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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 61 |
| AccI | GTMKAC | 1 cut(s) | 262 |
| AcyI | GRCGYC | 1 cut(s) | 58 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 113 |
| AgsI | TTSAA | 2 cut(s) | 83, 224 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 57, 62 |
| AluBI | AGCT | 1 cut(s) | 33 |
| AluI | AGCT | 1 cut(s) | 33 |
| Alw26I | GTCTC | 1 cut(s) | 156 |
| Ama87I | CYCGRG | 1 cut(s) | 72 |
| AoxI | GGCC | 1 cut(s) | 357 |
| ApeKI | GCWGC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 2 cut(s) | 58, 149 |
| AvaI | CYCGRG | 1 cut(s) | 72 |
| BaeGI | GKGCMC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 1 cut(s) | 56 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BcoDI | GTCTC | 1 cut(s) | 156 |
| BisI | GCNGC | 1 cut(s) | 204 |
| BlsI | GCNGC | 1 cut(s) | 205 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 57, 62 |
| BmeT110I | CYCGRG | 1 cut(s) | 72 |
| BmsI | GCATC | 3 cut(s) | 110, 190, 276 |
| BpiI | GAAGAC | 1 cut(s) | 56 |
| BsaHI | GRCGYC | 1 cut(s) | 58 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 164 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 2 cut(s) | 12, 164 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 113 |
| BseMII | CTCAG | 3 cut(s) | 59, 161, 336 |
| BseRI | GAGGAG | 1 cut(s) | 136 |
| BseSI | GKGCMC | 1 cut(s) | 353 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BshFI | GGCC | 1 cut(s) | 359 |
| BsiHKCI | CYCGRG | 1 cut(s) | 72 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 113 |
| BsmAI | GTCTC | 1 cut(s) | 156 |
| BsnI | GGCC | 1 cut(s) | 359 |
| BsoBI | CYCGRG | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 353 |
| BspANI | GGCC | 1 cut(s) | 359 |
| BspCNI | CTCAG | 3 cut(s) | 58, 162, 335 |
| BssECI | CCNNGG | 2 cut(s) | 12, 164 |
| BssNI | GRCGYC | 1 cut(s) | 58 |
| BssT1I | CCWWGG | 2 cut(s) | 12, 164 |
| Bst6I | CTCTTC | 1 cut(s) | 113 |
| BstACI | GRCGYC | 1 cut(s) | 58 |
| BstC8I | GCNNGC | 2 cut(s) | 31, 99 |
| BstDEI | CTNAG | 3 cut(s) | 45, 170, 322 |
| BstMAI | GTCTC | 1 cut(s) | 156 |
| BstNSI | RCATGY | 1 cut(s) | 101 |
| BstSLI | GKGCMC | 1 cut(s) | 353 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BstV2I | GAAGAC | 1 cut(s) | 56 |
| BsuRI | GGCC | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 2 cut(s) | 31, 99 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviAII | CATG | 1 cut(s) | 98 |
| CviJI | RGCY | 7 cut(s) | 5, 17, 33, 163, 169, 241, 359 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 17, 33, 163, 169, 241, 359 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DdeI | CTNAG | 3 cut(s) | 45, 170, 322 |
| DriI | GACNNNNNGTC | 2 cut(s) | 57, 62 |
| Eam1104I | CTCTTC | 1 cut(s) | 113 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 57, 62 |
| EarI | CTCTTC | 1 cut(s) | 113 |
| Eco130I | CCWWGG | 2 cut(s) | 12, 164 |
| Eco147I | AGGCCT | 1 cut(s) | 359 |
| Eco88I | CYCGRG | 1 cut(s) | 72 |
| EcoT14I | CCWWGG | 2 cut(s) | 12, 164 |
