Rmu_sc0023412.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023412.1
OG0000308
Physical Location & Seq
Reverse (-)
2 .. 1246
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023412.1_g000001.1.cds

Sequence Viewer

Length: 1245 bp
atggaggacattgacgctatggcaacccgactggcgtcgtctttggcactggcggaggggaaaagaacactggatctgaggccatccaagggcaagggtctacgccaaccagaggtgtatatggttggcaagttactcacggcaagggagtataggaaacgttcttttttggggatgtttcgatctgcatggcatgttggtggagatctgcaggtggagccggcagcaggggaccgagttcttttctcattctctgatccggtggaccgcgctcgtgtgtggcgtggcggtccgtggggtttcaaccgagcccatgtagcactagcggaatatgatgggatcgaaccagtcaaacaagtgctgctgcaacgttcttcctattgggttaccttgttggatgtgccgccgacgttccgatctgaaagagtgatgcgtatgattggcaacaccattggtgatctaaaggaatgggaccgaccggcattccggcgaggtgtactgcaggtcagggtggagatcgagttttcacagcccatacttactcaacgtctctttcggttggaggaacgagtggaggtgctggtgaggttccgttttgacaaaatatttagcagatgcaactgctgtggatttgtaacccatgtggggttaccgtgctctggcccggtgctggaagatagggttggacatgataggcctcgttcggtggagcagcgtagcggtgctgctgcaacaacgttggcggttgcatcagaggttagggcaaaccccagtggacctactttggtcttcaaggcacaagttccttctgggatagctgaaaccttagcatctatgtctgcaggttctttccttcctcagagtcctcgacgtcaagtcatcatccgagaaattaaagaaaacaatgagcatgcatctctaattgcggggaagaggaggaaaagaaccggtgatgtttcggtgtctccgaagaagccaaggctgagtttggcaattggtaagcacaatattgatgctgccactatgggtttaattgcacctgctatgagtaagtcaaacaagaagaagcgtggtcgacctgctggtagtcttaacaagataccatatggtactgctggtaaggaaaaaaaacactccgaggcaagtagtgagaagaagaagggctctaaggcccgaaagaatttaaatggggacttggcaactgttggcgactccaaccgtaaggggaaggagttggatctagtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

415

Amino Acids

45.92

Weight (kDa)

