Rmu_sc0002589.1_g000034

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002589.1
OG0000308
Physical Location & Seq
Forward (+)
185053 .. 185532
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002589.1_g000034.1.cds

Sequence Viewer

Length: 480 bp
atggaggacattgacgctatggcagcccgactagcgtcgtctttggcattggcggaggggaaaagagcagtggatctgaggccatccaagggcaagggtctacgccaaccggaggtgtatatggttggcaagttactcacggcaagggagtataggaaatgttcttttttggggatgtttcgatctgcatggcatgttggtagagagcttcgggtggagccagcagcaggggaccgagttcttttctcattctcagatccggtggaccgcgctcatgtgtggcatggtggtccgtggggtttcaaccgagcccctgtagcactagcagaatatgaagggatcgaaccagttgaacaagtgctgctgcaacattcttcctattgggttacgctattggatgtgtcaccggcgttcccatctgaaagagtgatgcgcatgattggcagtaccattggtgatctgaaggagtgggacatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

159

Amino Acids

17.83

Weight (kDa)

6.43

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 434
AccI GTMKAC 1 cut(s) 100
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 53, 268
AclWI GGATC 3 cut(s) 81, 251, 347
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 89, 112, 227
AgsI TTSAA 2 cut(s) 304, 353
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwI GGATC 3 cut(s) 81, 251, 347
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 23, 224, 361, 364
AspLEI GCGC 2 cut(s) 272, 435
AspS9I GGNCC 3 cut(s) 232, 265, 290
AsuHPI GGTGA 2 cut(s) 396, 467
AvaII GGWCC 3 cut(s) 232, 265, 290
BanII GRGCYC 1 cut(s) 313
BbvI GCAGC 4 cut(s) 35, 236, 348, 351
BccI CCATC 2 cut(s) 91, 424
BceAI ACGGC 1 cut(s) 156
BfaI CTAG 2 cut(s) 32, 323
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 4 cut(s) 24, 225, 362, 365
BlsI GCNGC 4 cut(s) 25, 226, 363, 366
Bme18I GGWCC 3 cut(s) 232, 265, 290
BmgT120I GGNCC 3 cut(s) 232, 265, 290
BmiI GGNNCC 2 cut(s) 219, 233
BmsI GCATC 1 cut(s) 420
BoxI GACNNNNGTC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 87, 293
BsaWI WCCGGW 2 cut(s) 109, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 112, 227
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 87, 293
BseGI GGATG 3 cut(s) 83, 180, 403
BseLI CCNNNNNNNGG 3 cut(s) 89, 112, 227
BseMII CTCAG 2 cut(s) 68, 267
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 4 cut(s) 35, 236, 348, 351
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 3 cut(s) 110, 260, 407
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 89, 112, 227
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 5 cut(s) 73, 182, 256, 339, 457
BspACI CCGC 2 cut(s) 53, 268
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 69, 266
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 219, 233
BspPI GGATC 3 cut(s) 81, 251, 347
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 87, 293
BssMI GATC 5 cut(s) 73, 182, 256, 339, 457
BssT1I CCWWGG 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 77, 253
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 3 cut(s) 83, 180, 403
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 2 cut(s) 272, 435
BstKTI GATC 5 cut(s) 76, 185, 259, 342, 460
BstMBI GATC 5 cut(s) 73, 182, 256, 339, 457
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 441
BstNSI RCATGY 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 4 cut(s) 35, 236, 348, 351
BstX2I RGATCY 2 cut(s) 73, 256
BstYI RGATCY 2 cut(s) 73, 256
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 3 cut(s) 83, 180, 403
