Rh2BG406100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
57509021 .. 57510291
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG406100.1

Sequence Viewer

Length: 387 bp
ATGATCTCGTTTCAGGGAGATGCAAGAGAATATAAAGCAAGGACTTTTATGCAATACATAAAGAATTGCCTCAATCGTGGAGATTTGAACCAAGTAGAAGAGAGTAAGATATCCCTTAAGAGAGATACATGGGGATGCAGAATCAAATTCTTTTTTTTTTTTTGGTGCTTTGAAACTTCCCAGAAGGAGTGTTCCCATGAGATGAAGGGTATATTTGATGACAAATTAAGCAAGGGGAAGGAGCAGGAACAGGTGGAAAGTGATGGCCAAACAATGGTAGTGCAGTTGGCCGACAATTGGAAGATGAATGCTGATGAAGTGATGATCAGAGAAAGTCGAAGATTAGTGGAATTCTTGAGTTTGGGATTGGTTATGCATCCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.17

Weight (kDa)

6.14

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24891 FvH4_4g09031
rosa_multiflora Rmu_co8001542.1_g000001 Rmu_co8074240.1_g000001 Rmu_co8092076.1_g000001 Rmu_co8136936.1_g000001 Rmu_co8303129.1_g000001 Rmu_co8326579.1_g000001 Rmu_co8378475.1_g000001 Rmu_co8409011.1_g000001 Rmu_co8449663.1_g000001 Rmu_co8463085.1_g000001 Rmu_sc0000146.1_g000025 Rmu_sc0000294.1_g000018 Rmu_sc0000299.1_g000003 Rmu_sc0000342.1_g000003 Rmu_sc0000359.1_g000009 Rmu_sc0000431.1_g000022 Rmu_sc0000442.1_g000006 Rmu_sc0000458.1_g000011 Rmu_sc0000560.1_g000013 Rmu_sc0000594.1_g000075 Rmu_sc0000740.1_g000033 Rmu_sc0000839.1_g000002 Rmu_sc0000939.1_g000034 Rmu_sc0000955.1_g000002 Rmu_sc0001069.1_g000045 Rmu_sc0001074.1_g000019 Rmu_sc0001418.1_g000003 Rmu_sc0001484.1_g000006 Rmu_sc0001499.1_g000062 Rmu_sc0001631.1_g000002 Rmu_sc0001639.1_g000021 Rmu_sc0002146.1_g000007 Rmu_sc0002146.1_g000010 Rmu_sc0002260.1_g000065 Rmu_sc0002273.1_g000005 Rmu_sc0002310.1_g000016 Rmu_sc0002414.1_g000051 Rmu_sc0002479.1_g000003 Rmu_sc0002586.1_g000034 Rmu_sc0002586.1_g000035 Rmu_sc0002589.1_g000034 Rmu_sc0003187.1_g000020 Rmu_sc0003444.1_g000018 Rmu_sc0003633.1_g000041 Rmu_sc0003973.1_g000010 Rmu_sc0004209.1_g000004 Rmu_sc0004927.1_g000020 Rmu_sc0004950.1_g000007 Rmu_sc0004952.1_g000012 Rmu_sc0004966.1_g000001 Rmu_sc0006168.1_g000026 Rmu_sc0006325.1_g000003 Rmu_sc0006413.1_g000015 Rmu_sc0007192.1_g000002 Rmu_sc0007390.1_g000004 Rmu_sc0007847.1_g000003 Rmu_sc0008044.1_g000001 Rmu_sc0008101.1_g000008 Rmu_sc0008442.1_g000015 Rmu_sc0008714.1_g000004 Rmu_sc0009057.1_g000009 Rmu_sc0009916.1_g000015 Rmu_sc0010180.1_g000003 Rmu_sc0010560.1_g000005 Rmu_sc0010715.1_g000005 Rmu_sc0011022.1_g000002 Rmu_sc0011509.1_g000006 Rmu_sc0011831.1_g000006 Rmu_sc0012010.1_g000002 Rmu_sc0013320.1_g000007 Rmu_sc0013801.1_g000006 Rmu_sc0013801.1_g000007 Rmu_sc0013887.1_g000002 Rmu_sc0014485.1_g000014 Rmu_sc0018736.1_g000001 Rmu_sc0019355.1_g000001 Rmu_sc0020316.1_g000002 Rmu_sc0021214.1_g000001 Rmu_sc0021375.1_g000001 Rmu_sc0023412.1_g000001 Rmu_sc0024234.1_g000001 Rmu_sc0027415.1_g000001 Rmu_sc0029109.1_g000001 Rmu_sc0031708.1_g000001 Rmu_sc0035307.1_g000001 Rmu_sc0036546.1_g000001 Rmu_sc0037386.1_g000005 Rmu_sc0039204.1_g000001 Rmu_sc0039709.1_g000001 Rmu_sc0039867.1_g000001 Rmu_sc0040008.1_g000002 Rmu_sc0040009.1_g000002 Rmu_sc0041433.1_g000001 Rmu_sc0043076.1_g000001 Rmu_ssc0000024.1_g000022 Rmu_ssc0000065.1_g000003 Rmu_ssc0000100.1_g000036 Rmu_ssc0000171.1_g000015 Rmu_ssc0000190.1_g000018 Rmu_ssc0000226.1_g000017 Rmu_ssc0000244.1_g000039 Rmu_ssc0000419.1_g000008 Rmu_ssc0000451.1_g000014
rosa_roxburghii Rroxscaffold_1G00006150 Rroxscaffold_3G00219360 Rroxscaffold_5G00368320 Rroxscaffold_7G00191310