10.3

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 202, 1048
AatII GACGTC 1 cut(s) 874
Acc36I ACCTGC 5 cut(s) 202, 493, 833, 1048, 1087
AccI GTMKAC 2 cut(s) 100, 1075
AccII CGCG 1 cut(s) 270
AciI CCGC 8 cut(s) 53, 268, 288, 326, 404, 720, 743, 926
AclI AACGTT 3 cut(s) 160, 370, 737
AclWI GGATC 3 cut(s) 81, 251, 347
AcsI RAATTY 1 cut(s) 1180
AcyI GRCGYC 2 cut(s) 35, 871
AfaI GTAC 2 cut(s) 498, 1111
AfiI CCNNNNNNNGG 6 cut(s) 89, 112, 227, 645, 659, 670
AgeI ACCGGT 1 cut(s) 947
AgsI TTSAA 2 cut(s) 304, 793
AhdI GACNNNNNGTC 1 cut(s) 875
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 1 cut(s) 818
AluI AGCT 1 cut(s) 818
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 2 cut(s) 554, 969
AlwI GGATC 3 cut(s) 81, 251, 347
AoxI GGCC 4 cut(s) 80, 661, 695, 1170
ApeKI GCWGC 7 cut(s) 224, 361, 364, 712, 725, 728, 1016
ApoI RAATTY 1 cut(s) 1180
AsiGI ACCGGT 1 cut(s) 947
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 7 cut(s) 232, 265, 290, 472, 662, 776, 1171
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 3 cut(s) 467, 595, 962
AvaII GGWCC 5 cut(s) 232, 265, 290, 472, 776
BanII GRGCYC 2 cut(s) 313, 1166
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 781
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 7 cut(s) 236, 348, 351, 712, 715, 724, 1003
BccI CCATC 2 cut(s) 91, 329
BceAI ACGGC 1 cut(s) 156
BcnI CCSGG 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 554, 969
BfaI CTAG 2 cut(s) 323, 1241
BfmI CTRYAG 3 cut(s) 209, 500, 840
BfuAI ACCTGC 5 cut(s) 202, 493, 833, 1048, 1087
BglII AGATCT 1 cut(s) 205
BisI GCNGC 8 cut(s) 225, 362, 365, 404, 713, 726, 729, 1017
BlsI GCNGC 8 cut(s) 226, 363, 366, 405, 714, 727, 730, 1018
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 5 cut(s) 232, 265, 290, 472, 776
BmeRI GACNNNNNGTC 1 cut(s) 875
BmgT120I GGNCC 7 cut(s) 232, 265, 290, 472, 662, 776, 1171
BmiI GGNNCC 4 cut(s) 219, 233, 473, 590
BmrFI CCNGG 1 cut(s) 665
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 6 cut(s) 420, 605, 758, 839, 923, 1003
BmuI ACTGGG 1 cut(s) 765
BoxI GACNNNNGTC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 781
Bpu10I CCTNAGC 1 cut(s) 826
BpuMI CCSGG 1 cut(s) 665
BsaHI GRCGYC 2 cut(s) 35, 871
BsaJI CCNNGG 4 cut(s) 87, 293, 977, 1137
BsaWI WCCGGW 2 cut(s) 259, 947
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 112, 227, 645, 659, 670
Bse118I RCCGGY 3 cut(s) 220, 478, 947
Bse1I ACTGG 5 cut(s) 36, 54, 75, 347, 771
BseDI CCNNGG 4 cut(s) 87, 293, 977, 1137
BseGI GGATG 4 cut(s) 83, 180, 403, 882
BseLI CCNNNNNNNGG 6 cut(s) 89, 112, 227, 645, 659, 670
BseMII CTCAG 3 cut(s) 68, 872, 974
BseNI ACTGG 5 cut(s) 36, 54, 75, 347, 771
BseRI GAGGAG 1 cut(s) 949
BseXI GCAGC 7 cut(s) 236, 348, 351, 712, 715, 724, 1003
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 479
BshFI GGCC 4 cut(s) 82, 663, 697, 1172
BshTI ACCGGT 1 cut(s) 947
BsiEI CGRYCG 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 6 cut(s) 221, 260, 479, 487, 665, 948
BslFI GGGAC 3 cut(s) 245, 485, 1205
BslI CCNNNNNNNGG 6 cut(s) 89, 112, 227, 645, 659, 670
BsmAI GTCTC 2 cut(s) 554, 969
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 3 cut(s) 245, 485, 1205
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 4 cut(s) 82, 663, 697, 1172
Bsp1286I GDGCHC 3 cut(s) 313, 659, 1166
Bsp143I GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
BspACI CCGC 8 cut(s) 53, 268, 288, 326, 404, 720, 743, 926
BspANI GGCC 4 cut(s) 82, 663, 697, 1172
BspCNI CTCAG 3 cut(s) 69, 871, 975
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 4 cut(s) 219, 233, 473, 590
BspMAI CTGCAG 3 cut(s) 213, 504, 844
BspMI ACCTGC 5 cut(s) 202, 493, 833, 1048, 1087
BspPI GGATC 3 cut(s) 81, 251, 347
BsrFI RCCGGY 3 cut(s) 220, 478, 947
BsrI ACTGG 5 cut(s) 36, 54, 75, 347, 771
BssAI RCCGGY 3 cut(s) 220, 478, 947
BssECI CCNNGG 4 cut(s) 87, 293, 977, 1137
BssMI GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
