Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 117, 179, 402 |
| AfaI | GTAC | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 43, 443, 444 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AhlI | ACTAGT | 1 cut(s) | 454 |
| AluBI | AGCT | 3 cut(s) | 11, 140, 174 |
| AluI | AGCT | 3 cut(s) | 11, 140, 174 |
| Alw21I | GWGCWC | 1 cut(s) | 142 |
| Alw26I | GTCTC | 1 cut(s) | 112 |
| AoxI | GGCC | 2 cut(s) | 430, 446 |
| ApeKI | GCWGC | 4 cut(s) | 11, 30, 228, 399 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| AseI | ATTAAT | 1 cut(s) | 24 |
| AspLEI | GCGC | 2 cut(s) | 210, 219 |
| AspS9I | GGNCC | 1 cut(s) | 446 |
| AsuC2I | CCSGG | 2 cut(s) | 38, 445 |
| BanII | GRGCYC | 1 cut(s) | 142 |
| BbsI | GAAGAC | 1 cut(s) | 468 |
| Bbv12I | GWGCWC | 1 cut(s) | 142 |
| BbvI | GCAGC | 3 cut(s) | 42, 240, 386 |
| BccI | CCATC | 1 cut(s) | 97 |
| BcnI | CCSGG | 2 cut(s) | 38, 445 |
| BcoDI | GTCTC | 1 cut(s) | 112 |
| BcuI | ACTAGT | 1 cut(s) | 454 |
| BfaI | CTAG | 1 cut(s) | 455 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 225 |
| BisI | GCNGC | 5 cut(s) | 12, 31, 229, 400, 403 |
| BlsI | GCNGC | 5 cut(s) | 13, 32, 230, 401, 404 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 445 |
| BmgT120I | GGNCC | 1 cut(s) | 446 |
| BmrFI | CCNGG | 2 cut(s) | 38, 445 |
| BpiI | GAAGAC | 1 cut(s) | 468 |
| BpuEI | CTTGAG | 1 cut(s) | 230 |
| BpuMI | CCSGG | 2 cut(s) | 38, 445 |
| Bsa29I | ATCGAT | 1 cut(s) | 255 |
| BsaBI | GATNNNNATC | 1 cut(s) | 99 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 43, 443, 444 |
| Bse1I | ACTGG | 1 cut(s) | 358 |
| Bse8I | GATNNNNATC | 1 cut(s) | 99 |
| BseCI | ATCGAT | 1 cut(s) | 255 |
| BseGI | GGATG | 1 cut(s) | 190 |
| BseJI | GATNNNNATC | 1 cut(s) | 99 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 43, 443, 444 |
| BseNI | ACTGG | 1 cut(s) | 358 |
| BseXI | GCAGC | 3 cut(s) | 42, 240, 386 |
| BsgI | GTGCAG | 1 cut(s) | 389 |
| Bsh1285I | CGRYCG | 2 cut(s) | 259, 397 |
| BshFI | GGCC | 2 cut(s) | 432, 448 |
| BshVI | ATCGAT | 1 cut(s) | 255 |
| BsiEI | CGRYCG | 2 cut(s) | 259, 397 |
| BsiHKAI | GWGCWC | 1 cut(s) | 142 |
| BsiSI | CCGG | 3 cut(s) | 37, 444, 449 |
| BslFI | GGGAC | 1 cut(s) | 310 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 43, 443, 444 |
| BsmAI | GTCTC | 1 cut(s) | 112 |
| BsmFI | GGGAC | 1 cut(s) | 310 |
| BsmI | GAATGC | 1 cut(s) | 266 |
| BsnI | GGCC | 2 cut(s) | 432, 448 |
| Bsp1286I | GDGCHC | 1 cut(s) | 142 |
| Bsp143I | GATC | 4 cut(s) | 100, 241, 256, 300 |
| BspACI | CCGC | 3 cut(s) | 117, 179, 402 |
| BspANI | GGCC | 2 cut(s) | 432, 448 |
| BspDI | ATCGAT | 1 cut(s) | 255 |
| BsrI | ACTGG | 1 cut(s) | 358 |
