatggcagactgagtgttgaagagatcgaagaagatgacggggttctattcacattcacaaacccctctgatgtggatagggtttggaaaggaggaccgtggggctacaacaaggctccaatagctgctaacttactaatcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

9.15

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24891 FvH4_4g09031
rosa_multiflora	Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii	Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa	Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha	Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccII	CGCG	1 cut(s)	136
AciI	CCGC	2 cut(s)	21, 136
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	46, 86
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	2 cut(s)	124, 314
AluI	AGCT	2 cut(s)	124, 314
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	124, 314
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	70, 284
AvaII	GGWCC	2 cut(s)	70, 284
BbvI	GCAGC	2 cut(s)	111, 301
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	21, 125, 315
BlsI	GCNGC	3 cut(s)	22, 126, 316
Bme18I	GGWCC	2 cut(s)	70, 284
BmgT120I	GGNCC	2 cut(s)	70, 284
BmiI	GGNNCC	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	160, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 86
Bse1I	ACTGG	3 cut(s)	24, 51, 69
BseDI	CCNNGG	2 cut(s)	160, 287
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	46, 86
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	3 cut(s)	24, 51, 69
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	111, 301
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	46, 86
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	10, 213
BspACI	CCGC	2 cut(s)	21, 136
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	24, 51, 69
BssECI	CCNNGG	2 cut(s)	160, 287
BssMI	GATC	2 cut(s)	10, 213
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	13, 216
BstMBI	GATC	2 cut(s)	10, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 311
BstNSI	RCATGY	1 cut(s)	169
BstPAI	GACNNNNGTC	1 cut(s)	75
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	111, 301
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	70, 284
CseI	GACGC	1 cut(s)	65
CviAII	CATG	3 cut(s)	112, 166, 180
CviJI	RGCY	6 cut(s)	20, 50, 124, 294, 305, 314
CviKI_1	RGCY	6 cut(s)	20, 50, 124, 294, 305, 314
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	2 cut(s)	12, 215
DpnII	GATC	2 cut(s)	10, 213
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	70, 284
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	115, 169, 183
FaiI	YATR	3 cut(s)	113, 167, 181
FatI	CATG	3 cut(s)	111, 165, 179
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	21, 125, 315
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	21, 125, 315
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	21, 125, 315
HaeIII	GGCC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	115, 169, 183
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 311
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	115, 169, 183
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	10, 213
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	4 cut(s)	32, 37, 50, 86
Lsp1109I	GCAGC	2 cut(s)	111, 301
MaeI	CTAG	1 cut(s)	41
MalI	GATC	2 cut(s)	12, 215
MboI	GATC	2 cut(s)	10, 213
MboII	GAAGA	3 cut(s)	221, 230, 233
MfeI	CAATTG	1 cut(s)	6
MluCI	AATT	1 cut(s)	6
MnlI	CCTC	4 cut(s)	43, 46, 265, 275
MseI	TTAA	1 cut(s)	92
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	107
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	133, 311
NdeII	GATC	2 cut(s)	10, 213
NlaIII	CATG	3 cut(s)	115, 169, 183
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	169
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	22, 126, 316
PshAI	GACNNNNGTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	70, 284
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	3 cut(s)	21, 125, 315
Sau3AI	GATC	2 cut(s)	10, 213
Sau96I	GGNCC	2 cut(s)	70, 284
SetI	ASST	4 cut(s)	35, 75, 126, 316
SinI	GGWCC	2 cut(s)	70, 284
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	2 cut(s)	21, 136
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	6
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	124, 314
TspDTI	ATGAA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	70, 284
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.