BssNI GRCGYC 2 cut(s) 35, 871
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 2 cut(s) 87, 977
Bst2BI CACGAG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 654, 1204, 1220
Bst6I CTCTTC 1 cut(s) 926
BstACI GRCGYC 2 cut(s) 35, 871
BstC8I GCNNGC 2 cut(s) 222, 912
BstDEI CTNAG 5 cut(s) 77, 826, 858, 983, 1167
BstDSI CCRYGG 1 cut(s) 293
BstEII GGTNACC 2 cut(s) 385, 648
BstF5I GGATG 4 cut(s) 83, 180, 403, 882
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 9 cut(s) 76, 185, 208, 259, 342, 419, 460, 519, 1240
BstMAI GTCTC 2 cut(s) 554, 969
BstMBI GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
BstMCI CGRYCG 1 cut(s) 479
BstMWI GCNNNNNNNGC 2 cut(s) 217, 317
BstNSI RCATGY 2 cut(s) 197, 914
BstPAI GACNNNNGTC 1 cut(s) 34
BstPI GGTNACC 2 cut(s) 385, 648
BstSCI CCNGG 1 cut(s) 663
BstSFI CTRYAG 3 cut(s) 209, 500, 840
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 7 cut(s) 236, 348, 351, 712, 715, 724, 1003
BstV2I GAAGAC 1 cut(s) 781
BstX2I RGATCY 3 cut(s) 73, 205, 1237
BstYI RGATCY 3 cut(s) 73, 205, 1237
BsuRI GGCC 4 cut(s) 82, 663, 697, 1172
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 4 cut(s) 83, 180, 403, 882
BtsIMutI CAGTG 3 cut(s) 47, 68, 778
BveI ACCTGC 5 cut(s) 202, 493, 833, 1048, 1087
Cac8I GCNNGC 2 cut(s) 222, 912
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 3 cut(s) 220, 478, 947
Cfr13I GGNCC 7 cut(s) 232, 265, 290, 472, 662, 776, 1171
CpoI CGGWCCG 1 cut(s) 290
CseI GACGC 2 cut(s) 23, 24
Csp6I GTAC 2 cut(s) 497, 1110
CspAI ACCGGT 1 cut(s) 947
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CspI CGGWCCG 1 cut(s) 290
CviAII CATG 6 cut(s) 189, 194, 314, 641, 689, 911
CviQI GTAC 2 cut(s) 497, 1110
DdeI CTNAG 5 cut(s) 77, 826, 858, 983, 1167
DpnI GATC 9 cut(s) 75, 184, 207, 258, 341, 418, 459, 518, 1239
DpnII GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
DraI TTTAAA 1 cut(s) 1185
DriI GACNNNNNGTC 1 cut(s) 875
Eam1104I CTCTTC 1 cut(s) 926
Eam1105I GACNNNNNGTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 926
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 87, 977
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 2 cut(s) 313, 1166
Eco47I GGWCC 5 cut(s) 232, 265, 290, 472, 776
Eco91I GGTNACC 2 cut(s) 385, 648
EcoO65I GGTNACC 2 cut(s) 385, 648
EcoT14I CCWWGG 2 cut(s) 87, 977
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 2 cut(s) 313, 1166
ErhI CCWWGG 2 cut(s) 87, 977
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 6 cut(s) 192, 197, 317, 644, 692, 914
FaqI GGGAC 3 cut(s) 245, 485, 1205
FatI CATG 6 cut(s) 188, 193, 313, 640, 688, 910
FauI CCCGC 1 cut(s) 919
FauNDI CATATG 1 cut(s) 1105
FblI GTMKAC 2 cut(s) 100, 1075
Fnu4HI GCNGC 8 cut(s) 225, 362, 365, 404, 713, 726, 729, 1017
FokI GGATG 4 cut(s) 70, 187, 410, 869
FriOI GRGCYC 2 cut(s) 313, 1166
Fsp4HI GCNGC 8 cut(s) 225, 362, 365, 404, 713, 726, 729, 1017
FspBI CTAG 2 cut(s) 323, 1241
GlaI GCGC 1 cut(s) 271
GluI GCNGC 8 cut(s) 225, 362, 365, 404, 713, 726, 729, 1017
HaeIII GGCC 4 cut(s) 82, 663, 697, 1172
HapII CCGG 6 cut(s) 221, 260, 479, 487, 665, 948
HgaI GACGC 2 cut(s) 23, 24
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 2 cut(s) 35, 871
Hin1II CATG 6 cut(s) 192, 197, 317, 644, 692, 914
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 1076
HindII GTYRAC 1 cut(s) 1076
HinfI GANTC 2 cut(s) 862, 1211
HpaII CCGG 6 cut(s) 221, 260, 479, 487, 665, 948
HphI GGTGA 3 cut(s) 467, 595, 962
Hpy166II GTNNAC 5 cut(s) 101, 265, 497, 776, 1076
Hpy188I TCNGA 9 cut(s) 78, 256, 416, 421, 754, 861, 887, 969, 1138
Hpy8I GTNNAC 5 cut(s) 101, 265, 497, 776, 1076
Hpy99I CGWCG 3 cut(s) 40, 412, 873
HpyAV CCTTC 4 cut(s) 816, 863, 1153, 1222
HpyCH4III ACNGT 3 cut(s) 654, 1204, 1220
HpyCH4IV ACGT 6 cut(s) 160, 370, 410, 547, 737, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 317
HpyF3I CTNAG 5 cut(s) 77, 826, 858, 983, 1167
HpySE526I ACGT 6 cut(s) 160, 370, 410, 547, 737, 871