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 2 cut(s) 272, 435
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 232, 265, 290
CseI GACGC 2 cut(s) 23, 24
Csp6I GTAC 1 cut(s) 447
CviAII CATG 5 cut(s) 189, 194, 275, 284, 436
CviJI RGCY 5 cut(s) 26, 82, 208, 220, 311
CviKI_1 RGCY 5 cut(s) 26, 82, 208, 220, 311
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 2 cut(s) 77, 253
DpnI GATC 5 cut(s) 75, 184, 258, 341, 459
DpnII GATC 5 cut(s) 73, 182, 256, 339, 457
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 3 cut(s) 232, 265, 290
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 5 cut(s) 192, 197, 278, 287, 439
FaqI GGGAC 1 cut(s) 245
FatI CATG 5 cut(s) 188, 193, 274, 283, 435
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 24, 225, 362, 365
FokI GGATG 3 cut(s) 70, 187, 410
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 4 cut(s) 24, 225, 362, 365
FspAI RTGCGCAY 1 cut(s) 434
FspBI CTAG 2 cut(s) 32, 323
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 2 cut(s) 271, 434
GluI GCNGC 4 cut(s) 24, 225, 362, 365
HaeIII GGCC 1 cut(s) 82
HapII CCGG 3 cut(s) 110, 260, 407
HgaI GACGC 2 cut(s) 23, 24
HhaI GCGC 2 cut(s) 272, 435
Hin1II CATG 5 cut(s) 192, 197, 278, 287, 439
Hin6I GCGC 2 cut(s) 270, 433
HinP1I GCGC 2 cut(s) 270, 433
HpaII CCGG 3 cut(s) 110, 260, 407
HphI GGTGA 2 cut(s) 396, 467
Hpy166II GTNNAC 2 cut(s) 101, 265
Hpy188I TCNGA 4 cut(s) 78, 256, 421, 462
Hpy8I GTNNAC 2 cut(s) 101, 265
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 329, 457
HpyCH4V TGCA 2 cut(s) 188, 367
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 441
HpyF3I CTNAG 2 cut(s) 77, 253
Hsp92II CATG 5 cut(s) 192, 197, 278, 287, 439
HspAI GCGC 2 cut(s) 270, 433
Kzo9I GATC 5 cut(s) 73, 182, 256, 339, 457
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 123, 213, 234, 273, 327, 360, 420
Lsp1109I GCAGC 4 cut(s) 35, 236, 348, 351
LweI GCATC 1 cut(s) 420
MaeI CTAG 2 cut(s) 32, 323
MaeIII GTNAC 3 cut(s) 132, 385, 402
MalI GATC 5 cut(s) 75, 184, 258, 341, 459
MboI GATC 5 cut(s) 73, 182, 256, 339, 457
MboII GAAGA 1 cut(s) 366
MflI RGATCY 2 cut(s) 73, 256
MhlI GDGCHC 1 cut(s) 313
MnlI CCTC 3 cut(s) 49, 72, 106
MspI CCGG 3 cut(s) 110, 260, 407
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 317, 441
NdeII GATC 5 cut(s) 73, 182, 256, 339, 457
NlaIII CATG 5 cut(s) 192, 197, 278, 287, 439
NlaIV GGNNCC 2 cut(s) 219, 233
NmuCI GTSAC 1 cut(s) 402
NsbI TGCGCA 1 cut(s) 434
NspI RCATGY 1 cut(s) 197
PkrI GCNGC 4 cut(s) 25, 226, 363, 366
PshAI GACNNNNGTC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 219, 233
PspPI GGNCC 3 cut(s) 232, 265, 290
PsuI RGATCY 2 cut(s) 73, 256
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SatI GCNGC 4 cut(s) 24, 225, 362, 365
Sau3AI GATC 5 cut(s) 73, 182, 256, 339, 457
Sau96I GGNCC 3 cut(s) 232, 265, 290
SduI GDGCHC 1 cut(s) 313
SetI ASST 2 cut(s) 117, 210
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 3 cut(s) 232, 265, 290
SsiI CCGC 2 cut(s) 53, 268
SspMI CTAG 2 cut(s) 32, 323
StyI CCWWGG 1 cut(s) 87
TaqI TCGA 2 cut(s) 181, 342
TaqII GACCGA 1 cut(s) 249
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 4 cut(s) 23, 224, 361, 364
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 3 cut(s) 232, 265, 290
XceI RCATGY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 2 cut(s) 32, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.