| BssMI | GATC | 4 cut(s) | 100, 241, 256, 300 |
| Bst4CI | ACNGT | 1 cut(s) | 167 |
| BstF5I | GGATG | 1 cut(s) | 190 |
| BstHHI | GCGC | 2 cut(s) | 210, 219 |
| BstKTI | GATC | 4 cut(s) | 103, 244, 259, 303 |
| BstMAI | GTCTC | 1 cut(s) | 112 |
| BstMBI | GATC | 4 cut(s) | 100, 241, 256, 300 |
| BstMCI | CGRYCG | 2 cut(s) | 259, 397 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 214, 216, 225, 237, 438 |
| BstSCI | CCNGG | 2 cut(s) | 36, 443 |
| BstV1I | GCAGC | 3 cut(s) | 42, 240, 386 |
| BstV2I | GAAGAC | 1 cut(s) | 468 |
| Bsu15I | ATCGAT | 1 cut(s) | 255 |
| BsuRI | GGCC | 2 cut(s) | 432, 448 |
| BsuTUI | ATCGAT | 1 cut(s) | 255 |
| BtsCI | GGATG | 1 cut(s) | 190 |
| CfoI | GCGC | 2 cut(s) | 210, 219 |
| Cfr13I | GGNCC | 1 cut(s) | 446 |
| ClaI | ATCGAT | 1 cut(s) | 255 |
| Csp6I | GTAC | 1 cut(s) | 188 |
| CviAII | CATG | 3 cut(s) | 15, 283, 425 |
| CviJI | RGCY | 7 cut(s) | 11, 33, 129, 140, 174, 432, 448 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 33, 129, 140, 174, 432, 448 |
| CviQI | GTAC | 1 cut(s) | 188 |
| DpnI | GATC | 4 cut(s) | 102, 243, 258, 302 |
| DpnII | GATC | 4 cut(s) | 100, 241, 256, 300 |
| EciI | GGCGGA | 1 cut(s) | 132 |
| Ecl136II | GAGCTC | 1 cut(s) | 140 |
| Eco24I | GRGCYC | 1 cut(s) | 142 |
| Eco53kI | GAGCTC | 1 cut(s) | 140 |
| EcoICRI | GAGCTC | 1 cut(s) | 140 |
| EcoT38I | GRGCYC | 1 cut(s) | 142 |
| FaeI | CATG | 3 cut(s) | 18, 286, 428 |
| FaiI | YATR | 9 cut(s) | 16, 132, 162, 215, 284, 309, 365, 381, 426 |
| FaqI | GGGAC | 1 cut(s) | 310 |
| FatI | CATG | 3 cut(s) | 14, 282, 424 |
| Fnu4HI | GCNGC | 5 cut(s) | 12, 31, 229, 400, 403 |
| FokI | GGATG | 1 cut(s) | 197 |
| FriOI | GRGCYC | 1 cut(s) | 142 |
| Fsp4HI | GCNGC | 5 cut(s) | 12, 31, 229, 400, 403 |
| FspBI | CTAG | 1 cut(s) | 455 |
| GlaI | GCGC | 2 cut(s) | 209, 218 |
| GluI | GCNGC | 5 cut(s) | 12, 31, 229, 400, 403 |
| HaeIII | GGCC | 2 cut(s) | 432, 448 |
| HapII | CCGG | 3 cut(s) | 37, 444, 449 |
| HhaI | GCGC | 2 cut(s) | 210, 219 |
| Hin1II | CATG | 3 cut(s) | 18, 286, 428 |
| Hin6I | GCGC | 2 cut(s) | 208, 217 |
| HinP1I | GCGC | 2 cut(s) | 208, 217 |
| HinfI | GANTC | 3 cut(s) | 274, 279, 336 |
| HpaII | CCGG | 3 cut(s) | 37, 444, 449 |
| Hpy188I | TCNGA | 4 cut(s) | 53, 94, 144, 205 |
| Hpy188III | TCNNGA | 3 cut(s) | 109, 196, 271 |
| Hpy99I | CGWCG | 2 cut(s) | 333, 336 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4III | ACNGT | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 2 cut(s) | 14, 370 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 214, 216, 225, 237, 438 |
| Hsp92II | CATG | 3 cut(s) | 18, 286, 428 |
| HspAI | GCGC | 2 cut(s) | 208, 217 |