Hsp92I GRCGYC 2 cut(s) 35, 871
Hsp92II CATG 6 cut(s) 192, 197, 317, 644, 692, 914
HspAI GCGC 1 cut(s) 270
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
LmnI GCTCC 2 cut(s) 217, 709
Lsp1109I GCAGC 7 cut(s) 236, 348, 351, 712, 715, 724, 1003
LweI GCATC 6 cut(s) 420, 605, 758, 839, 923, 1003
MaeI CTAG 2 cut(s) 323, 1241
MaeII ACGT 6 cut(s) 160, 370, 410, 547, 737, 871
MaeIII GTNAC 4 cut(s) 132, 385, 634, 648
MalI GATC 9 cut(s) 75, 184, 207, 258, 341, 418, 459, 518, 1239
MboI GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
MboII GAAGA 8 cut(s) 366, 686, 781, 943, 982, 1075, 1165, 1168
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 3 cut(s) 73, 205, 1237
MhlI GDGCHC 3 cut(s) 313, 659, 1166
MluCI AATT 5 cut(s) 891, 921, 993, 1032, 1180
MlyI GAGTC 2 cut(s) 871, 1205
MmeI TCCRAC 5 cut(s) 375, 540, 664, 1215, 1239
Mph1103I ATGCAT 1 cut(s) 916
MroNI GCCGGC 1 cut(s) 220
MseI TTAA 4 cut(s) 894, 1031, 1092, 1184
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 6 cut(s) 221, 260, 479, 487, 665, 948
MspR9I CCNGG 1 cut(s) 665
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 482
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 217, 317
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 665
NdeI CATATG 1 cut(s) 1105
NdeII GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 6 cut(s) 192, 197, 317, 644, 692, 914
NlaIV GGNNCC 4 cut(s) 219, 233, 473, 590
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 2 cut(s) 197, 914
PaeI GCATGC 1 cut(s) 914
PaqCI CACCTGC 2 cut(s) 202, 1048
PceI AGGCCT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 2 cut(s) 280, 965
PctI GAATGC 1 cut(s) 482
PdiI GCCGGC 1 cut(s) 222
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 8 cut(s) 226, 363, 366, 405, 714, 727, 730, 1018
PleI GAGTC 2 cut(s) 870, 1205
PpsI GAGTC 2 cut(s) 870, 1205
PshAI GACNNNNGTC 1 cut(s) 34
Psp1406I AACGTT 3 cut(s) 160, 370, 737
PspEI GGTNACC 2 cut(s) 385, 648
PspN4I GGNNCC 4 cut(s) 219, 233, 473, 590
PspPI GGNCC 7 cut(s) 232, 265, 290, 472, 662, 776, 1171
PstI CTGCAG 3 cut(s) 213, 504, 844
PsuI RGATCY 3 cut(s) 73, 205, 1237
RsaI GTAC 2 cut(s) 498, 1111
RsaNI GTAC 2 cut(s) 497, 1110
RseI CAYNNNNRTG 1 cut(s) 198
Rsr2I CGGWCCG 1 cut(s) 290
RsrII CGGWCCG 1 cut(s) 290
SalI GTCGAC 1 cut(s) 1074
SaqAI TTAA 4 cut(s) 894, 1031, 1092, 1184
SatI GCNGC 8 cut(s) 225, 362, 365, 404, 713, 726, 729, 1017
Sau3AI GATC 9 cut(s) 73, 182, 205, 256, 339, 416, 457, 516, 1237
Sau96I GGNCC 7 cut(s) 232, 265, 290, 472, 662, 776, 1171
SchI GAGTC 2 cut(s) 871, 1205
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 3 cut(s) 313, 659, 1166
SfaNI GCATC 6 cut(s) 420, 605, 758, 839, 923, 1003
SfcI CTRYAG 3 cut(s) 209, 500, 840
SinI GGWCC 5 cut(s) 232, 265, 290, 472, 776
SmiI ATTTAAAT 1 cut(s) 1185
SmiMI CAYNNNNRTG 1 cut(s) 198
SphI GCATGC 1 cut(s) 914
Sse9I AATT 5 cut(s) 891, 921, 993, 1032, 1180
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 8 cut(s) 53, 268, 288, 326, 404, 720, 743, 926
SspI AATATT 2 cut(s) 606, 1009
SspMI CTAG 2 cut(s) 323, 1241
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 2 cut(s) 87, 977
SwaI ATTTAAAT 1 cut(s) 1185
TaaI ACNGT 3 cut(s) 654, 1204, 1220
TaiI ACGT 6 cut(s) 163, 373, 413, 550, 740, 874
TaqI TCGA 5 cut(s) 181, 342, 519, 868, 1075
TaqII GACCGA 2 cut(s) 249, 489
TasI AATT 5 cut(s) 891, 921, 993, 1032, 1180
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 406
Tru1I TTAA 4 cut(s) 894, 1031, 1092, 1184
Tru9I TTAA 4 cut(s) 894, 1031, 1092, 1184
TscAI CASTG 3 cut(s) 54, 75, 778
TseI GCWGC 7 cut(s) 224, 361, 364, 712, 725, 728, 1016
TspGWI ACGGA 2 cut(s) 282, 581
TspRI CASTG 3 cut(s) 54, 75, 778
VpaK11BI GGWCC 5 cut(s) 232, 265, 290, 472, 776
XapI RAATTY 1 cut(s) 1180
XceI RCATGY 2 cut(s) 197, 914
XmiI GTMKAC 2 cut(s) 100, 1075
XspI CTAG 2 cut(s) 323, 1241
ZraI GACGTC 1 cut(s) 872
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.