rosa_rugosa Rorug04G0060300 Rorug04G0115300 Rorug04G0128800
rosa_samantha Rh1AG029600 Rh2BG406100 Rh4DG128300 Rh5DG195500 Rh6AG427300 Rh6CG440900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AcoI YGGCCR 2 cut(s) 265, 288
AcsI RAATTY 2 cut(s) 146, 350
AfiI CCNNNNNNNGG 2 cut(s) 274, 297
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 88, 173
AoxI GGCC 2 cut(s) 265, 288
ApoI RAATTY 2 cut(s) 146, 350
BalI TGGCCA 1 cut(s) 267
BccI CCATC 1 cut(s) 257
BclI TGATCA 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 116
BmsI GCATC 2 cut(s) 10, 125
BpuEI CTTGAG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 297
BseGI GGATG 2 cut(s) 140, 376
BseLI CCNNNNNNNGG 2 cut(s) 274, 297
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 2 cut(s) 267, 290
BslI CCNNNNNNNGG 2 cut(s) 274, 297
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 267, 290
Bsp143I GATC 2 cut(s) 3, 324
BspANI GGCC 2 cut(s) 267, 290
BspTI CTTAAG 1 cut(s) 116
BssMI GATC 2 cut(s) 3, 324
Bst6I CTCTTC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 140, 376
BstKTI GATC 2 cut(s) 6, 327
BstMBI GATC 2 cut(s) 3, 324
BsuRI GGCC 2 cut(s) 267, 290
BtsCI GGATG 2 cut(s) 140, 376
CviAII CATG 3 cut(s) 129, 197, 381
CviJI RGCY 2 cut(s) 267, 290
CviKI_1 RGCY 2 cut(s) 267, 290
DpnI GATC 2 cut(s) 5, 326
DpnII GATC 2 cut(s) 3, 324
EaeI YGGCCR 2 cut(s) 265, 288
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 350
EcoRV GATATC 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 3 cut(s) 132, 200, 384
FaiI YATR 8 cut(s) 33, 50, 59, 130, 198, 212, 374, 382
FatI CATG 3 cut(s) 128, 196, 380
FbaI TGATCA 1 cut(s) 324
FokI GGATG 2 cut(s) 147, 363
HaeIII GGCC 2 cut(s) 267, 290
Hin1II CATG 3 cut(s) 132, 200, 384
HinfI GANTC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 1 cut(s) 355
HpyAV CCTTC 3 cut(s) 178, 199, 232
HpyCH4V TGCA 5 cut(s) 23, 52, 138, 283, 376
Hsp92II CATG 3 cut(s) 132, 200, 384
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 3, 324
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 194, 230, 236
LweI GCATC 2 cut(s) 10, 125
MalI GATC 2 cut(s) 5, 326
MboI GATC 2 cut(s) 3, 324
MboII GAAGA 3 cut(s) 110, 313, 351
MfeI CAATTG 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 5 cut(s) 64, 146, 224, 295, 350
MluNI TGGCCA 1 cut(s) 267
MnlI CCTC 1 cut(s) 80
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 378
MscI TGGCCA 1 cut(s) 267
MseI TTAA 3 cut(s) 117, 227, 385
MslI CAYNNNNRTG 1 cut(s) 133
Msp20I TGGCCA 1 cut(s) 267
MspCI CTTAAG 1 cut(s) 116
MunI CAATTG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 313
NdeII GATC 2 cut(s) 3, 324
NlaIII CATG 3 cut(s) 132, 200, 384
NsiI ATGCAT 1 cut(s) 378
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 3 cut(s) 117, 227, 385
Sau3AI GATC 2 cut(s) 3, 324
SetI ASST 1 cut(s) 255
SfaNI GCATC 2 cut(s) 10, 125
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 116, 355
SmoI CTYRAG 2 cut(s) 116, 355
Sse9I AATT 5 cut(s) 64, 146, 224, 295, 350
TaqI TCGA 1 cut(s) 337
TasI AATT 5 cut(s) 64, 146, 224, 295, 350
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 3 cut(s) 117, 227, 385
Tru9I TTAA 3 cut(s) 117, 227, 385
TspDTI ATGAA 3 cut(s) 218, 320, 330
Van91I CCANNNNNTGG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 116
XapI RAATTY 2 cut(s) 146, 350
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.