Rmu_sc0009057.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009057.1
OG0000308
Physical Location & Seq
Reverse (-)
33666 .. 34418
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009057.1_g000009.1.cds

Sequence Viewer

Length: 678 bp
atgccggtcagggtggagatcgagttttcacagcccatacttactcaacgtctctttcagttggaggatcgagtggaggtgttgttgaagttccgttttgacaaactaattggcaggtgtaacaactgtgggtttataacccatgtgggattaccatgtcctagaccggtgttggaagatggggttggacatgacaggcctcgcctggtggagcagcgtcgcggtgctgctgaagcaaccttagtggttcgagcaccggaggctagggcaaaccctagcggacctactttgaagactcgacgtcaagtcgccatccgagaacttgaaggaaacagtgaacatgcatctccaattacggggaagaggaggaaacaaacaggtgatgtgtcgatatctctgaagaagccaaggctgagtttggcaattggtaagcacaatattgatgctaccactatgggtttacttgcacctgatatgagtaagccaaataagaagaagcgtggtcgccctgctggtagtcttaacaagaagccatatggtactgctggtaagggaacgaaaaactctgaggcaagtagtgagaagaagaagggtgccaaggcccgaaagaacttaaatgggaacttggcaaatgctggcgactccaaccctaaagggaaggagttggttctatgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.55

Weight (kDa)