| EcoT22I | ATGCAT | 1 cut(s) | 103 |
| ErhI | CCWWGG | 2 cut(s) | 12, 164 |
| FaeI | CATG | 1 cut(s) | 101 |
| FaiI | YATR | 7 cut(s) | 23, 99, 113, 212, 233, 292, 294 |
| FatI | CATG | 1 cut(s) | 97 |
| FauNDI | CATATG | 1 cut(s) | 292 |
| FblI | GTMKAC | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 1 cut(s) | 204 |
| GluI | GCNGC | 1 cut(s) | 204 |
| HaeIII | GGCC | 1 cut(s) | 359 |
| Hin1I | GRCGYC | 1 cut(s) | 58 |
| Hin1II | CATG | 1 cut(s) | 101 |
| HincII | GTYRAC | 1 cut(s) | 263 |
| HindII | GTYRAC | 1 cut(s) | 263 |
| HinfI | GANTC | 1 cut(s) | 52 |
| HphI | GGTGA | 2 cut(s) | 58, 149 |
| Hpy166II | GTNNAC | 1 cut(s) | 263 |
| Hpy188I | TCNGA | 3 cut(s) | 48, 156, 325 |
| Hpy8I | GTNNAC | 1 cut(s) | 263 |
| Hpy99I | CGWCG | 1 cut(s) | 60 |
| HpyAV | CCTTC | 3 cut(s) | 50, 77, 340 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 101 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 170, 322 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| Hsp92I | GRCGYC | 1 cut(s) | 58 |
| Hsp92II | CATG | 1 cut(s) | 101 |
| LpnPI | CCDG | 3 cut(s) | 120, 279, 288 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 3 cut(s) | 110, 190, 276 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MboII | GAAGA | 6 cut(s) | 61, 130, 169, 262, 352, 355 |
| MfeI | CAATTG | 1 cut(s) | 180 |
| MhlI | GDGCHC | 1 cut(s) | 353 |
| MluCI | AATT | 4 cut(s) | 78, 108, 180, 219 |
| MlyI | GAGTC | 1 cut(s) | 46 |
| MnlI | CCTC | 4 cut(s) | 54, 114, 117, 319 |
| Mph1103I | ATGCAT | 1 cut(s) | 103 |
| MseI | TTAA | 2 cut(s) | 218, 279 |
| MunI | CAATTG | 1 cut(s) | 180 |
| NdeI | CATATG | 1 cut(s) | 292 |
| NlaIII | CATG | 1 cut(s) | 101 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| NsiI | ATGCAT | 1 cut(s) | 103 |
| NspI | RCATGY | 1 cut(s) | 101 |
| PaeI | GCATGC | 1 cut(s) | 101 |
| PceI | AGGCCT | 1 cut(s) | 359 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 152 |
| PkrI | GCNGC | 1 cut(s) | 205 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| SalI | GTCGAC | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 218, 279 |
| SatI | GCNGC | 1 cut(s) | 204 |
| SchI | GAGTC | 1 cut(s) | 46 |
| SduI | GDGCHC | 1 cut(s) | 353 |
| SetI | ASST | 5 cut(s) | 14, 35, 61, 139, 268 |
| SfaNI | GCATC | 3 cut(s) | 110, 190, 276 |
| SphI | GCATGC | 1 cut(s) | 101 |
| Sse9I | AATT | 4 cut(s) | 78, 108, 180, 219 |
| SseBI | AGGCCT | 1 cut(s) | 359 |
| SspI | AATATT | 1 cut(s) | 196 |
| StuI | AGGCCT | 1 cut(s) | 359 |
| StyI | CCWWGG | 2 cut(s) | 12, 164 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 2 cut(s) | 55, 262 |
| TasI | AATT | 4 cut(s) | 78, 108, 180, 219 |
| Tru1I | TTAA | 2 cut(s) | 218, 279 |
| Tru9I | TTAA | 2 cut(s) | 218, 279 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 1 cut(s) | 203 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| XceI | RCATGY | 1 cut(s) | 101 |
| XmiI | GTMKAC | 1 cut(s) | 262 |
| ZraI | GACGTC | 1 cut(s) | 59 |
| Zsp2I | ATGCAT | 1 cut(s) | 103 |