| Kzo9I | GATC | 4 cut(s) | 100, 241, 256, 300 |
| LmnI | GCTCC | 3 cut(s) | 145, 205, 446 |
| LpnPI | CCDG | 9 cut(s) | 50, 248, 256, 325, 361, 371, 451, 457, 462 |
| Lsp1109I | GCAGC | 3 cut(s) | 42, 240, 386 |
| MaeI | CTAG | 1 cut(s) | 455 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MalI | GATC | 4 cut(s) | 102, 243, 258, 302 |
| MboI | GATC | 4 cut(s) | 100, 241, 256, 300 |
| MboII | GAAGA | 3 cut(s) | 68, 359, 473 |
| MhlI | GDGCHC | 1 cut(s) | 142 |
| MlyI | GAGTC | 1 cut(s) | 288 |
| MmeI | TCCRAC | 1 cut(s) | 31 |
| MnlI | CCTC | 7 cut(s) | 12, 37, 44, 203, 230, 327, 443 |
| MseI | TTAA | 1 cut(s) | 24 |
| MspI | CCGG | 3 cut(s) | 37, 444, 449 |
| MspR9I | CCNGG | 2 cut(s) | 38, 445 |
| Mva1269I | GAATGC | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 214, 216, 225, 237, 438 |
| NciI | CCSGG | 2 cut(s) | 38, 445 |
| NdeII | GATC | 4 cut(s) | 100, 241, 256, 300 |
| NlaIII | CATG | 3 cut(s) | 18, 286, 428 |
| NmeAIII | GCCGAG | 1 cut(s) | 155 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 283 |
| PctI | GAATGC | 1 cut(s) | 266 |
| PfeI | GAWTC | 2 cut(s) | 274, 336 |
| PflFI | GACNNNGTC | 1 cut(s) | 167 |
| PkrI | GCNGC | 5 cut(s) | 13, 32, 230, 401, 404 |
| Ple19I | CGATCG | 1 cut(s) | 259 |
| PleI | GAGTC | 1 cut(s) | 287 |
| PpsI | GAGTC | 1 cut(s) | 287 |
| PshBI | ATTAAT | 1 cut(s) | 24 |
| Psp124BI | GAGCTC | 1 cut(s) | 142 |
| PspPI | GGNCC | 1 cut(s) | 446 |
| PsyI | GACNNNGTC | 1 cut(s) | 167 |
| PvuI | CGATCG | 1 cut(s) | 259 |
| RsaI | GTAC | 1 cut(s) | 189 |
| RsaNI | GTAC | 1 cut(s) | 188 |
| SacI | GAGCTC | 1 cut(s) | 142 |
| SaqAI | TTAA | 1 cut(s) | 24 |
| SatI | GCNGC | 5 cut(s) | 12, 31, 229, 400, 403 |
| Sau3AI | GATC | 4 cut(s) | 100, 241, 256, 300 |
| Sau96I | GGNCC | 1 cut(s) | 446 |
| SchI | GAGTC | 1 cut(s) | 288 |
| ScrFI | CCNGG | 2 cut(s) | 38, 445 |
| SduI | GDGCHC | 1 cut(s) | 142 |
| SetI | ASST | 6 cut(s) | 13, 142, 153, 176, 319, 380 |
| SmlI | CTYRAG | 1 cut(s) | 245 |
| SmoI | CTYRAG | 1 cut(s) | 245 |
| SpeI | ACTAGT | 1 cut(s) | 454 |
| SsiI | CCGC | 3 cut(s) | 117, 179, 402 |
| SspMI | CTAG | 1 cut(s) | 455 |
| SstI | GAGCTC | 1 cut(s) | 142 |
| StyD4I | CCNGG | 2 cut(s) | 36, 443 |
| TaaI | ACNGT | 1 cut(s) | 167 |
| TaqI | TCGA | 6 cut(s) | 7, 110, 255, 277, 303, 334 |
| TaqII | GACCGA | 1 cut(s) | 383 |
| TauI | GCSGC | 1 cut(s) | 405 |
| TfiI | GAWTC | 2 cut(s) | 274, 336 |
| Tru1I | TTAA | 1 cut(s) | 24 |
| Tru9I | TTAA | 1 cut(s) | 24 |
| TseI | GCWGC | 4 cut(s) | 11, 30, 228, 399 |
| TspDTI | ATGAA | 2 cut(s) | 144, 366 |
| Tth111I | GACNNNGTC | 1 cut(s) | 167 |
| VspI | ATTAAT | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 455 |