10.36

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AarI CACCTGC 1 cut(s) 105
AatII GACGTC 1 cut(s) 304
Acc36I ACCTGC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 593
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 222, 279
AclWI GGATC 1 cut(s) 75
AcuI CTGAAG 2 cut(s) 252, 419
AcyI GRCGYC 1 cut(s) 301
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 356
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 3 cut(s) 88, 292, 326
AhdI GACNNNNNGTC 2 cut(s) 300, 305
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 75
AoxI GGCC 2 cut(s) 197, 600
ApeKI GCWGC 2 cut(s) 214, 227
AsiGI ACCGGT 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 281, 601
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 214, 226
BccI CCATC 2 cut(s) 173, 320
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 3 cut(s) 162, 264, 276
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 215, 228
BlsI GCNGC 2 cut(s) 216, 229
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 281
BmeRI GACNNNNNGTC 2 cut(s) 300, 305
BmgT120I GGNCC 2 cut(s) 281, 601
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 353, 433
BpiI GAAGAC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 407, 597
BsaWI WCCGGW 2 cut(s) 166, 256
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 2 cut(s) 4, 166
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 407, 597
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 404, 558
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 2 cut(s) 214, 226
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 199, 602
BshNI GGYRCC 1 cut(s) 593
BshTI ACCGGT 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 3 cut(s) 5, 167, 257
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 199, 602
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 18, 67
BspACI CCGC 2 cut(s) 222, 279
BspANI GGCC 2 cut(s) 199, 602
BspCNI CTCAG 2 cut(s) 405, 559
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 593
BsrFI RCCGGY 2 cut(s) 4, 166
BssAI RCCGGY 2 cut(s) 4, 166
BssECI CCNNGG 2 cut(s) 407, 597
BssMI GATC 2 cut(s) 18, 67
BssNI GRCGYC 1 cut(s) 301
BssT1I CCWWGG 2 cut(s) 407, 597
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 128, 335
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 3 cut(s) 241, 413, 567
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 2 cut(s) 21, 70
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 18, 67
BstMWI GCNNNNNNNGC 2 cut(s) 233, 260
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 214, 226
BstV2I GAAGAC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 199, 602
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 637
Cfr10I RCCGGY 2 cut(s) 4, 166
Cfr13I GGNCC 2 cut(s) 281, 601
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 540
CspAI ACCGGT 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 4 cut(s) 143, 156, 191, 341
CviJI RGCY 8 cut(s) 34, 199, 263, 406, 412, 484, 532, 602
CviKI_1 RGCY 8 cut(s) 34, 199, 263, 406, 412, 484, 532, 602
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 3 cut(s) 241, 413, 567
DpnI GATC 2 cut(s) 20, 69
DpnII GATC 2 cut(s) 18, 67
DriI GACNNNNNGTC 2 cut(s) 300, 305
Eam1104I CTCTTC 1 cut(s) 356
Eam1105I GACNNNNNGTC 2 cut(s) 300, 305
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 407, 597
Eco147I AGGCCT 1 cut(s) 199
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 252, 419
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 393
EcoT14I CCWWGG 2 cut(s) 407, 597
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 2 cut(s) 407, 597
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 4 cut(s) 146, 159, 194, 344
FatI CATG 4 cut(s) 142, 155, 190, 340
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 215, 228
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 215, 228
FspBI CTAG 3 cut(s) 162, 264, 276
GluI GCNGC 2 cut(s) 215, 228
HaeIII GGCC 2 cut(s) 199, 602
HapII CCGG 3 cut(s) 5, 167, 257
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 146, 159, 194, 344
HinfI GANTC 2 cut(s) 295, 641
HpaII CCGG 3 cut(s) 5, 167, 257
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 338, 461
Hpy188I TCNGA 3 cut(s) 317, 399, 568
Hpy8I GTNNAC 2 cut(s) 338, 461
Hpy99I CGWCG 2 cut(s) 222, 303
HpyAV CCTTC 3 cut(s) 320, 583, 652
HpyCH4III ACNGT 2 cut(s) 128, 335
HpyCH4IV ACGT 2 cut(s) 49, 301
HpyCH4V TGCA 2 cut(s) 344, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 260
HpyF3I CTNAG 3 cut(s) 241, 413, 567
HpySE526I ACGT 2 cut(s) 49, 301
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 146, 159, 194, 344
Kzo9I GATC 2 cut(s) 18, 67
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 214, 226
LweI GCATC 2 cut(s) 353, 433
MaeI CTAG 3 cut(s) 162, 264, 276
MaeII ACGT 2 cut(s) 49, 301
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 20, 69
MboI GATC 2 cut(s) 18, 67
MboII GAAGA 7 cut(s) 188, 304, 373, 412, 505, 595, 598
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 108, 351, 423
MlyI GAGTC 2 cut(s) 289, 635
MmeI TCCRAC 4 cut(s) 42, 153, 166, 669
MnlI CCTC 7 cut(s) 58, 70, 210, 253, 357, 360, 562
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 3 cut(s) 522, 614, 676
MspI CCGG 3 cut(s) 5, 167, 257
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 233, 260
NdeI CATATG 1 cut(s) 535
NdeII GATC 2 cut(s) 18, 67
NlaIII CATG 4 cut(s) 146, 159, 194, 344
NlaIV GGNNCC 1 cut(s) 595
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 105
PceI AGGCCT 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 2 cut(s) 216, 229
PleI GAGTC 2 cut(s) 289, 635
PpsI GAGTC 2 cut(s) 289, 635
PsiI TTATAA 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 2 cut(s) 281, 601
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
SaqAI TTAA 3 cut(s) 522, 614, 676
SatI GCNGC 2 cut(s) 215, 228
Sau3AI GATC 2 cut(s) 18, 67
Sau96I GGNCC 2 cut(s) 281, 601
SchI GAGTC 2 cut(s) 289, 635
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 256
SetI ASST 8 cut(s) 52, 81, 119, 242, 286, 304, 382, 472
SfaNI GCATC 2 cut(s) 353, 433
SinI GGWCC 1 cut(s) 281
Sse9I AATT 3 cut(s) 108, 351, 423
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 2 cut(s) 222, 279
SspI AATATT 1 cut(s) 439
SspMI CTAG 3 cut(s) 162, 264, 276
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 407, 597
TaaI ACNGT 2 cut(s) 128, 335
TaiI ACGT 2 cut(s) 52, 304
TaqI TCGA 5 cut(s) 21, 70, 250, 298, 389
TasI AATT 3 cut(s) 108, 351, 423
Tru1I TTAA 3 cut(s) 522, 614, 676
Tru9I TTAA 3 cut(s) 522, 614, 676
TscAI CASTG 1 cut(s) 340
TseI GCWGC 2 cut(s) 214, 227
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 281
XceI RCATGY 1 cut(s) 344
XspI CTAG 3 cut(s) 162, 264, 276
ZraI GACGTC 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.